Wall clock time and date at job start Tue Mar 31 2020 03:16:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09006 * 109.47192 * 2 1
4 4 C 1.50697 * 109.47455 * 239.99990 * 2 1 3
5 5 H 1.07999 * 120.00457 * 240.00055 * 4 2 1
6 6 C 1.37878 * 119.99898 * 59.99706 * 4 2 1
7 7 N 1.31510 * 120.00125 * 0.02562 * 6 4 2
8 8 Si 1.86806 * 120.00111 * 180.02562 * 6 4 2
9 9 H 1.48498 * 109.47027 * 90.00143 * 8 6 4
10 10 H 1.48496 * 109.47388 * 210.00181 * 8 6 4
11 11 H 1.48505 * 109.46916 * 330.00285 * 8 6 4
12 12 N 1.46902 * 109.47075 * 119.99763 * 2 1 3
13 13 C 1.46896 * 110.99893 * 205.57216 * 12 2 1
14 14 H 1.09002 * 109.40201 * 328.78504 * 13 12 2
15 15 C 1.53078 * 109.39811 * 208.96013 * 13 12 2
16 16 C 1.53351 * 108.42370 * 190.97261 * 15 13 12
17 17 C 1.52919 * 108.67433 * 67.52898 * 16 15 13
18 18 N 1.45755 * 110.48640 * 309.24465 * 17 16 15
19 19 C 1.40163 * 117.94252 * 199.07253 * 18 17 16
20 20 C 1.40406 * 125.97593 * 5.00643 * 19 18 17
21 21 C 1.35237 * 107.86586 * 179.97438 * 20 19 18
22 22 N 1.34965 * 107.86381 * 0.02562 * 21 20 19
23 23 C 1.46497 * 125.97324 * 180.02562 * 22 21 20
24 24 N 1.31222 * 125.97141 * 184.69085 * 19 18 17
25 25 C 1.33354 * 124.10876 * 19.08139 * 18 17 16
26 26 O 1.21292 * 118.24483 * 177.77295 * 25 18 17
27 27 H 1.09003 * 109.46833 * 63.03372 * 1 2 3
28 28 H 1.08995 * 109.46817 * 183.02729 * 1 2 3
29 29 H 1.08998 * 109.47060 * 303.02968 * 1 2 3
30 30 H 0.97003 * 120.00332 * 179.97438 * 7 6 4
31 31 H 1.00897 * 111.00314 * 329.52739 * 12 2 1
32 32 H 1.08992 * 109.67235 * 310.70285 * 15 13 12
33 33 H 1.09001 * 109.67352 * 71.24139 * 15 13 12
34 34 H 1.08994 * 109.60098 * 187.28814 * 16 15 13
35 35 H 1.09004 * 109.60309 * 307.60917 * 16 15 13
36 36 H 1.08993 * 109.29954 * 69.56069 * 17 16 15
37 37 H 1.09000 * 109.29652 * 188.93444 * 17 16 15
38 38 H 1.07999 * 126.06397 * 359.94253 * 20 19 18
39 39 H 1.08004 * 126.06396 * 179.97438 * 21 20 19
40 40 H 1.08997 * 109.47543 * 90.00162 * 23 22 21
41 41 H 1.09006 * 109.46670 * 209.99660 * 23 22 21
42 42 H 1.08996 * 109.47271 * 329.99611 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1314
6 6 1.6993 -0.2394 -2.4827
7 7 0.9436 0.8301 -2.6034
8 14 2.3215 -1.1203 -4.0080
9 1 1.3429 -2.1617 -4.4119
10 1 2.4867 -0.1414 -5.1123
11 1 3.6295 -1.7583 -3.7121
12 7 2.0197 -0.6925 1.1995
13 6 3.3615 -0.2218 1.5682
14 1 3.9034 0.0684 0.6680
15 6 4.1185 -1.3480 2.2765
16 6 5.3949 -0.7616 2.8920
17 6 5.0011 0.1889 4.0232
18 7 3.9983 1.1415 3.5633
19 6 3.8191 2.3165 4.3061
20 6 4.5869 2.7193 5.4105
21 6 4.0998 3.9039 5.8446
22 7 3.0632 4.2417 5.0491
23 6 2.2474 5.4529 5.1667
24 7 2.9080 3.2352 4.0875
25 6 3.2407 0.9652 2.4801
26 8 2.4095 1.8086 2.2175
27 1 -0.3633 0.4660 -0.9160
28 1 -0.3633 -1.0262 0.0543
29 1 -0.3633 0.5601 0.8616
30 1 0.7095 1.1618 -3.4844
31 1 1.3748 -0.5845 1.9679
32 1 3.4937 -1.7724 3.0624
33 1 4.3809 -2.1232 1.5566
34 1 6.0126 -1.5670 3.2893
35 1 5.9512 -0.2161 2.1297
36 1 4.5954 -0.3883 4.8540
37 1 5.8840 0.7307 4.3622
38 1 5.4185 2.1787 5.8378
39 1 4.4736 4.4772 6.6801
40 1 2.6892 6.2482 4.5665
41 1 1.2379 5.2469 4.8105
42 1 2.2078 5.7644 6.2104
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000610342823.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:16:32
Heat of formation + Delta-G solvation = 41.836239 kcal
Electronic energy + Delta-G solvation = -24109.421415 eV
Core-core repulsion = 20704.946450 eV
Total energy + Delta-G solvation = -3404.474965 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-42.53005 -41.21323 -37.73447 -37.58737 -35.36204 -33.93862 -32.67352 -31.28235
-30.78091 -28.29564 -27.37677 -27.27295 -24.87618 -23.91997 -22.33019 -21.72959
-21.55825 -19.49344 -18.51855 -18.30150 -17.45038 -17.12896 -17.04239 -16.73822
-16.12836 -15.62317 -15.43628 -15.26950 -14.94514 -14.64268 -14.44462 -14.21246
-13.95729 -13.57267 -13.49892 -13.27823 -12.95137 -12.81212 -12.75118 -12.56259
-12.31601 -12.22725 -12.02097 -11.95176 -11.63305 -11.51089 -11.20437 -11.14809
-10.74192 -10.51443 -9.79541 -9.18677 -9.08778 -8.07751 -6.22012 0.93844
1.34042 1.36737 1.42019 1.44059 1.54646 2.16781 2.20688 2.43840
3.18283 3.41966 3.48522 3.77499 3.88590 4.01113 4.06188 4.15180
4.41258 4.42986 4.50169 4.58251 4.65233 4.70432 4.76249 4.77307
4.86745 4.88867 4.93992 5.03538 5.09849 5.18675 5.25153 5.35656
5.50151 5.64861 5.78577 5.79658 6.13957 6.24923 6.26176 6.32927
6.71546 6.90237 6.91932 7.16842 7.47071 8.97984
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.019622 B = 0.004446 C = 0.003890
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1426.644665 B = 6296.839163 C = 7196.930238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.218 3.782
3 H -0.031 1.031
4 C -0.510 4.510
5 H 0.063 0.937
6 C 0.001 3.999
7 N -0.928 5.928
8 Si 0.968 3.032
9 H -0.273 1.273
10 H -0.287 1.287
11 H -0.262 1.262
12 N -0.647 5.647
13 C 0.090 3.910
14 H 0.083 0.917
15 C -0.101 4.101
16 C -0.126 4.126
17 C 0.108 3.892
18 N -0.518 5.518
19 C 0.258 3.742
20 C -0.296 4.296
21 C 0.081 3.919
22 N -0.389 5.389
23 C 0.098 3.902
24 N -0.344 5.344
25 C 0.470 3.530
26 O -0.549 6.549
27 H 0.063 0.937
28 H 0.041 0.959
29 H 0.010 0.990
30 H 0.260 0.740
31 H 0.321 0.679
32 H 0.078 0.922
33 H 0.086 0.914
34 H 0.135 0.865
35 H 0.067 0.933
36 H 0.093 0.907
37 H 0.110 0.890
38 H 0.184 0.816
39 H 0.229 0.771
40 H 0.079 0.921
41 H 0.069 0.931
42 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.613 2.449 21.744 25.256
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.110 3.890
3 H -0.014 1.014
4 C -0.548 4.548
5 H 0.081 0.919
6 C -0.196 4.196
7 N -0.569 5.569
8 Si 0.793 3.207
9 H -0.199 1.199
10 H -0.213 1.213
11 H -0.186 1.186
12 N -0.276 5.276
13 C -0.024 4.024
14 H 0.101 0.899
15 C -0.139 4.139
16 C -0.164 4.164
17 C -0.012 4.012
18 N -0.248 5.248
19 C 0.003 3.997
20 C -0.327 4.327
21 C -0.066 4.066
22 N -0.173 5.173
23 C -0.042 4.042
24 N -0.174 5.174
25 C 0.256 3.744
26 O -0.423 6.423
27 H 0.082 0.918
28 H 0.060 0.940
29 H 0.029 0.971
30 H 0.069 0.931
31 H 0.137 0.863
32 H 0.097 0.903
33 H 0.105 0.895
34 H 0.153 0.847
35 H 0.086 0.914
36 H 0.111 0.889
37 H 0.128 0.872
38 H 0.201 0.799
39 H 0.245 0.755
40 H 0.098 0.902
41 H 0.088 0.912
42 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 11.247 2.857 20.316 23.397
hybrid contribution -0.024 0.817 -0.513 0.965
sum 11.223 3.674 19.803 23.057
Atomic orbital electron populations
1.21729 0.98368 0.98968 0.99708 1.18978 0.91711 0.90658 0.87691
1.01367 1.21450 1.30795 1.12062 0.90539 0.91852 1.25889 0.95552
0.95798 1.02402 1.70085 1.38307 1.24575 1.23895 0.85403 0.79089
0.78005 0.78191 1.19891 1.21323 1.18630 1.61094 1.02011 1.57700
1.06778 1.21720 0.93892 0.91113 0.95719 0.89943 1.21677 0.95903
0.96135 1.00175 1.21959 0.97207 0.99818 0.97394 1.21971 0.90778
0.90151 0.98297 1.45144 1.38025 1.17587 1.24050 1.20106 0.95970
0.89092 0.94539 1.21507 1.08589 1.01046 1.01527 1.23289 0.89131
0.96623 0.97543 1.48882 1.26934 1.18390 1.23102 1.22109 0.94747
0.81731 1.05630 1.78164 1.24640 1.00900 1.13660 1.22374 0.80706
0.89418 0.81856 1.90813 1.35671 1.44097 1.71687 0.91805 0.94038
0.97076 0.93147 0.86259 0.90319 0.89538 0.84744 0.91437 0.88897
0.87236 0.79902 0.75475 0.90218 0.91239 0.85041
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -7.26 8.98 71.98 0.65 -6.61 16
2 C 0.22 12.47 2.12 44.17 0.09 12.57 16
3 H -0.03 -2.10 6.84 -2.38 -0.02 -2.11 16
4 C -0.51 -30.02 8.54 25.60 0.22 -29.81 16
5 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16
6 C 0.00 0.06 5.30 84.66 0.45 0.51 16
7 N -0.93 -58.15 11.30 21.45 0.24 -57.91 16
8 Si 0.97 45.81 29.54 68.60 2.03 47.84 16
9 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16
10 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16
11 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16
12 N -0.65 -30.45 5.94 -477.88 -2.84 -33.29 16
13 C 0.09 3.64 2.54 44.03 0.11 3.75 16
14 H 0.08 3.83 7.62 -2.39 -0.02 3.81 16
15 C -0.10 -2.73 5.64 30.74 0.17 -2.55 16
16 C -0.13 -2.29 6.02 30.68 0.18 -2.11 16
17 C 0.11 2.07 5.95 86.49 0.51 2.58 16
18 N -0.52 -16.93 3.05 -640.76 -1.95 -18.88 16
19 C 0.26 8.70 7.40 133.32 0.99 9.68 16
20 C -0.30 -6.50 9.85 22.11 0.22 -6.28 16
21 C 0.08 1.48 11.48 83.52 0.96 2.44 16
22 N -0.39 -10.40 4.01 -369.62 -1.48 -11.88 16
23 C 0.10 1.71 11.47 127.77 1.47 3.18 16
24 N -0.34 -13.66 10.44 -54.45 -0.57 -14.23 16
25 C 0.47 20.03 6.88 87.71 0.60 20.64 16
26 O -0.55 -29.68 13.60 -3.07 -0.04 -29.73 16
27 H 0.06 3.90 6.00 -2.39 -0.01 3.89 16
28 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16
29 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16
30 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
31 H 0.32 14.85 7.99 -89.70 -0.72 14.14 16
32 H 0.08 1.98 8.13 -2.39 -0.02 1.96 16
33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16
34 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16
35 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16
36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
37 H 0.11 1.46 7.04 -2.39 -0.02 1.44 16
38 H 0.18 2.47 7.32 -2.91 -0.02 2.45 16
39 H 0.23 1.39 8.06 -2.91 -0.02 1.37 16
40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
41 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16
42 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16
Total: -1.00 -90.15 339.73 2.31 -87.84
By element:
Atomic # 1 Polarization: 21.95 SS G_CDS: 0.31 Total: 22.26 kcal
Atomic # 6 Polarization: 1.37 SS G_CDS: 6.62 Total: 7.99 kcal
Atomic # 7 Polarization: -129.59 SS G_CDS: -6.60 Total: -136.19 kcal
Atomic # 8 Polarization: -29.68 SS G_CDS: -0.04 Total: -29.73 kcal
Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal
Total: -90.15 2.31 -87.84 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610342823.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.675 kcal
(2) G-P(sol) polarization free energy of solvation -90.151 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.524 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.839 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.836 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds