Wall clock time and date at job start Tue Mar 31 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35033 * 124.88778 * 2 1 4 4 C 1.35368 * 107.22714 * 179.72713 * 3 2 1 5 5 C 1.41501 * 105.50317 * 0.40861 * 4 3 2 6 6 C 1.47710 * 126.51689 * 179.84787 * 5 4 3 7 7 O 1.21572 * 119.99844 * 359.71320 * 6 5 4 8 8 N 1.34773 * 119.99918 * 179.71404 * 6 5 4 9 9 C 1.46498 * 120.00110 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47509 * 179.97438 * 9 8 6 11 11 C 1.53349 * 109.42091 * 295.12909 * 10 9 8 12 12 C 1.53193 * 109.14947 * 178.67009 * 11 10 9 13 13 N 1.46932 * 108.89365 * 54.58000 * 12 11 10 14 14 C 1.36929 * 120.62923 * 126.33970 * 13 12 11 15 15 H 1.07994 * 120.00472 * 332.28422 * 14 13 12 16 16 C 1.38823 * 119.99710 * 152.28799 * 14 13 12 17 17 N 1.31617 * 119.99601 * 342.59309 * 16 14 13 18 18 Si 1.86793 * 119.99892 * 162.59877 * 16 14 13 19 19 H 1.48502 * 109.47323 * 94.34576 * 18 16 14 20 20 H 1.48497 * 109.47157 * 214.34797 * 18 16 14 21 21 H 1.48496 * 109.47300 * 334.34614 * 18 16 14 22 22 C 1.46927 * 118.73576 * 306.31982 * 13 12 11 23 23 C 1.53038 * 109.46293 * 174.99544 * 10 9 8 24 24 N 1.28471 * 124.88000 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47315 * 269.98209 * 1 2 3 26 26 H 1.09003 * 109.46840 * 29.97927 * 1 2 3 27 27 H 1.08991 * 109.47239 * 149.97911 * 1 2 3 28 28 H 1.08003 * 126.38542 * 359.97438 * 3 2 1 29 29 H 1.07998 * 127.24535 * 180.25942 * 4 3 2 30 30 H 0.96998 * 120.00023 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47215 * 59.99635 * 9 8 6 32 32 H 1.09003 * 109.47121 * 299.99677 * 9 8 6 33 33 H 1.09005 * 109.45806 * 55.02951 * 10 9 8 34 34 H 1.08996 * 109.68615 * 58.70772 * 11 10 9 35 35 H 1.08996 * 109.47201 * 298.50878 * 11 10 9 36 36 H 1.08995 * 109.58815 * 294.71872 * 12 11 10 37 37 H 1.09000 * 109.58606 * 174.43227 * 12 11 10 38 38 H 0.97000 * 119.99465 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.58712 * 173.40018 * 22 13 12 40 40 H 1.09003 * 109.58223 * 293.67509 * 22 13 12 41 41 H 1.09002 * 109.49898 * 61.43965 * 23 10 9 42 42 H 1.09001 * 109.50239 * 301.34052 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2374 1.1076 0.0000 4 6 3.5273 0.6970 0.0062 5 6 3.4740 -0.7170 0.0001 6 6 4.6272 -1.6400 0.0002 7 8 5.7597 -1.1979 0.0006 8 7 4.4240 -2.9723 -0.0003 9 6 5.5677 -3.8878 0.0004 10 6 5.0645 -5.3327 0.0004 11 6 4.3163 -5.6120 1.3094 12 6 3.7867 -7.0494 1.2887 13 7 4.9052 -7.9647 1.0239 14 6 5.1604 -9.0157 1.8637 15 1 4.8831 -8.9540 2.9056 16 6 5.7758 -10.1604 1.3758 17 7 5.8064 -10.3897 0.0802 18 14 6.5602 -11.3753 2.5582 19 1 5.5868 -12.4486 2.8832 20 1 7.7641 -11.9732 1.9272 21 1 6.9533 -10.6698 3.8043 22 6 5.7443 -7.7311 -0.1594 23 6 6.2544 -6.2870 -0.1248 24 7 2.1997 -1.0539 0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5141 28 1 1.8906 2.1305 -0.0004 29 1 4.4109 1.3179 0.0118 30 1 3.5204 -3.3251 -0.0003 31 1 6.1718 -3.7139 0.8908 32 1 6.1731 -3.7136 -0.8892 33 1 4.3892 -5.4820 -0.8421 34 1 3.4816 -4.9183 1.4105 35 1 4.9975 -5.4874 2.1511 36 1 3.0374 -7.1514 0.5038 37 1 3.3399 -7.2881 2.2538 38 1 6.2361 -11.1897 -0.2607 39 1 6.5905 -8.4179 -0.1487 40 1 5.1552 -7.8912 -1.0624 41 1 6.9175 -6.1558 0.7303 42 1 6.7986 -6.0713 -1.0443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610492532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:37 Heat of formation + Delta-G solvation = 58.701925 kcal Electronic energy + Delta-G solvation = -22993.990717 eV Core-core repulsion = 19590.247103 eV Total energy + Delta-G solvation = -3403.743614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.83877 -39.40133 -37.69075 -34.88560 -33.74861 -32.76536 -31.06807 -30.65285 -29.67675 -28.07661 -26.55626 -24.19774 -22.87255 -22.06759 -21.69888 -20.93755 -20.01412 -19.03826 -18.02262 -16.80195 -16.54420 -16.49047 -15.65729 -15.07707 -14.78105 -14.30342 -14.03059 -13.92254 -13.54720 -13.44574 -13.31871 -13.16433 -12.96973 -12.94663 -12.30157 -12.25111 -11.80895 -11.28426 -11.14551 -10.96084 -10.67862 -10.45375 -10.24481 -10.17141 -10.10835 -9.84699 -9.51938 -9.49217 -9.39180 -9.30776 -8.86660 -8.42974 -6.63112 -5.75519 -3.16824 1.44057 1.93242 2.18546 3.28958 3.39688 3.43310 3.47041 3.49948 4.07741 4.50401 4.53123 4.63239 4.67327 4.92787 5.06852 5.20357 5.29878 5.43155 5.44558 5.47197 5.55022 5.66216 5.93191 6.00156 6.10876 6.16253 6.21777 6.38129 6.46404 6.51088 6.54747 6.65674 6.75046 6.82455 6.86974 7.03773 7.41444 7.49133 7.70377 7.76943 7.83186 8.28107 8.48984 9.25375 9.89293 10.46094 11.33100 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031896 B = 0.002861 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.642080 B = 9783.575898 C =10264.052912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.286 5.286 3 C -0.022 4.022 4 C -0.180 4.180 5 C -0.014 4.014 6 C 0.600 3.400 7 O -0.538 6.538 8 N -0.711 5.711 9 C 0.123 3.877 10 C -0.090 4.090 11 C -0.128 4.128 12 C 0.146 3.854 13 N -0.593 5.593 14 C -0.250 4.250 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.171 3.829 23 C -0.132 4.132 24 N -0.261 5.261 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.182 0.818 29 H 0.162 0.838 30 H 0.406 0.594 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.052 0.948 38 H 0.253 0.747 39 H 0.088 0.912 40 H 0.017 0.983 41 H 0.058 0.942 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.395 22.508 -1.780 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.075 5.075 3 C -0.164 4.164 4 C -0.208 4.208 5 C -0.175 4.175 6 C 0.384 3.616 7 O -0.414 6.414 8 N -0.362 5.362 9 C 0.000 4.000 10 C -0.109 4.109 11 C -0.167 4.167 12 C 0.019 3.981 13 N -0.316 5.316 14 C -0.380 4.380 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.046 3.954 23 C -0.172 4.172 24 N -0.097 5.097 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.199 0.801 29 H 0.180 0.820 30 H 0.242 0.758 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.346 21.720 -1.855 24.129 hybrid contribution 0.322 -0.037 0.533 0.623 sum -10.024 21.683 -1.322 23.924 Atomic orbital electron populations 1.22187 0.73161 1.05509 1.04549 1.45423 1.07843 1.03146 1.51070 1.22862 0.91010 0.93732 1.08843 1.21802 0.97335 0.93593 1.08024 1.22040 0.90746 0.94319 1.10364 1.16895 0.86481 0.81632 0.76591 1.90787 1.22573 1.77240 1.50772 1.45959 1.11222 1.05235 1.73745 1.21635 0.87710 0.88581 1.02093 1.21365 0.98781 0.91909 0.98839 1.22128 0.98970 0.98822 0.96771 1.20882 0.90280 0.88542 0.98393 1.44061 1.29505 1.29590 1.28399 1.19186 1.36015 0.92474 0.90345 0.91778 1.25028 1.02303 0.96710 0.95726 1.70038 1.46436 1.26982 1.11350 0.86303 0.78978 0.81143 0.80496 1.21531 1.21565 1.20453 1.20767 0.95627 0.90729 0.88320 1.22170 0.96095 0.98483 1.00454 1.73542 1.03039 1.14084 1.19060 0.89633 0.88632 0.88400 0.80095 0.82015 0.75818 0.91401 0.91571 0.91284 0.93340 0.92168 0.96619 0.92964 0.93693 0.89390 0.96462 0.92345 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.32 11.31 59.85 0.68 1.00 16 2 N -0.29 -2.47 3.70 -68.13 -0.25 -2.72 16 3 C -0.02 -0.17 11.46 -17.17 -0.20 -0.37 16 4 C -0.18 -1.96 10.81 -39.36 -0.43 -2.38 16 5 C -0.01 -0.19 7.13 -82.77 -0.59 -0.78 16 6 C 0.60 9.31 7.82 -12.39 -0.10 9.21 16 7 O -0.54 -9.86 16.93 5.30 0.09 -9.77 16 8 N -0.71 -10.21 5.27 -61.30 -0.32 -10.54 16 9 C 0.12 1.87 5.06 -4.05 -0.02 1.85 16 10 C -0.09 -1.49 2.19 -90.42 -0.20 -1.69 16 11 C -0.13 -2.21 5.27 -26.45 -0.14 -2.35 16 12 C 0.15 3.05 6.50 -3.71 -0.02 3.03 16 13 N -0.59 -14.95 3.00 -172.31 -0.52 -15.46 16 14 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 15 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 16 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 17 N -0.90 -26.42 11.19 55.49 0.62 -25.79 16 18 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.17 4.09 5.31 -3.71 -0.02 4.07 16 23 C -0.13 -2.51 5.36 -26.61 -0.14 -2.66 16 24 N -0.26 -3.13 11.67 33.42 0.39 -2.74 16 25 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.10 0.09 8.13 -51.93 -0.42 -0.33 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.18 0.64 8.06 -52.48 -0.42 0.22 16 29 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.41 5.37 7.38 -40.82 -0.30 5.07 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.73 7.16 -51.93 -0.37 0.35 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 39 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -34.20 345.75 -7.66 -41.86 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.44 Total: 1.32 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.41 Total: 1.78 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.08 Total: -57.26 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.20 -7.66 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610492532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.559 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds