Wall clock time and date at job start Tue Mar 31 2020 02:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46933 * 2 1 4 4 C 1.38048 * 126.29187 * 269.99824 * 3 2 1 5 5 C 1.47438 * 126.41266 * 359.96103 * 4 3 2 6 6 O 1.21603 * 119.99738 * 42.62770 * 5 4 3 7 7 N 1.34777 * 119.99696 * 222.63397 * 5 4 3 8 8 C 1.46963 * 120.59149 * 185.44152 * 7 5 4 9 9 C 1.53367 * 108.63521 * 235.24576 * 8 7 5 10 10 N 1.46969 * 108.63181 * 310.57461 * 9 8 7 11 11 C 1.36939 * 120.59322 * 235.20419 * 10 9 8 12 12 H 1.08006 * 119.99948 * 27.35132 * 11 10 9 13 13 C 1.38810 * 119.99679 * 207.63178 * 11 10 9 14 14 N 1.31608 * 120.00526 * 16.18853 * 13 11 10 15 15 Si 1.86807 * 119.99638 * 196.19070 * 13 11 10 16 16 H 1.48505 * 109.47156 * 89.99888 * 15 13 11 17 17 H 1.48500 * 109.47199 * 209.99608 * 15 13 11 18 18 H 1.48494 * 109.47078 * 329.99851 * 15 13 11 19 19 C 1.46962 * 118.81333 * 55.48061 * 10 9 8 20 20 C 1.46959 * 120.59564 * 5.45677 * 7 5 4 21 21 C 1.41283 * 107.17493 * 180.22191 * 4 3 2 22 22 N 1.30459 * 108.01946 * 359.59208 * 21 4 3 23 23 N 1.34256 * 126.29554 * 89.97657 * 3 2 1 24 24 C 1.46502 * 125.75360 * 0.02562 * 23 3 2 25 25 H 1.09005 * 109.47022 * 300.00030 * 1 2 3 26 26 H 1.09005 * 109.47334 * 60.00378 * 1 2 3 27 27 H 1.09001 * 109.46980 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47034 * 239.99771 * 2 1 3 29 29 H 1.09001 * 109.46886 * 119.99811 * 2 1 3 30 30 H 1.09007 * 109.61148 * 115.49622 * 8 7 5 31 31 H 1.09002 * 109.60918 * 354.99186 * 8 7 5 32 32 H 1.08997 * 109.60938 * 190.83119 * 9 8 7 33 33 H 1.08993 * 109.60831 * 70.31866 * 9 8 7 34 34 H 0.97003 * 120.00738 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.60831 * 64.25967 * 19 10 9 36 36 H 1.08995 * 109.60988 * 184.77853 * 19 10 9 37 37 H 1.09003 * 109.61179 * 244.49966 * 20 7 5 38 38 H 1.08997 * 109.61100 * 5.01413 * 20 7 5 39 39 H 1.08000 * 125.99557 * 179.73750 * 21 4 3 40 40 H 1.09004 * 109.46827 * 89.99848 * 24 23 3 41 41 H 1.09002 * 109.47459 * 210.00192 * 24 23 3 42 42 H 1.09004 * 109.46893 * 330.00327 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3047 2.1912 -1.1127 5 6 2.1594 1.7776 -2.5204 6 8 1.1806 1.1468 -2.8708 7 7 3.1115 2.0987 -3.4187 8 6 2.9255 1.7983 -4.8453 9 6 4.1150 0.9594 -5.3285 10 7 5.3578 1.6158 -4.8990 11 6 6.3255 1.9412 -5.8117 12 1 6.0547 2.1397 -6.8383 13 6 7.6550 2.0103 -5.4187 14 7 8.0344 1.4665 -4.2818 15 14 8.9059 2.8752 -6.5036 16 1 8.9787 4.3101 -6.1281 17 1 10.2389 2.2472 -6.3197 18 1 8.4944 2.7559 -7.9254 19 6 5.5462 1.9111 -3.4718 20 6 4.3542 2.7550 -2.9892 21 6 2.7545 3.4480 -0.6500 22 7 2.7406 3.4265 0.6543 23 7 2.2968 2.1702 1.0821 24 6 2.1462 1.7446 2.4758 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.8794 2.7283 -5.4120 31 1 2.0016 1.2367 -4.9834 32 1 4.0953 0.8892 -6.4161 33 1 4.0593 -0.0386 -4.8940 34 1 8.9635 1.5144 -4.0073 35 1 5.5900 0.9792 -2.9081 36 1 6.4719 2.4696 -3.3328 37 1 4.4099 3.7531 -3.4238 38 1 4.3739 2.8252 -1.9017 39 1 3.0548 4.2815 -1.2677 40 1 3.0780 1.2968 2.8215 41 1 1.9062 2.6084 3.0957 42 1 1.3425 1.0116 2.5470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610397045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:33 Heat of formation + Delta-G solvation = 50.564021 kcal Electronic energy + Delta-G solvation = -24259.025927 eV Core-core repulsion = 20854.929427 eV Total energy + Delta-G solvation = -3404.096500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.57076 -40.52814 -38.31155 -35.73591 -35.15174 -34.05862 -33.09478 -31.83105 -30.35885 -28.81204 -27.82677 -25.65752 -24.81395 -24.34434 -23.32532 -21.93832 -21.07241 -19.81673 -18.88056 -17.85035 -17.22566 -16.82938 -16.77658 -16.53528 -15.90423 -15.50711 -15.40982 -15.26061 -15.11134 -14.94533 -14.60983 -14.31909 -13.82440 -13.67080 -13.45727 -13.32674 -13.26571 -13.02990 -12.65989 -12.55690 -12.46768 -12.19755 -12.10691 -11.98375 -11.86293 -11.81246 -11.63492 -10.83571 -10.57959 -10.35197 -9.81745 -9.53291 -8.64521 -7.86218 -5.35075 0.57482 1.18347 1.43732 1.50427 1.51732 1.60313 1.98794 2.33838 2.53784 3.28195 3.46761 3.47485 3.62741 3.88792 3.95138 4.22850 4.28035 4.29182 4.31364 4.40212 4.42628 4.49705 4.59244 4.63960 4.65680 4.67676 4.72647 4.81967 4.85973 4.97680 5.08852 5.13150 5.25773 5.35313 5.39142 5.56997 5.63431 5.71200 5.91342 6.36600 6.51278 6.56591 7.11932 7.26095 7.80112 8.33530 9.18483 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.004335 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.173013 B = 6457.997272 C = 7073.861327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 C 0.149 3.851 4 C -0.313 4.313 5 C 0.592 3.408 6 O -0.580 6.580 7 N -0.597 5.597 8 C 0.108 3.892 9 C 0.132 3.868 10 N -0.608 5.608 11 C -0.263 4.263 12 H 0.073 0.927 13 C -0.047 4.047 14 N -0.936 5.936 15 Si 0.970 3.030 16 H -0.283 1.283 17 H -0.298 1.298 18 H -0.269 1.269 19 C 0.165 3.835 20 C 0.099 3.901 21 C 0.082 3.918 22 N -0.318 5.318 23 N -0.358 5.358 24 C 0.084 3.916 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.007 0.993 34 H 0.251 0.749 35 H -0.009 1.009 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.202 0.798 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.080 0.413 12.840 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C 0.015 3.985 4 C -0.328 4.328 5 C 0.382 3.618 6 O -0.462 6.462 7 N -0.328 5.328 8 C -0.016 4.016 9 C 0.006 3.994 10 N -0.332 5.332 11 C -0.393 4.393 12 H 0.090 0.910 13 C -0.243 4.243 14 N -0.583 5.583 15 Si 0.798 3.202 16 H -0.209 1.209 17 H -0.224 1.224 18 H -0.194 1.194 19 C 0.039 3.961 20 C -0.025 4.025 21 C -0.105 4.105 22 N -0.137 5.137 23 N -0.138 5.138 24 C -0.055 4.055 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.026 0.974 34 H 0.060 0.940 35 H 0.009 0.991 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.218 0.782 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.196 0.724 13.939 19.209 hybrid contribution 1.061 -0.116 -1.392 1.754 sum -12.136 0.609 12.548 17.467 Atomic orbital electron populations 1.21640 0.92296 1.03358 1.02080 1.20364 0.97937 0.87114 1.04546 1.21714 0.94976 0.95627 0.86170 1.19992 1.21685 0.98024 0.93087 1.17590 0.81631 0.78037 0.84571 1.90663 1.32073 1.42633 1.80794 1.47917 1.17876 1.59313 1.07723 1.22037 0.99055 1.00321 0.80213 1.21374 0.86164 0.93147 0.98745 1.44293 1.16723 1.68344 1.03816 1.19594 0.86797 1.40003 0.92894 0.90977 1.25783 0.98706 1.00676 0.99098 1.70152 1.16255 1.46843 1.25011 0.85229 0.77931 0.78153 0.78878 1.20923 1.22441 1.19385 1.21102 0.96160 0.95367 0.83482 1.22580 0.83455 0.96359 1.00114 1.24218 0.96722 0.97568 0.91944 1.77102 1.22954 1.00593 1.13097 1.48605 1.48863 1.08810 1.07498 1.22389 1.05018 1.03010 0.75093 0.91447 0.93834 0.89883 0.90959 0.87286 0.90848 0.89249 0.90652 0.97448 0.93981 0.99051 0.90419 0.90916 0.88952 0.78160 0.88945 0.87851 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 71.98 0.71 -1.85 16 2 C -0.06 -1.29 5.45 29.85 0.16 -1.13 16 3 C 0.15 3.95 6.26 42.14 0.26 4.21 16 4 C -0.31 -9.95 5.14 -20.15 -0.10 -10.06 16 5 C 0.59 21.72 7.26 86.67 0.63 22.35 16 6 O -0.58 -23.34 15.47 -4.04 -0.06 -23.40 16 7 N -0.60 -22.28 2.95 -821.02 -2.42 -24.70 16 8 C 0.11 3.97 6.60 86.41 0.57 4.54 16 9 C 0.13 5.62 6.67 86.41 0.58 6.20 16 10 N -0.61 -30.36 2.97 -697.36 -2.07 -32.43 16 11 C -0.26 -14.12 9.59 84.03 0.81 -13.32 16 12 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 13 C -0.05 -2.58 4.95 84.86 0.42 -2.16 16 14 N -0.94 -54.29 11.05 21.65 0.24 -54.05 16 15 Si 0.97 43.81 29.58 68.60 2.03 45.84 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 C 0.17 7.92 5.55 86.57 0.48 8.40 16 20 C 0.10 3.71 5.78 86.57 0.50 4.21 16 21 C 0.08 2.36 9.65 85.65 0.83 3.19 16 22 N -0.32 -8.92 12.50 -56.27 -0.70 -9.63 16 23 N -0.36 -8.37 3.98 -354.29 -1.41 -9.78 16 24 C 0.08 1.02 11.06 127.77 1.41 2.43 16 25 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.04 1.11 7.59 -2.38 -0.02 1.10 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.92 7.82 -2.39 -0.02 1.90 16 29 H 0.11 1.54 7.70 -2.39 -0.02 1.53 16 30 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.09 3.18 6.99 -2.39 -0.02 3.17 16 32 H 0.08 3.01 7.93 -2.39 -0.02 2.99 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.08 4.13 5.87 -2.39 -0.01 4.11 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.09 3.17 4.79 -2.39 -0.01 3.15 16 39 H 0.20 4.99 7.51 -2.91 -0.02 4.97 16 40 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.12 0.77 7.62 -2.39 -0.02 0.75 16 Total: -1.00 -70.88 338.81 3.88 -67.00 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 1.02 Total: 14.14 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 7.26 Total: 27.01 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -6.36 Total: -130.59 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.06 Total: -23.40 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.88 3.88 -67.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610397045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.567 kcal (2) G-P(sol) polarization free energy of solvation -70.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds