Wall clock time and date at job start Tue Mar 31 2020 02:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35361 * 127.24514 * 2 1 4 4 N 1.35040 * 107.22589 * 179.97438 * 3 2 1 5 5 C 1.46503 * 124.88340 * 179.97438 * 4 3 2 6 6 N 1.28465 * 110.23038 * 359.97438 * 4 3 2 7 7 C 1.31804 * 110.07488 * 359.97438 * 6 4 3 8 8 C 1.47714 * 126.51961 * 180.02562 * 7 6 4 9 9 O 1.21574 * 119.99974 * 174.05753 * 8 7 6 10 10 N 1.34778 * 120.00148 * 354.05449 * 8 7 6 11 11 C 1.47072 * 120.88335 * 184.13314 * 10 8 7 12 12 C 1.53700 * 108.27701 * 128.75254 * 11 10 8 13 13 N 1.46898 * 109.25608 * 54.08467 * 12 11 10 14 14 C 1.46897 * 111.00434 * 172.60904 * 13 12 11 15 15 C 1.50704 * 109.46700 * 294.30117 * 14 13 12 16 16 H 1.07994 * 120.00111 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99781 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00090 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00005 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47110 * 89.99716 * 19 17 15 21 21 H 1.48500 * 109.47191 * 210.00104 * 19 17 15 22 22 H 1.48510 * 109.46972 * 330.00235 * 19 17 15 23 23 C 1.46903 * 111.26997 * 296.75633 * 13 12 11 24 24 C 1.47083 * 120.87740 * 4.40940 * 10 8 7 25 25 H 1.08994 * 109.47219 * 90.02858 * 1 2 3 26 26 H 1.08998 * 109.46633 * 210.02544 * 1 2 3 27 27 H 1.09000 * 109.46971 * 330.02544 * 1 2 3 28 28 H 1.07993 * 126.38794 * 359.70972 * 3 2 1 29 29 H 1.08997 * 109.47149 * 89.99981 * 5 4 3 30 30 H 1.08999 * 109.47051 * 209.99689 * 5 4 3 31 31 H 1.09000 * 109.47193 * 329.99955 * 5 4 3 32 32 H 1.08995 * 109.63325 * 248.52302 * 11 10 8 33 33 H 1.09001 * 109.62705 * 9.10778 * 11 10 8 34 34 H 1.08996 * 109.64828 * 294.08094 * 12 11 10 35 35 H 1.09004 * 109.42046 * 173.94717 * 12 11 10 36 36 H 1.09001 * 109.47144 * 54.29623 * 14 13 12 37 37 H 1.08997 * 109.47624 * 174.30592 * 14 13 12 38 38 H 0.96999 * 120.00119 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.49431 * 303.14793 * 23 13 12 40 40 H 1.09000 * 109.51867 * 183.07273 * 23 13 12 41 41 H 1.09001 * 109.62892 * 350.89917 * 24 10 8 42 42 H 1.09004 * 109.62497 * 111.48013 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 0.0006 5 6 4.7938 1.4576 0.0002 6 7 3.5999 -0.6694 0.0015 7 6 2.3636 -1.1264 0.0021 8 6 1.9506 -2.5446 0.0037 9 8 0.7753 -2.8354 0.1131 10 7 2.8768 -3.5163 -0.1162 11 6 2.4807 -4.9297 -0.2076 12 6 3.1756 -5.5469 -1.4317 13 7 4.6227 -5.3130 -1.3365 14 6 5.3435 -6.0354 -2.3931 15 6 5.1977 -7.5196 -2.1761 16 1 4.6271 -7.8892 -1.3370 17 6 5.7929 -8.4056 -3.0489 18 7 6.4882 -7.9556 -4.0704 19 14 5.6116 -10.2453 -2.7804 20 1 4.4063 -10.7338 -3.4973 21 1 6.8145 -10.9426 -3.3021 22 1 5.4698 -10.5221 -1.3283 23 6 4.9341 -3.8779 -1.3734 24 6 4.3109 -3.1918 -0.1531 25 1 -0.3633 -0.0005 -1.0276 26 1 -0.3632 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 2.0220 2.1137 -0.0044 29 1 5.0908 1.6672 1.0278 30 1 5.6029 0.9380 -0.5130 31 1 4.5795 2.3943 -0.5143 32 1 2.7889 -5.4556 0.6960 33 1 1.3993 -5.0000 -0.3248 34 1 2.7918 -5.0863 -2.3420 35 1 2.9813 -6.6192 -1.4564 36 1 4.9281 -5.7677 -3.3646 37 1 6.3992 -5.7658 -2.3625 38 1 6.9066 -8.5789 -4.6847 39 1 4.5259 -3.4404 -2.2845 40 1 6.0151 -3.7392 -1.3560 41 1 4.4402 -2.1125 -0.2340 42 1 4.7917 -3.5538 0.7558 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602200409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:19 Heat of formation + Delta-G solvation = 45.422133 kcal Electronic energy + Delta-G solvation = -23712.547529 eV Core-core repulsion = 20308.228060 eV Total energy + Delta-G solvation = -3404.319469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.69858 -40.95158 -38.93998 -36.05534 -34.85740 -34.43582 -33.05985 -31.99820 -30.17428 -29.01235 -27.88033 -26.90793 -24.80002 -24.14038 -23.16557 -21.93066 -21.47271 -20.05515 -18.55685 -18.14624 -17.66167 -17.33171 -16.88645 -16.65227 -16.14713 -15.98523 -15.50255 -15.37563 -15.05582 -14.47949 -14.40328 -14.27887 -14.10648 -13.95798 -13.67287 -13.28508 -13.22331 -13.19319 -12.87747 -12.75415 -12.60162 -12.44027 -12.35679 -12.22307 -11.82514 -11.45281 -11.29602 -10.78830 -10.62116 -10.24857 -9.85652 -9.62233 -9.08518 -8.21501 -6.31733 0.47543 1.17071 1.41908 1.42994 1.54901 1.55093 2.00599 2.29464 2.40455 3.10564 3.20206 3.30029 3.72314 3.92446 4.01564 4.06488 4.21040 4.32976 4.37537 4.40411 4.45854 4.51416 4.56478 4.61152 4.75167 4.79990 4.81579 4.89592 4.91357 4.98791 5.08484 5.16195 5.20763 5.21632 5.44730 5.60597 5.63799 5.99007 6.01920 6.18175 6.35963 6.55452 6.83197 6.84524 7.11509 7.38016 8.89896 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.003521 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.905664 B = 7950.925026 C = 8681.254963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.173 4.173 3 C 0.003 3.997 4 N -0.278 5.278 5 C 0.073 3.927 6 N -0.277 5.277 7 C -0.044 4.044 8 C 0.594 3.406 9 O -0.567 6.567 10 N -0.601 5.601 11 C 0.126 3.874 12 C 0.058 3.942 13 N -0.539 5.539 14 C 0.208 3.792 15 C -0.524 4.524 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.045 3.955 24 C 0.094 3.906 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.229 0.771 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.009 0.991 35 H 0.085 0.915 36 H -0.042 1.042 37 H 0.010 0.990 38 H 0.265 0.735 39 H 0.011 0.989 40 H 0.086 0.914 41 H 0.151 0.849 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 23.509 9.674 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.183 4.183 3 C -0.141 4.141 4 N -0.065 5.065 5 C -0.065 4.065 6 N -0.115 5.115 7 C -0.201 4.201 8 C 0.382 3.618 9 O -0.446 6.446 10 N -0.333 5.333 11 C 0.003 3.997 12 C -0.071 4.071 13 N -0.264 5.264 14 C 0.082 3.918 15 C -0.562 4.562 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.795 3.205 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.084 4.084 24 C -0.029 4.029 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.245 0.755 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.149 0.851 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.027 0.973 35 H 0.103 0.897 36 H -0.025 1.025 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.104 0.896 41 H 0.167 0.833 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.851 22.870 10.043 25.445 hybrid contribution -0.661 -0.816 -1.258 1.638 sum -5.512 22.054 8.785 24.371 Atomic orbital electron populations 1.20140 0.87638 1.03202 1.02272 1.20693 0.98291 0.90613 1.08705 1.23232 0.82644 1.01629 1.06589 1.46011 1.08902 1.03213 1.48423 1.22674 0.83237 0.94295 1.06275 1.72953 1.21949 0.95312 1.21253 1.21712 0.90893 0.94209 1.13315 1.17420 0.84692 0.83724 0.75942 1.90693 1.18019 1.83175 1.52699 1.48155 1.07769 1.06568 1.70764 1.21812 0.99900 0.79724 0.98244 1.22350 0.88088 1.01231 0.95428 1.62042 1.07165 1.08303 1.48842 1.19389 0.92414 0.93551 0.86424 1.21459 1.32420 0.91357 1.11007 0.91588 1.25922 0.94685 1.04342 0.94647 1.70084 1.35059 1.36575 1.15815 0.85362 0.77649 0.78641 0.78849 1.19941 1.20711 1.18724 1.22458 1.00930 0.88287 0.96699 1.22833 0.78046 1.04551 0.97445 0.91717 0.92591 0.88931 0.75456 0.87791 0.88483 0.85142 0.89944 0.88981 0.97284 0.89697 1.02478 0.97187 0.92658 0.97049 0.89602 0.83318 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.54 9.99 71.24 0.71 -0.83 16 2 C -0.17 -4.00 6.25 -19.72 -0.12 -4.12 16 3 C 0.00 0.04 11.40 83.53 0.95 0.99 16 4 N -0.28 -4.54 3.70 -369.46 -1.37 -5.90 16 5 C 0.07 0.40 11.31 127.77 1.44 1.84 16 6 N -0.28 -6.96 8.33 -48.18 -0.40 -7.36 16 7 C -0.04 -1.31 6.90 42.46 0.29 -1.02 16 8 C 0.59 21.13 7.71 86.75 0.67 21.80 16 9 O -0.57 -22.34 14.56 -3.95 -0.06 -22.40 16 10 N -0.60 -21.25 3.00 -820.59 -2.46 -23.72 16 11 C 0.13 4.55 6.61 86.51 0.57 5.13 16 12 C 0.06 2.46 5.47 86.54 0.47 2.93 16 13 N -0.54 -24.47 4.62 -898.87 -4.15 -28.62 16 14 C 0.21 11.44 4.72 85.56 0.40 11.84 16 15 C -0.52 -30.12 8.41 25.60 0.22 -29.91 16 16 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 17 C 0.00 0.12 5.46 84.66 0.46 0.58 16 18 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 19 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.05 1.74 5.62 86.38 0.49 2.22 16 24 C 0.09 3.08 6.47 86.35 0.56 3.64 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.48 6.62 -2.39 -0.02 1.46 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.23 0.91 8.06 -2.91 -0.02 0.89 16 29 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.13 -0.17 8.13 -2.39 -0.02 -0.19 16 32 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.09 3.27 7.09 -2.39 -0.02 3.25 16 34 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.08 3.75 6.67 -2.39 -0.02 3.74 16 36 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16 37 H 0.01 0.58 7.97 -2.39 -0.02 0.57 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.09 3.13 7.99 -2.39 -0.02 3.11 16 41 H 0.15 4.41 3.81 -74.14 -0.28 4.12 16 42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -77.26 339.70 1.73 -75.53 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.74 Total: 7.23 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 7.12 Total: 15.10 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -8.10 Total: -122.22 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.06 Total: -22.40 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -77.26 1.73 -75.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.955 kcal (2) G-P(sol) polarization free energy of solvation -77.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds