Wall clock time and date at job start Tue Mar 31 2020 02:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30844 * 126.46189 * 2 1 4 4 N 1.28909 * 109.74002 * 179.97438 * 3 2 1 5 5 C 1.29839 * 109.47863 * 359.96863 * 4 3 2 6 6 N 1.34694 * 126.47138 * 180.02562 * 2 1 3 7 7 C 1.46264 * 128.84112 * 0.12561 * 6 2 1 8 8 C 1.53315 * 108.72286 * 162.88453 * 7 6 2 9 9 H 1.09005 * 109.43166 * 290.26636 * 8 7 6 10 10 C 1.50709 * 109.45062 * 170.33215 * 8 7 6 11 11 O 1.21273 * 119.99801 * 351.29718 * 10 8 7 12 12 N 1.34776 * 120.00056 * 171.29979 * 10 8 7 13 13 C 1.46497 * 119.99991 * 183.98517 * 12 10 8 14 14 C 1.46504 * 119.99880 * 3.98332 * 12 10 8 15 15 H 1.08996 * 109.47204 * 1.29824 * 14 12 10 16 16 C 1.52997 * 109.47001 * 121.30063 * 14 12 10 17 17 C 1.50704 * 109.46969 * 241.29904 * 14 12 10 18 18 H 1.08000 * 119.99897 * 354.91242 * 17 14 12 19 19 C 1.37884 * 119.99570 * 174.91182 * 17 14 12 20 20 N 1.31511 * 120.00174 * 358.55080 * 19 17 14 21 21 Si 1.86799 * 119.99625 * 178.27455 * 19 17 14 22 22 H 1.48493 * 109.47395 * 265.29926 * 21 19 17 23 23 H 1.48510 * 109.47112 * 25.29913 * 21 19 17 24 24 H 1.48496 * 109.47077 * 145.29568 * 21 19 17 25 25 C 1.53134 * 109.58851 * 50.29643 * 8 7 6 26 26 C 1.50796 * 128.52080 * 180.09267 * 5 4 3 27 27 H 1.08993 * 109.46812 * 269.99833 * 1 2 3 28 28 H 1.08991 * 109.47357 * 29.99876 * 1 2 3 29 29 H 1.08997 * 109.46800 * 149.99923 * 1 2 3 30 30 H 1.08991 * 109.59632 * 43.10374 * 7 6 2 31 31 H 1.08998 * 109.58937 * 282.64968 * 7 6 2 32 32 H 1.08998 * 109.47192 * 275.47455 * 13 12 10 33 33 H 1.08999 * 109.46956 * 35.47660 * 13 12 10 34 34 H 1.08997 * 109.46888 * 155.47747 * 13 12 10 35 35 H 1.08996 * 109.47274 * 65.32528 * 16 14 12 36 36 H 1.09002 * 109.47027 * 185.32693 * 16 14 12 37 37 H 1.09000 * 109.47101 * 305.31788 * 16 14 12 38 38 H 0.96999 * 119.99858 * 179.72182 * 20 19 17 39 39 H 1.08998 * 109.50303 * 50.52048 * 25 8 7 40 40 H 1.09002 * 109.49963 * 170.62493 * 25 8 7 41 41 H 1.09001 * 109.73149 * 44.44229 * 26 5 4 42 42 H 1.09000 * 109.77462 * 283.78402 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5192 0.6814 0.0005 5 6 3.5816 -0.6155 0.0016 6 7 2.3077 -1.0831 -0.0005 7 6 1.9368 -2.4980 -0.0036 8 6 3.1552 -3.3251 -0.4302 9 1 3.3617 -3.1486 -1.4859 10 6 2.8692 -4.7888 -0.2128 11 8 1.8682 -5.1292 0.3813 12 7 3.7258 -5.7193 -0.6785 13 6 3.4052 -7.1424 -0.5444 14 6 4.9774 -5.3074 -1.3189 15 1 5.0513 -4.2201 -1.3064 16 6 6.1612 -5.9079 -0.5579 17 6 4.9967 -5.7959 -2.7444 18 1 4.1995 -6.4260 -3.1101 19 6 6.0323 -5.4382 -3.5817 20 7 6.9881 -4.6477 -3.1447 21 14 6.0814 -6.0828 -5.3342 22 1 6.9218 -7.3058 -5.3885 23 1 4.7030 -6.4091 -5.7805 24 1 6.6582 -5.0458 -6.2270 25 6 4.3722 -2.9140 0.4033 26 6 4.8052 -1.4968 0.0044 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.1202 -2.6603 -0.7070 31 1 1.6249 -2.7962 0.9973 32 1 3.7126 -7.4928 0.4409 33 1 2.3311 -7.2856 -0.6622 34 1 3.9336 -7.7077 -1.3121 35 1 6.1395 -6.9937 -0.6504 36 1 7.0929 -5.5262 -0.9756 37 1 6.0947 -5.6314 0.4943 38 1 7.7187 -4.3994 -3.7325 39 1 4.1109 -2.9301 1.4613 40 1 5.1909 -3.6099 0.2196 41 1 5.5307 -1.1170 0.7239 42 1 5.2491 -1.5147 -0.9909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611011045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:22 Heat of formation + Delta-G solvation = 36.662838 kcal Electronic energy + Delta-G solvation = -24591.673446 eV Core-core repulsion = 21186.974145 eV Total energy + Delta-G solvation = -3404.699301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.16617 -39.84397 -36.58907 -35.88488 -33.97643 -32.78684 -31.54655 -30.33758 -29.44653 -27.25317 -26.92431 -25.45000 -24.20903 -22.97227 -21.60722 -21.17266 -19.73691 -18.27835 -17.24243 -16.76442 -16.50484 -15.96425 -15.37167 -14.92291 -14.66062 -14.49618 -13.98629 -13.83826 -13.79470 -13.34180 -13.11364 -12.84646 -12.65888 -12.42350 -12.00545 -11.92568 -11.88315 -11.50186 -11.35581 -11.20828 -11.07313 -11.02902 -10.87534 -10.81107 -10.49703 -10.29873 -10.15947 -9.95207 -9.53726 -9.23405 -8.80352 -8.67048 -7.88425 -6.33090 -4.40495 1.95545 2.54444 3.00295 3.03766 3.13341 3.22509 3.24482 3.66519 4.19975 4.26092 4.42430 4.55300 4.68218 4.76015 4.96850 5.00741 5.21607 5.25159 5.33675 5.38491 5.40865 5.64613 5.71952 5.77685 5.94253 5.96094 6.04410 6.10250 6.13925 6.16565 6.31035 6.34836 6.40547 6.50381 6.68897 6.98218 6.99739 7.16239 7.49256 7.62911 7.90740 8.19758 8.56109 8.73435 8.89572 9.28133 10.73232 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.005211 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.533822 B = 5372.450532 C = 6034.087044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.171 3.829 3 N -0.304 5.304 4 N -0.297 5.297 5 C 0.183 3.817 6 N -0.467 5.467 7 C 0.125 3.875 8 C -0.119 4.119 9 H 0.115 0.885 10 C 0.521 3.479 11 O -0.574 6.574 12 N -0.584 5.584 13 C 0.095 3.905 14 C 0.242 3.758 15 H 0.068 0.932 16 C -0.147 4.147 17 C -0.536 4.536 18 H 0.062 0.938 19 C 0.070 3.930 20 N -0.885 5.885 21 Si 0.896 3.104 22 H -0.279 1.279 23 H -0.274 1.274 24 H -0.284 1.284 25 C -0.125 4.125 26 C -0.032 4.032 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.085 0.915 37 H 0.016 0.984 38 H 0.267 0.733 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 1.823 5.635 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.097 4.097 3 N -0.145 5.145 4 N -0.136 5.136 5 C -0.084 4.084 6 N -0.157 5.157 7 C 0.002 3.998 8 C -0.141 4.141 9 H 0.133 0.867 10 C 0.307 3.693 11 O -0.456 6.456 12 N -0.313 5.313 13 C -0.048 4.048 14 C 0.142 3.858 15 H 0.085 0.915 16 C -0.206 4.206 17 C -0.575 4.575 18 H 0.080 0.920 19 C -0.133 4.133 20 N -0.523 5.523 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.199 1.199 24 H -0.210 1.210 25 C -0.163 4.163 26 C -0.071 4.071 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.477 3.151 5.856 9.283 hybrid contribution -0.196 -1.785 -1.161 2.138 sum -6.673 1.365 4.695 8.273 Atomic orbital electron populations 1.20172 0.83970 1.04362 1.03835 1.24584 0.96987 0.82968 1.05129 1.74424 0.96275 1.23829 1.20018 1.74017 1.12099 1.08195 1.19304 1.24836 0.87235 0.92432 1.03931 1.46015 1.07012 1.08590 1.54123 1.21794 0.98088 0.75162 1.04741 1.21532 0.95343 0.93257 1.03918 0.86688 1.19896 0.83141 0.87161 0.79089 1.90618 1.28729 1.82569 1.43643 1.48229 1.21528 1.05607 1.55920 1.21438 1.00665 0.81888 1.00857 1.19347 0.77903 0.97171 0.91416 0.91482 1.22095 1.02093 1.00170 0.96223 1.21308 1.08477 1.32744 0.94921 0.91958 1.24866 0.95232 0.94525 0.98714 1.69859 1.11593 1.34201 1.36600 0.86499 0.78397 0.78767 0.83949 1.20498 1.19856 1.20973 1.21945 0.98017 0.96957 0.99350 1.20259 0.90784 0.90879 1.05226 0.89784 0.88892 0.90442 0.88436 0.88106 0.93936 0.92405 0.90189 0.94341 0.89661 0.96483 0.92360 0.91113 0.87139 0.87973 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.29 36.01 0.37 -0.26 16 2 C 0.17 2.52 8.07 -155.45 -1.25 1.27 16 3 N -0.30 -5.43 12.23 32.70 0.40 -5.03 16 4 N -0.30 -5.50 12.21 32.75 0.40 -5.10 16 5 C 0.18 2.99 7.75 -155.31 -1.20 1.79 16 6 N -0.47 -6.98 3.11 -110.86 -0.35 -7.32 16 7 C 0.13 1.72 5.57 -4.01 -0.02 1.70 16 8 C -0.12 -1.84 1.69 -91.54 -0.15 -2.00 16 9 H 0.12 1.94 7.52 -51.93 -0.39 1.55 16 10 C 0.52 9.36 6.98 -10.98 -0.08 9.28 16 11 O -0.57 -11.19 15.49 5.56 0.09 -11.10 16 12 N -0.58 -10.96 2.75 -175.26 -0.48 -11.45 16 13 C 0.09 1.62 9.33 59.85 0.56 2.18 16 14 C 0.24 4.95 1.57 -69.08 -0.11 4.84 16 15 H 0.07 1.39 4.25 -51.93 -0.22 1.17 16 16 C -0.15 -2.91 8.44 37.16 0.31 -2.60 16 17 C -0.54 -12.53 8.00 -34.44 -0.28 -12.80 16 18 H 0.06 1.49 7.34 -52.49 -0.39 1.11 16 19 C 0.07 1.69 5.32 -17.82 -0.09 1.59 16 20 N -0.89 -21.75 11.81 55.43 0.65 -21.09 16 21 Si 0.90 19.24 29.54 -169.99 -5.02 14.21 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.12 -1.79 4.67 -26.42 -0.12 -1.91 16 26 C -0.03 -0.45 6.34 -27.60 -0.17 -0.63 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 30 H 0.10 1.23 7.84 -51.93 -0.41 0.82 16 31 H 0.10 1.37 7.66 -51.93 -0.40 0.97 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.97 7.65 -51.93 -0.40 0.57 16 34 H 0.08 1.38 7.12 -51.93 -0.37 1.01 16 35 H 0.04 0.75 7.82 -51.93 -0.41 0.34 16 36 H 0.08 1.85 6.67 -51.93 -0.35 1.51 16 37 H 0.02 0.29 7.79 -51.93 -0.40 -0.11 16 38 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 39 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.11 1.71 4.80 -51.93 -0.25 1.46 16 41 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -28.61 333.83 -7.57 -36.18 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.05 Total: 3.21 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.25 Total: 2.46 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.63 Total: -49.99 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.61 -7.57 -36.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611011045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.842 kcal (2) G-P(sol) polarization free energy of solvation -28.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds