Wall clock time and date at job start Tue Mar 31 2020 03:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47309 * 2 1 4 4 C 1.34951 * 126.03349 * 124.99822 * 3 2 1 5 5 C 1.35318 * 107.74311 * 180.02562 * 4 3 2 6 6 C 1.39865 * 107.92456 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.90392 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47127 * 125.00214 * 7 6 5 9 9 O 1.21286 * 119.99950 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00284 * 180.02562 * 8 7 6 11 11 C 1.46957 * 120.59483 * 179.97438 * 10 8 7 12 12 C 1.53378 * 108.63600 * 235.24927 * 11 10 8 13 13 N 1.46960 * 108.63441 * 310.57541 * 12 11 10 14 14 C 1.36929 * 120.59772 * 235.19929 * 13 12 11 15 15 H 1.08001 * 120.00154 * 26.80307 * 14 13 12 16 16 C 1.38818 * 120.00276 * 206.52209 * 14 13 12 17 17 N 1.31616 * 120.00013 * 217.35632 * 16 14 13 18 18 Si 1.86795 * 119.99797 * 37.35637 * 16 14 13 19 19 H 1.48497 * 109.47307 * 95.28345 * 18 16 14 20 20 H 1.48499 * 109.46918 * 215.28171 * 18 16 14 21 21 H 1.48500 * 109.47058 * 335.28197 * 18 16 14 22 22 C 1.46972 * 118.81093 * 55.48291 * 13 12 11 23 23 C 1.46973 * 120.59110 * 0.02618 * 10 8 7 24 24 N 1.30841 * 108.20234 * 0.26559 * 6 5 4 25 25 H 1.08999 * 109.47634 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47161 * 299.99797 * 1 2 3 27 27 H 1.08997 * 109.47245 * 59.99574 * 1 2 3 28 28 H 1.09006 * 109.47161 * 240.00202 * 2 1 3 29 29 H 1.09003 * 109.47102 * 120.00885 * 2 1 3 30 30 H 1.07996 * 126.12937 * 359.97043 * 4 3 2 31 31 H 1.08004 * 126.03938 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.46755 * 5.00762 * 7 6 5 33 33 H 1.08994 * 109.47420 * 245.00166 * 7 6 5 34 34 H 1.09004 * 109.60829 * 115.50719 * 11 10 8 35 35 H 1.08995 * 109.61517 * 354.99897 * 11 10 8 36 36 H 1.09001 * 109.60979 * 190.83526 * 12 11 10 37 37 H 1.08997 * 109.60544 * 70.32236 * 12 11 10 38 38 H 0.97000 * 120.00046 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.61298 * 64.25873 * 22 13 12 40 40 H 1.08995 * 109.61261 * 184.77395 * 22 13 12 41 41 H 1.08994 * 109.60538 * 244.49313 * 23 10 8 42 42 H 1.09004 * 109.60748 * 4.83428 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8731 1.9209 0.8940 5 6 3.0713 3.2136 0.5464 6 6 2.3113 3.4729 -0.5987 7 6 2.2331 4.7892 -1.3282 8 6 2.5896 4.5822 -2.7778 9 8 2.8782 3.4746 -3.1791 10 7 2.5877 5.6277 -3.6282 11 6 2.9338 5.4407 -5.0442 12 6 4.0808 6.3953 -5.3986 13 7 3.7331 7.7428 -4.9265 14 6 3.7322 8.8053 -5.7902 15 1 3.5553 8.6449 -6.8435 16 6 3.9527 10.0895 -5.3113 17 7 3.2936 11.1059 -5.8257 18 14 5.1849 10.3748 -3.9367 19 1 6.4970 10.7549 -4.5191 20 1 4.6994 11.4671 -3.0556 21 1 5.3380 9.1292 -3.1427 22 6 3.3926 7.9308 -3.5091 23 6 2.2406 6.9755 -3.1559 24 7 1.6749 2.3768 -0.9237 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 3.3184 1.4126 1.7364 31 1 3.7039 3.9205 1.0626 32 1 2.9319 5.4952 -0.8795 33 1 1.2202 5.1850 -1.2562 34 1 2.0665 5.6645 -5.6654 35 1 3.2501 4.4110 -5.2107 36 1 4.2225 6.4116 -6.4792 37 1 4.9974 6.0622 -4.9119 38 1 3.4480 12.0033 -5.4913 39 1 4.2614 7.7046 -2.8910 40 1 3.0798 8.9614 -3.3416 41 1 1.3239 7.3087 -3.6423 42 1 2.0963 6.9585 -2.0755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593478403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:14 Heat of formation + Delta-G solvation = 58.990257 kcal Electronic energy + Delta-G solvation = -23474.297547 eV Core-core repulsion = 20070.566436 eV Total energy + Delta-G solvation = -3403.731111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.12957 -40.90619 -38.53835 -35.60898 -35.56450 -33.65846 -32.78117 -31.89679 -30.66170 -29.39589 -28.36029 -25.36768 -24.72976 -24.10236 -22.47159 -21.97427 -20.86297 -19.87221 -18.71693 -18.01235 -17.76280 -17.00371 -16.61602 -16.47502 -16.16528 -15.97158 -15.36337 -15.20512 -14.96955 -14.77212 -14.51388 -14.22409 -14.11230 -14.10585 -13.65109 -13.36588 -13.24884 -12.92959 -12.82331 -12.73439 -12.47637 -12.23451 -12.19873 -12.08401 -11.85648 -11.39225 -11.38355 -10.79339 -10.64398 -10.13506 -9.82344 -9.40750 -8.85727 -8.21529 -5.37375 1.05521 1.38648 1.50779 1.57468 1.66361 1.70962 1.79631 2.18994 2.47360 2.95579 3.40500 3.49153 3.68976 3.88560 4.06154 4.11998 4.15116 4.22818 4.31324 4.36001 4.37084 4.46584 4.52014 4.60686 4.67159 4.70845 4.79586 4.82615 4.90083 4.91552 4.97704 5.02804 5.16033 5.20908 5.24489 5.54881 5.75449 5.87100 6.12271 6.28036 6.50778 6.87838 6.91673 7.22646 7.64031 8.06839 8.96553 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032535 B = 0.003397 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.408946 B = 8240.086311 C = 8644.683911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 N -0.381 5.381 4 C 0.055 3.945 5 C -0.285 4.285 6 C 0.064 3.936 7 C -0.055 4.055 8 C 0.514 3.486 9 O -0.578 6.578 10 N -0.605 5.605 11 C 0.106 3.894 12 C 0.135 3.865 13 N -0.613 5.613 14 C -0.268 4.268 15 H 0.048 0.952 16 C -0.011 4.011 17 N -0.927 5.927 18 Si 0.901 3.099 19 H -0.306 1.306 20 H -0.290 1.290 21 H -0.233 1.233 22 C 0.124 3.876 23 C 0.095 3.905 24 N -0.314 5.314 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.214 0.786 31 H 0.166 0.834 32 H 0.139 0.861 33 H 0.127 0.873 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 -19.432 18.587 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 N -0.164 5.164 4 C -0.091 4.091 5 C -0.314 4.314 6 C -0.102 4.102 7 C -0.096 4.096 8 C 0.303 3.697 9 O -0.457 6.457 10 N -0.337 5.337 11 C -0.018 4.018 12 C 0.009 3.991 13 N -0.337 5.337 14 C -0.397 4.397 15 H 0.065 0.935 16 C -0.209 4.209 17 N -0.570 5.570 18 Si 0.728 3.272 19 H -0.235 1.235 20 H -0.217 1.217 21 H -0.157 1.157 22 C -0.001 4.001 23 C -0.029 4.029 24 N -0.137 5.137 25 H 0.117 0.883 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.152 0.848 30 H 0.231 0.769 31 H 0.184 0.816 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.158 -20.577 17.543 27.358 hybrid contribution 1.271 1.200 0.274 1.769 sum -2.888 -19.377 17.817 26.481 Atomic orbital electron populations 1.21990 0.93792 1.03845 1.01965 1.21992 0.96224 0.76354 1.05206 1.49073 1.35817 1.10669 1.20864 1.23188 0.94761 0.94595 0.96535 1.21706 1.10086 0.98135 1.01468 1.21888 0.97700 0.94326 0.96314 1.20159 1.06434 0.93662 0.89315 1.20965 0.76528 0.83433 0.88812 1.90665 1.50476 1.25381 1.79211 1.48080 1.67602 1.08614 1.09436 1.21934 0.98462 0.99960 0.81453 1.21385 0.94550 0.84215 0.98960 1.44414 1.79071 1.04007 1.06249 1.18681 1.43879 0.85647 0.91461 0.93465 1.25707 0.99972 0.94925 1.00263 1.70203 1.39044 1.00593 1.47124 0.86553 0.81119 0.78914 0.80649 1.23487 1.21703 1.15682 1.21882 0.95607 0.98136 0.84519 1.22514 0.98234 0.80689 1.01433 1.77301 1.25021 0.97599 1.13731 0.88266 0.92301 0.94081 0.90507 0.84827 0.76903 0.81599 0.84270 0.85533 0.91940 0.89802 0.91092 0.95332 0.92737 0.94101 0.91720 0.91323 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 10.09 71.98 0.73 -1.44 16 2 C 0.12 1.71 7.23 86.38 0.62 2.33 16 3 N -0.38 -8.50 3.68 -348.07 -1.28 -9.78 16 4 C 0.05 0.97 11.45 83.54 0.96 1.93 16 5 C -0.28 -6.08 10.72 21.99 0.24 -5.84 16 6 C 0.06 1.76 6.01 43.10 0.26 2.02 16 7 C -0.05 -1.32 4.62 29.10 0.13 -1.19 16 8 C 0.51 16.96 7.69 87.66 0.67 17.63 16 9 O -0.58 -23.70 14.98 -3.05 -0.05 -23.74 16 10 N -0.60 -20.06 2.95 -817.21 -2.41 -22.47 16 11 C 0.11 3.80 6.59 86.42 0.57 4.37 16 12 C 0.13 5.33 6.67 86.42 0.58 5.91 16 13 N -0.61 -27.95 2.71 -697.41 -1.89 -29.84 16 14 C -0.27 -14.67 9.84 84.04 0.83 -13.85 16 15 H 0.05 2.85 8.05 -2.91 -0.02 2.82 16 16 C -0.01 -0.59 4.80 84.86 0.41 -0.18 16 17 N -0.93 -55.62 13.97 21.65 0.30 -55.32 16 18 Si 0.90 42.41 26.46 68.60 1.82 44.23 16 19 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.23 -9.96 4.99 99.48 0.50 -9.47 16 22 C 0.12 4.80 4.58 86.55 0.40 5.20 16 23 C 0.10 2.88 6.52 86.55 0.56 3.45 16 24 N -0.31 -9.63 11.77 -47.39 -0.56 -10.19 16 25 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 29 H 0.13 0.74 8.07 -2.39 -0.02 0.72 16 30 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.14 2.52 7.70 -2.39 -0.02 2.50 16 33 H 0.13 2.53 7.91 -2.39 -0.02 2.51 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 3.01 6.99 -2.39 -0.02 3.00 16 36 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.04 1.53 6.78 -2.39 -0.02 1.52 16 40 H 0.06 2.68 5.59 -2.39 -0.01 2.67 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.12 2.57 5.91 -2.39 -0.01 2.56 16 Total: -1.00 -78.51 338.90 3.68 -74.83 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.80 Total: 11.96 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 6.95 Total: 20.34 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -5.83 Total: -127.60 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.82 Total: 44.23 kcal Total: -78.51 3.68 -74.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593478403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.817 kcal (2) G-P(sol) polarization free energy of solvation -78.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds