Wall clock time and date at job start Tue Mar 31 2020 03:16:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09006 * 109.47192 * 2 1
4 4 C 1.50697 * 109.47455 * 239.99990 * 2 1 3
5 5 H 1.07999 * 120.00457 * 240.00055 * 4 2 1
6 6 C 1.37878 * 119.99898 * 59.99706 * 4 2 1
7 7 N 1.31510 * 120.00125 * 0.02562 * 6 4 2
8 8 Si 1.86806 * 120.00111 * 180.02562 * 6 4 2
9 9 H 1.48498 * 109.47027 * 90.00143 * 8 6 4
10 10 H 1.48496 * 109.47388 * 210.00181 * 8 6 4
11 11 H 1.48505 * 109.46916 * 330.00285 * 8 6 4
12 12 N 1.46902 * 109.47075 * 119.99763 * 2 1 3
13 13 C 1.46896 * 110.99893 * 205.57216 * 12 2 1
14 14 H 1.09002 * 109.40201 * 328.78504 * 13 12 2
15 15 C 1.53078 * 109.39811 * 208.96013 * 13 12 2
16 16 C 1.53351 * 108.42370 * 190.97261 * 15 13 12
17 17 C 1.52919 * 108.67433 * 67.52898 * 16 15 13
18 18 N 1.45755 * 110.48640 * 309.24465 * 17 16 15
19 19 C 1.40163 * 117.94252 * 199.07253 * 18 17 16
20 20 C 1.40406 * 125.97593 * 5.00643 * 19 18 17
21 21 C 1.35237 * 107.86586 * 179.97438 * 20 19 18
22 22 N 1.34965 * 107.86381 * 0.02562 * 21 20 19
23 23 C 1.46497 * 125.97324 * 180.02562 * 22 21 20
24 24 N 1.31222 * 125.97141 * 184.69085 * 19 18 17
25 25 C 1.33354 * 124.10876 * 19.08139 * 18 17 16
26 26 O 1.21292 * 118.24483 * 177.77295 * 25 18 17
27 27 H 1.09003 * 109.46833 * 63.03372 * 1 2 3
28 28 H 1.08995 * 109.46817 * 183.02729 * 1 2 3
29 29 H 1.08998 * 109.47060 * 303.02968 * 1 2 3
30 30 H 0.97003 * 120.00332 * 179.97438 * 7 6 4
31 31 H 1.00897 * 111.00314 * 329.52739 * 12 2 1
32 32 H 1.08992 * 109.67235 * 310.70285 * 15 13 12
33 33 H 1.09001 * 109.67352 * 71.24139 * 15 13 12
34 34 H 1.08994 * 109.60098 * 187.28814 * 16 15 13
35 35 H 1.09004 * 109.60309 * 307.60917 * 16 15 13
36 36 H 1.08993 * 109.29954 * 69.56069 * 17 16 15
37 37 H 1.09000 * 109.29652 * 188.93444 * 17 16 15
38 38 H 1.07999 * 126.06397 * 359.94253 * 20 19 18
39 39 H 1.08004 * 126.06396 * 179.97438 * 21 20 19
40 40 H 1.08997 * 109.47543 * 90.00162 * 23 22 21
41 41 H 1.09006 * 109.46670 * 209.99660 * 23 22 21
42 42 H 1.08996 * 109.47271 * 329.99611 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1314
6 6 1.6993 -0.2394 -2.4827
7 7 0.9436 0.8301 -2.6034
8 14 2.3215 -1.1203 -4.0080
9 1 1.3429 -2.1617 -4.4119
10 1 2.4867 -0.1414 -5.1123
11 1 3.6295 -1.7583 -3.7121
12 7 2.0197 -0.6925 1.1995
13 6 3.3615 -0.2218 1.5682
14 1 3.9034 0.0684 0.6680
15 6 4.1185 -1.3480 2.2765
16 6 5.3949 -0.7616 2.8920
17 6 5.0011 0.1889 4.0232
18 7 3.9983 1.1415 3.5633
19 6 3.8191 2.3165 4.3061
20 6 4.5869 2.7193 5.4105
21 6 4.0998 3.9039 5.8446
22 7 3.0632 4.2417 5.0491
23 6 2.2474 5.4529 5.1667
24 7 2.9080 3.2352 4.0875
25 6 3.2407 0.9652 2.4801
26 8 2.4095 1.8086 2.2175
27 1 -0.3633 0.4660 -0.9160
28 1 -0.3633 -1.0262 0.0543
29 1 -0.3633 0.5601 0.8616
30 1 0.7095 1.1618 -3.4844
31 1 1.3748 -0.5845 1.9679
32 1 3.4937 -1.7724 3.0624
33 1 4.3809 -2.1232 1.5566
34 1 6.0126 -1.5670 3.2893
35 1 5.9512 -0.2161 2.1297
36 1 4.5954 -0.3883 4.8540
37 1 5.8840 0.7307 4.3622
38 1 5.4185 2.1787 5.8378
39 1 4.4736 4.4772 6.6801
40 1 2.6892 6.2482 4.5665
41 1 1.2379 5.2469 4.8105
42 1 2.2078 5.7644 6.2104
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000610342823.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:16:33
Heat of formation + Delta-G solvation = 69.214735 kcal
Electronic energy + Delta-G solvation = -24108.234195 eV
Core-core repulsion = 20704.946450 eV
Total energy + Delta-G solvation = -3403.287744 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.39085 -39.91413 -36.30411 -35.90768 -33.81822 -32.34058 -31.34471 -30.08769
-29.27845 -26.75041 -26.40154 -25.02892 -23.57153 -22.73396 -20.70180 -20.57040
-20.11164 -18.24738 -17.43056 -16.38904 -15.98530 -15.88547 -15.63936 -15.11872
-14.75323 -14.12993 -14.01473 -13.90784 -13.78060 -13.24288 -13.12974 -12.72605
-12.67116 -12.64119 -12.50444 -11.64483 -11.47884 -11.14315 -11.10564 -10.86074
-10.68347 -10.55668 -10.43433 -10.23742 -10.08109 -9.87039 -9.74032 -9.34069
-9.00549 -8.73670 -8.29164 -7.99121 -7.24660 -5.86440 -3.91375 1.96420
2.34506 2.61260 3.23715 3.38076 3.43211 3.44185 3.47207 4.50514
4.51800 4.70606 4.77867 4.83612 4.93792 5.10007 5.13135 5.27168
5.33463 5.41725 5.44111 5.52378 5.62518 5.72028 5.76192 5.87640
5.95908 6.03748 6.16718 6.40285 6.50544 6.95008 6.98384 7.04669
7.11306 7.18986 7.40695 7.62174 7.84820 7.97846 8.03917 8.32281
8.45414 8.57838 8.76540 9.15856 9.72719 11.19538
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.019622 B = 0.004446 C = 0.003890
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1426.644665 B = 6296.839163 C = 7196.930238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.208 3.792
3 H 0.020 0.980
4 C -0.496 4.496
5 H 0.061 0.939
6 C 0.055 3.945
7 N -0.894 5.894
8 Si 0.895 3.105
9 H -0.282 1.282
10 H -0.289 1.289
11 H -0.275 1.275
12 N -0.654 5.654
13 C 0.091 3.909
14 H 0.115 0.885
15 C -0.110 4.110
16 C -0.136 4.136
17 C 0.119 3.881
18 N -0.523 5.523
19 C 0.288 3.712
20 C -0.292 4.292
21 C 0.063 3.937
22 N -0.382 5.382
23 C 0.106 3.894
24 N -0.264 5.264
25 C 0.473 3.527
26 O -0.487 6.487
27 H 0.089 0.911
28 H 0.030 0.970
29 H 0.007 0.993
30 H 0.258 0.742
31 H 0.321 0.679
32 H 0.068 0.932
33 H 0.084 0.916
34 H 0.087 0.913
35 H 0.074 0.926
36 H 0.069 0.931
37 H 0.078 0.922
38 H 0.148 0.852
39 H 0.173 0.827
40 H 0.072 0.928
41 H 0.089 0.911
42 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.789 3.549 19.188 21.831
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.101 3.899
3 H 0.038 0.962
4 C -0.535 4.535
5 H 0.079 0.921
6 C -0.146 4.146
7 N -0.533 5.533
8 Si 0.723 3.277
9 H -0.208 1.208
10 H -0.215 1.215
11 H -0.200 1.200
12 N -0.283 5.283
13 C -0.023 4.023
14 H 0.132 0.868
15 C -0.149 4.149
16 C -0.174 4.174
17 C -0.004 4.004
18 N -0.256 5.256
19 C 0.032 3.968
20 C -0.324 4.324
21 C -0.084 4.084
22 N -0.165 5.165
23 C -0.035 4.035
24 N -0.093 5.093
25 C 0.259 3.741
26 O -0.355 6.355
27 H 0.108 0.892
28 H 0.049 0.951
29 H 0.026 0.974
30 H 0.068 0.932
31 H 0.138 0.862
32 H 0.086 0.914
33 H 0.102 0.898
34 H 0.106 0.894
35 H 0.093 0.907
36 H 0.087 0.913
37 H 0.096 0.904
38 H 0.165 0.835
39 H 0.190 0.810
40 H 0.090 0.910
41 H 0.108 0.892
42 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 8.367 3.986 17.701 19.980
hybrid contribution 0.832 0.338 0.143 0.910
sum 9.199 4.324 17.844 20.536
Atomic orbital electron populations
1.21894 0.98314 0.98736 1.00959 1.19294 0.91757 0.93083 0.85730
0.96211 1.21208 1.30603 1.11982 0.89719 0.92063 1.24968 0.95525
0.95135 0.98963 1.69913 1.37221 1.23044 1.23143 0.86554 0.79148
0.79238 0.82733 1.20820 1.21506 1.19989 1.61113 1.00613 1.58542
1.08040 1.21652 0.95568 0.88921 0.96183 0.86757 1.21710 0.94687
0.98240 1.00243 1.21926 0.98925 0.98786 0.97756 1.21494 0.90796
0.90462 0.97642 1.45154 1.38331 1.16690 1.25392 1.19628 0.94943
0.89191 0.93033 1.21064 1.08014 1.00294 1.03009 1.22373 0.91230
0.97104 0.97689 1.48581 1.25755 1.18461 1.23725 1.21785 0.96175
0.82987 1.02585 1.78317 1.22007 0.98517 1.10411 1.22433 0.80775
0.90079 0.80770 1.90844 1.32789 1.42192 1.69710 0.89224 0.95114
0.97388 0.93155 0.86247 0.91365 0.89755 0.89407 0.90710 0.91297
0.90398 0.83454 0.81009 0.90958 0.89232 0.89737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.74 8.98 37.16 0.33 -3.41 16
2 C 0.21 5.62 2.12 -68.86 -0.15 5.47 16
3 H 0.02 0.62 6.84 -51.93 -0.36 0.26 16
4 C -0.50 -14.12 8.54 -34.44 -0.29 -14.42 16
5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16
6 C 0.05 1.57 5.30 -17.82 -0.09 1.48 16
7 N -0.89 -26.87 11.30 55.43 0.63 -26.24 16
8 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16
9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
11 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16
12 N -0.65 -14.67 5.94 -102.40 -0.61 -15.28 16
13 C 0.09 1.77 2.54 -69.08 -0.18 1.59 16
14 H 0.11 2.47 7.62 -51.93 -0.40 2.07 16
15 C -0.11 -1.56 5.64 -26.51 -0.15 -1.71 16
16 C -0.14 -1.44 6.02 -26.59 -0.16 -1.60 16
17 C 0.12 1.32 5.95 -4.48 -0.03 1.29 16
18 N -0.52 -8.59 3.05 -116.21 -0.35 -8.95 16
19 C 0.29 4.89 7.40 -154.38 -1.14 3.75 16
20 C -0.29 -3.65 9.85 -39.83 -0.39 -4.04 16
21 C 0.06 0.69 11.48 -17.24 -0.20 0.49 16
22 N -0.38 -5.27 4.01 -68.18 -0.27 -5.55 16
23 C 0.11 0.98 11.47 59.85 0.69 1.66 16
24 N -0.26 -5.04 10.44 31.44 0.33 -4.72 16
25 C 0.47 9.57 6.88 -11.87 -0.08 9.49 16
26 O -0.49 -12.12 13.60 5.55 0.08 -12.04 16
27 H 0.09 2.59 6.00 -51.93 -0.31 2.28 16
28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16
30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
31 H 0.32 7.05 7.99 -39.29 -0.31 6.74 16
32 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16
33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16
36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
37 H 0.08 0.70 7.04 -51.93 -0.37 0.33 16
38 H 0.15 1.37 7.32 -52.49 -0.38 0.98 16
39 H 0.17 1.05 8.06 -52.48 -0.42 0.62 16
40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16
LS Contribution 339.73 15.07 5.12 5.12
Total: -1.00 -37.09 339.73 -8.27 -45.36
By element:
Atomic # 1 Polarization: 11.60 SS G_CDS: -6.32 Total: 5.28 kcal
Atomic # 6 Polarization: 1.88 SS G_CDS: -1.84 Total: 0.04 kcal
Atomic # 7 Polarization: -60.45 SS G_CDS: -0.28 Total: -60.73 kcal
Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal
Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -37.09 -8.27 -45.36 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610342823.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.573 kcal
(2) G-P(sol) polarization free energy of solvation -37.092 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.482 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.215 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds