Wall clock time and date at job start Tue Mar 31 2020 03:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47036 * 2 1 4 4 C 1.53002 * 109.47536 * 239.99721 * 2 1 3 5 5 C 1.50698 * 109.47026 * 64.99822 * 4 2 1 6 6 C 1.34665 * 126.59083 * 85.02794 * 5 4 2 7 7 N 1.34128 * 108.02345 * 179.97438 * 6 5 4 8 8 C 1.30495 * 109.25330 * 359.97438 * 7 6 5 9 9 N 1.35050 * 108.70043 * 359.77251 * 8 7 6 10 10 H 0.97004 * 126.39591 * 180.26743 * 9 8 7 11 11 C 1.50704 * 109.47013 * 119.99528 * 2 1 3 12 12 O 1.21278 * 119.99582 * 23.37590 * 11 2 1 13 13 N 1.34774 * 120.00096 * 203.37688 * 11 2 1 14 14 C 1.46964 * 120.59391 * 184.92918 * 13 11 2 15 15 C 1.53374 * 108.63676 * 124.75297 * 14 13 11 16 16 N 1.46967 * 108.63159 * 49.42084 * 15 14 13 17 17 C 1.36938 * 120.59128 * 124.75828 * 16 15 14 18 18 H 1.07996 * 120.00093 * 207.91405 * 17 16 15 19 19 C 1.38809 * 120.00099 * 27.90927 * 17 16 15 20 20 N 1.31620 * 120.00161 * 16.34530 * 19 17 16 21 21 Si 1.86795 * 120.00204 * 196.33970 * 19 17 16 22 22 H 1.48500 * 109.47387 * 60.00421 * 21 19 17 23 23 H 1.48499 * 109.47496 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47329 * 300.00152 * 21 19 17 25 25 C 1.46964 * 118.81327 * 304.77223 * 16 15 14 26 26 C 1.46972 * 120.59332 * 4.90595 * 13 11 2 27 27 H 1.09010 * 109.47115 * 54.94461 * 1 2 3 28 28 H 1.09001 * 109.47565 * 174.93860 * 1 2 3 29 29 H 1.08997 * 109.47479 * 294.94566 * 1 2 3 30 30 H 1.08994 * 109.46995 * 184.99924 * 4 2 1 31 31 H 1.08999 * 109.46827 * 305.00097 * 4 2 1 32 32 H 1.08005 * 125.99167 * 359.96047 * 6 5 4 33 33 H 1.07999 * 125.65061 * 180.02562 * 8 7 6 34 34 H 1.08994 * 109.61182 * 5.00643 * 14 13 11 35 35 H 1.09010 * 109.60872 * 244.49541 * 14 13 11 36 36 H 1.08996 * 109.61216 * 169.16808 * 15 14 13 37 37 H 1.08999 * 109.60599 * 289.50638 * 15 14 13 38 38 H 0.97003 * 120.00672 * 180.02562 * 20 19 17 39 39 H 1.09006 * 109.60515 * 174.97269 * 25 16 15 40 40 H 1.09000 * 109.61409 * 295.48500 * 25 16 15 41 41 H 1.08997 * 109.60639 * 115.50506 * 26 13 11 42 42 H 1.08996 * 109.61028 * 354.99344 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4766 6 6 2.3075 1.0924 -3.0220 7 7 1.6244 1.5034 -4.1007 8 6 0.5606 0.7614 -4.2447 9 7 0.5360 -0.1571 -3.2550 10 1 -0.1397 -0.8398 -3.1200 11 6 2.0322 -0.7103 1.2306 12 8 1.3253 -1.5177 1.7956 13 7 3.2669 -0.4484 1.7031 14 6 3.8113 -1.2096 2.8362 15 6 5.1529 -1.8224 2.4157 16 7 5.9792 -0.7707 1.8067 17 6 7.2338 -0.5045 2.2867 18 1 7.6521 0.4859 2.1848 19 6 7.9678 -1.5077 2.9044 20 7 7.6186 -2.7676 2.7523 21 14 9.4514 -1.0698 3.9516 22 1 9.0248 -0.1950 5.0732 23 1 10.0578 -2.3116 4.4949 24 1 10.4514 -0.3545 3.1187 25 6 5.4349 -0.0095 0.6735 26 6 4.0933 0.6034 1.0940 27 1 -0.3634 0.5903 -0.8413 28 1 -0.3634 -1.0236 -0.0907 29 1 -0.3634 0.4334 0.9317 30 1 3.1263 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2950 32 1 3.2300 1.5177 -2.6550 33 1 -0.1759 0.8624 -5.0282 34 1 3.1167 -2.0033 3.1111 35 1 3.9636 -0.5431 3.6853 36 1 5.6613 -2.2260 3.2913 37 1 4.9802 -2.6200 1.6931 38 1 8.1313 -3.4687 3.1842 39 1 6.1296 0.7843 0.3986 40 1 5.2825 -0.6759 -0.1755 41 1 4.2657 1.3989 1.8190 42 1 3.5850 1.0070 0.2184 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594294552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:15 Heat of formation + Delta-G solvation = 26.645627 kcal Electronic energy + Delta-G solvation = -24054.159442 eV Core-core repulsion = 20649.025762 eV Total energy + Delta-G solvation = -3405.133679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.94589 -41.23115 -38.53397 -36.18070 -35.55694 -33.26684 -33.02640 -31.95870 -30.87413 -28.76359 -27.37194 -25.79721 -24.86414 -23.75576 -22.40402 -21.92555 -21.45344 -19.84139 -18.91368 -18.64736 -17.87093 -16.93609 -16.72506 -16.29498 -15.90126 -15.64382 -15.44750 -15.23530 -15.05044 -14.85332 -14.66805 -14.33703 -14.10396 -13.72383 -13.57444 -13.35414 -13.12313 -12.93878 -12.64777 -12.47184 -12.33437 -12.31295 -12.07915 -11.96981 -11.78480 -11.67403 -10.93363 -10.87111 -10.67693 -10.58221 -9.80850 -9.25617 -8.64429 -7.86870 -5.35241 1.11717 1.49471 1.51764 1.58080 1.63169 2.05037 2.29091 2.35787 2.52450 3.28295 3.41787 3.61232 3.78381 3.91078 3.97450 4.14506 4.21527 4.26741 4.36272 4.40410 4.42890 4.56516 4.67677 4.68302 4.75454 4.76869 4.80895 4.84177 4.93866 5.03869 5.10710 5.21405 5.28895 5.37454 5.48211 5.62451 5.70048 5.84839 6.36881 6.53228 6.62729 7.11268 7.18053 7.20619 7.81422 8.33509 9.17993 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.003932 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.594072 B = 7118.778005 C = 7870.437518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 H 0.114 0.886 4 C -0.026 4.026 5 C -0.012 4.012 6 C -0.040 4.040 7 N -0.537 5.537 8 C 0.191 3.809 9 N -0.557 5.557 10 H 0.432 0.568 11 C 0.511 3.489 12 O -0.589 6.589 13 N -0.600 5.600 14 C 0.101 3.899 15 C 0.170 3.830 16 N -0.608 5.608 17 C -0.262 4.262 18 H 0.075 0.925 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.278 1.278 23 H -0.298 1.298 24 H -0.274 1.274 25 C 0.126 3.874 26 C 0.096 3.904 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.173 0.827 33 H 0.243 0.757 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.070 0.930 37 H -0.006 1.006 38 H 0.250 0.750 39 H 0.079 0.921 40 H 0.022 0.978 41 H 0.072 0.928 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.635 7.379 -10.676 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.116 4.116 3 H 0.132 0.868 4 C -0.065 4.065 5 C -0.129 4.129 6 C -0.188 4.188 7 N -0.256 5.256 8 C -0.093 4.093 9 N -0.161 5.161 10 H 0.273 0.727 11 C 0.300 3.700 12 O -0.470 6.470 13 N -0.331 5.331 14 C -0.023 4.023 15 C 0.043 3.957 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.093 0.907 19 C -0.245 4.245 20 N -0.583 5.583 21 Si 0.796 3.204 22 H -0.204 1.204 23 H -0.225 1.225 24 H -0.200 1.200 25 C 0.000 4.000 26 C -0.028 4.028 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.190 0.810 33 H 0.259 0.741 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.012 0.988 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.040 0.960 41 H 0.091 0.909 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.627 7.515 -10.844 20.452 hybrid contribution 0.647 -1.357 1.372 2.035 sum -14.980 6.158 -9.472 18.763 Atomic orbital electron populations 1.21575 0.91859 1.02455 1.02241 1.21332 0.98583 1.01071 0.90610 0.86775 1.19842 1.02021 0.97307 0.87368 1.20873 0.91983 1.02210 0.97785 1.22345 1.02520 0.98303 0.95612 1.70280 1.07128 1.28749 1.19480 1.25668 0.99401 0.88954 0.95285 1.43307 1.21220 1.28899 1.22693 0.72712 1.21225 0.80482 0.82220 0.86036 1.90626 1.56872 1.37947 1.61591 1.48176 1.15192 1.36624 1.33109 1.22106 0.95893 0.95799 0.88545 1.20888 0.88364 0.89165 0.97251 1.44225 1.13961 1.40615 1.34381 1.19543 0.92290 0.94466 1.32933 0.90715 1.25802 1.00773 0.94846 1.03073 1.70153 1.42618 0.99221 1.46265 0.85338 0.79508 0.76457 0.79105 1.20386 1.22468 1.19983 1.21496 0.94060 0.95233 0.89196 1.22471 0.91987 0.89096 0.99240 0.90571 0.92395 0.92897 0.89393 0.90556 0.80991 0.74117 0.90834 0.92042 0.91177 0.98774 0.94108 0.90276 0.96011 0.90927 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.34 71.98 0.60 -1.78 16 2 C -0.09 -2.04 1.87 -11.54 -0.02 -2.06 16 3 H 0.11 2.10 6.32 -2.38 -0.02 2.09 16 4 C -0.03 -0.52 5.08 29.85 0.15 -0.37 16 5 C -0.01 -0.22 5.60 40.95 0.23 0.01 16 6 C -0.04 -0.86 11.79 83.52 0.98 0.12 16 7 N -0.54 -11.95 11.25 -200.31 -2.25 -14.20 16 8 C 0.19 2.73 13.04 180.26 2.35 5.08 16 9 N -0.56 -7.21 5.96 -186.50 -1.11 -8.32 16 10 H 0.43 3.10 8.96 -92.71 -0.83 2.27 16 11 C 0.51 16.06 6.82 87.66 0.60 16.66 16 12 O -0.59 -22.79 15.60 -3.02 -0.05 -22.84 16 13 N -0.60 -20.10 2.95 -818.00 -2.41 -22.51 16 14 C 0.10 4.03 6.58 86.42 0.57 4.60 16 15 C 0.17 8.16 5.51 86.42 0.48 8.64 16 16 N -0.61 -28.91 2.97 -698.20 -2.07 -30.99 16 17 C -0.26 -13.70 9.59 84.03 0.81 -12.89 16 18 H 0.08 3.72 7.88 -2.91 -0.02 3.70 16 19 C -0.05 -2.68 4.94 84.86 0.42 -2.26 16 20 N -0.94 -54.39 11.10 21.65 0.24 -54.15 16 21 Si 0.97 43.63 29.58 68.60 2.03 45.66 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.13 4.58 6.67 86.41 0.58 5.16 16 26 C 0.10 2.72 6.28 86.41 0.54 3.26 16 27 H 0.08 1.16 7.38 -2.38 -0.02 1.14 16 28 H 0.06 1.18 8.04 -2.39 -0.02 1.16 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.96 7.81 -2.39 -0.02 1.94 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.24 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.07 3.00 7.02 -2.39 -0.02 2.98 16 35 H 0.06 2.41 8.14 -2.38 -0.02 2.40 16 36 H 0.07 3.81 5.92 -2.39 -0.01 3.79 16 37 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.08 2.68 7.93 -2.38 -0.02 2.66 16 40 H 0.02 0.81 8.11 -2.39 -0.02 0.79 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.12 2.40 5.22 -2.39 -0.01 2.39 16 Total: -1.00 -72.12 338.59 2.85 -69.27 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.20 Total: 13.93 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 8.28 Total: 24.15 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -7.61 Total: -130.17 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -72.12 2.85 -69.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594294552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.911 kcal (2) G-P(sol) polarization free energy of solvation -72.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds