Wall clock time and date at job start Tue Mar 31 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46846 * 111.00204 * 2 1 4 4 C 1.53032 * 109.52260 * 185.84105 * 3 2 1 5 5 C 1.53124 * 109.28012 * 300.82015 * 4 3 2 6 6 C 1.53119 * 109.15841 * 57.65244 * 5 4 3 7 7 C 1.46846 * 110.99617 * 124.21105 * 2 1 3 8 8 H 1.08996 * 109.46231 * 294.17554 * 7 2 1 9 9 C 1.50706 * 109.46133 * 54.14559 * 7 2 1 10 10 O 1.21584 * 120.00547 * 19.99321 * 9 7 2 11 11 N 1.32916 * 119.99419 * 199.99887 * 9 7 2 12 12 C 1.33305 * 119.99626 * 179.97438 * 11 9 7 13 13 C 1.40982 * 126.35648 * 359.67992 * 12 11 9 14 14 C 1.35122 * 108.23890 * 179.86309 * 13 12 11 15 15 N 1.36339 * 108.89811 * 0.40985 * 14 13 12 16 16 C 1.46500 * 125.86436 * 179.70593 * 15 14 13 17 17 C 1.50700 * 109.47210 * 275.04412 * 16 15 14 18 18 H 1.08001 * 119.99834 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99986 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99645 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99802 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47104 * 90.00372 * 21 19 17 23 23 H 1.48504 * 109.47193 * 209.99928 * 21 19 17 24 24 H 1.48496 * 109.47330 * 330.00117 * 21 19 17 25 25 N 1.37280 * 126.35708 * 180.02562 * 12 11 9 26 26 H 0.97007 * 126.34392 * 359.96638 * 25 12 11 27 27 H 1.09003 * 109.47063 * 56.04621 * 1 2 3 28 28 H 1.09001 * 109.47694 * 176.04830 * 1 2 3 29 29 H 1.08998 * 109.46874 * 296.05094 * 1 2 3 30 30 H 1.09001 * 109.45990 * 305.85570 * 3 2 1 31 31 H 1.08997 * 109.46419 * 65.82250 * 3 2 1 32 32 H 1.08999 * 109.50710 * 60.75864 * 4 3 2 33 33 H 1.08996 * 109.50945 * 180.88041 * 4 3 2 34 34 H 1.08998 * 109.52523 * 177.55876 * 5 4 3 35 35 H 1.08999 * 109.52008 * 297.75553 * 5 4 3 36 36 H 1.09004 * 109.50189 * 62.29271 * 6 5 4 37 37 H 1.09001 * 109.50740 * 182.36562 * 6 5 4 38 38 H 1.08000 * 125.87960 * 0.03279 * 13 12 11 39 39 H 1.08003 * 125.55334 * 180.15215 * 14 13 12 40 40 H 1.09002 * 109.47038 * 35.04212 * 16 15 14 41 41 H 1.08998 * 109.46768 * 155.04346 * 16 15 14 42 42 H 0.97008 * 119.99724 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1189 0.5368 1.0143 6 6 3.5181 -0.8716 1.0208 7 6 1.9952 -0.7708 1.1338 8 1 1.7324 -0.2709 2.0660 9 6 1.3981 -2.1545 1.1205 10 8 0.9150 -2.5985 0.0969 11 7 1.3994 -2.8894 2.2280 12 6 0.8708 -4.1131 2.2164 13 6 0.2725 -4.7546 1.1128 14 6 -0.1353 -5.9812 1.5066 15 7 0.1713 -6.1463 2.8248 16 6 -0.1112 -7.3379 3.6290 17 6 -1.5173 -7.2600 4.1655 18 1 -2.1382 -6.4080 3.9313 19 6 -2.0107 -8.2761 4.9563 20 7 -3.2376 -8.2078 5.4249 21 14 -0.9364 -9.7493 5.3620 22 1 -0.1792 -9.4809 6.6109 23 1 -1.7915 -10.9488 5.5497 24 1 0.0156 -9.9896 4.2479 25 7 0.8020 -4.9799 3.2787 26 1 1.1295 -4.8157 4.1769 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 -0.3633 0.4513 0.9233 30 1 1.5635 1.9257 -0.8330 31 1 1.7325 1.8608 0.9375 32 1 3.7814 0.8566 -1.0906 33 1 3.9100 2.3510 -0.1311 34 1 5.1998 0.4712 0.8904 35 1 3.8887 1.0353 1.9560 36 1 3.7813 -1.3837 0.0953 37 1 3.9103 -1.4307 1.8703 38 1 0.1618 -4.3386 0.1223 39 1 -0.6280 -6.7103 0.8804 40 1 -0.0079 -8.2280 3.0083 41 1 0.5923 -7.3906 4.4598 42 1 -3.5848 -8.9228 5.9809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609991806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:18 Heat of formation + Delta-G solvation = 74.767448 kcal Electronic energy + Delta-G solvation = -23234.911542 eV Core-core repulsion = 19831.864581 eV Total energy + Delta-G solvation = -3403.046961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98859 -39.60846 -37.48628 -34.32879 -33.42806 -32.85309 -31.40203 -31.18358 -30.66340 -27.38637 -26.57872 -24.18585 -22.89900 -22.58175 -21.55287 -21.32868 -19.82981 -18.86080 -17.47562 -16.99843 -15.94467 -15.78531 -15.15434 -14.93203 -14.78178 -14.56015 -14.38415 -14.22837 -13.93517 -13.46009 -13.07225 -12.98172 -12.86118 -12.83551 -12.58592 -12.27800 -11.95903 -11.59457 -11.45495 -11.21092 -11.06624 -10.84216 -10.74052 -10.57177 -10.33174 -10.08495 -9.69623 -9.24485 -9.12190 -9.08585 -8.36781 -8.06130 -7.00851 -6.56015 -4.65133 1.54123 1.91090 2.90846 2.92838 2.97345 3.04372 3.88040 3.93442 4.18527 4.25436 4.70007 4.74426 4.85619 4.97035 5.09911 5.14054 5.32953 5.40603 5.57741 5.63145 5.64219 5.66667 5.73309 5.82976 5.84298 5.92144 6.00687 6.01722 6.09220 6.19216 6.22140 6.30797 6.39685 6.43200 6.62422 6.87774 7.18009 7.24453 7.34696 7.50400 7.79052 7.98761 8.27057 8.47190 8.95963 9.34755 10.55514 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037623 B = 0.002952 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.038260 B = 9481.818548 C = 9737.559956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.524 5.524 3 C 0.056 3.944 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.099 4.099 7 C 0.095 3.905 8 H 0.056 0.944 9 C 0.500 3.500 10 O -0.566 6.566 11 N -0.701 5.701 12 C 0.473 3.527 13 C -0.329 4.329 14 C 0.166 3.834 15 N -0.340 5.340 16 C 0.228 3.772 17 C -0.566 4.566 18 H 0.086 0.914 19 C 0.084 3.916 20 N -0.875 5.875 21 Si 0.875 3.125 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.263 1.263 25 N -0.465 5.465 26 H 0.446 0.554 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.015 0.985 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.186 0.814 39 H 0.190 0.810 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.081 10.155 -6.753 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.249 5.249 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.138 4.138 7 C -0.016 4.016 8 H 0.074 0.926 9 C 0.285 3.715 10 O -0.447 6.447 11 N -0.465 5.465 12 C 0.223 3.777 13 C -0.361 4.361 14 C 0.021 3.979 15 N -0.125 5.125 16 C 0.110 3.890 17 C -0.604 4.604 18 H 0.104 0.896 19 C -0.123 4.123 20 N -0.510 5.510 21 Si 0.700 3.300 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.188 1.188 25 N -0.188 5.188 26 H 0.293 0.707 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.203 0.797 39 H 0.207 0.793 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.156 9.728 -6.630 16.219 hybrid contribution -0.161 -0.546 1.153 1.285 sum 10.995 9.182 -5.477 15.336 Atomic orbital electron populations 1.22536 0.86920 1.04300 0.99201 1.61654 1.08099 1.12253 1.42893 1.22100 0.95544 0.89408 1.00134 1.21599 0.94629 0.99768 0.99515 1.21592 0.99754 0.95905 0.98463 1.21431 0.92488 0.96985 1.02867 1.21145 0.95577 0.92686 0.92228 0.92619 1.20451 0.78699 0.88389 0.83979 1.90496 1.45018 1.72426 1.36727 1.68712 1.40144 1.05052 1.32620 1.19208 0.86273 0.87954 0.84248 1.22510 1.14767 0.95813 1.03025 1.22901 0.93399 0.98563 0.83019 1.47520 1.49188 1.06998 1.08762 1.20378 0.98751 0.78410 0.91460 1.21239 0.96147 1.09301 1.33739 0.89641 1.24827 0.95047 0.97890 0.94514 1.69857 1.15044 1.33570 1.32560 0.86888 0.80732 0.82630 0.79711 1.19558 1.20167 1.18764 1.44527 1.54488 1.07423 1.12336 0.70704 0.91951 0.89035 0.96611 0.90861 0.95284 0.91062 0.91809 0.91747 0.92222 0.91176 0.90773 0.79715 0.79283 0.91637 0.93721 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.10 60.07 0.55 0.82 16 2 N -0.52 -7.85 4.51 -236.32 -1.07 -8.92 16 3 C 0.06 0.66 5.46 -3.84 -0.02 0.64 16 4 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16 5 C -0.12 -1.27 6.00 -26.61 -0.16 -1.43 16 6 C -0.10 -1.35 5.36 -26.65 -0.14 -1.50 16 7 C 0.09 1.51 2.32 -68.87 -0.16 1.35 16 8 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 9 C 0.50 9.53 6.14 -11.81 -0.07 9.46 16 10 O -0.57 -11.78 11.43 5.29 0.06 -11.72 16 11 N -0.70 -13.50 10.51 -11.59 -0.12 -13.63 16 12 C 0.47 8.88 8.07 -155.19 -1.25 7.63 16 13 C -0.33 -5.91 9.51 -39.65 -0.38 -6.29 16 14 C 0.17 2.68 11.46 -16.66 -0.19 2.49 16 15 N -0.34 -5.97 3.63 -62.23 -0.23 -6.20 16 16 C 0.23 4.28 5.26 -5.19 -0.03 4.25 16 17 C -0.57 -13.53 9.94 -34.44 -0.34 -13.88 16 18 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 19 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.88 -23.73 13.96 55.43 0.77 -22.95 16 21 Si 0.87 17.65 27.47 -169.99 -4.67 12.98 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.26 -4.86 6.54 56.52 0.37 -4.49 16 25 N -0.47 -7.96 7.37 31.32 0.23 -7.73 16 26 H 0.45 6.63 8.96 -182.55 -1.64 4.99 16 27 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 28 H 0.09 1.61 5.61 -51.93 -0.29 1.32 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.19 3.49 5.77 -52.49 -0.30 3.18 16 39 H 0.19 2.36 8.06 -52.48 -0.42 1.93 16 40 H 0.07 1.14 7.20 -51.93 -0.37 0.77 16 41 H 0.04 0.79 7.57 -51.93 -0.39 0.40 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -29.70 338.82 -10.03 -39.73 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -7.66 Total: 9.16 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.46 Total: 4.16 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.41 Total: -59.42 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.06 Total: -11.72 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -4.67 Total: 12.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.70 -10.03 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609991806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.495 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds