Wall clock time and date at job start Tue Mar 31 2020 02:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30844 * 126.46189 * 2 1 4 4 N 1.28909 * 109.74002 * 179.97438 * 3 2 1 5 5 C 1.29839 * 109.47863 * 359.96863 * 4 3 2 6 6 N 1.34694 * 126.47138 * 180.02562 * 2 1 3 7 7 C 1.46264 * 128.84112 * 0.12561 * 6 2 1 8 8 C 1.53315 * 108.72286 * 162.88453 * 7 6 2 9 9 H 1.09005 * 109.43166 * 290.26636 * 8 7 6 10 10 C 1.50709 * 109.45062 * 170.33215 * 8 7 6 11 11 O 1.21273 * 119.99801 * 351.29718 * 10 8 7 12 12 N 1.34776 * 120.00056 * 171.29979 * 10 8 7 13 13 C 1.46497 * 119.99991 * 183.98517 * 12 10 8 14 14 C 1.46504 * 119.99880 * 3.98332 * 12 10 8 15 15 H 1.08996 * 109.47204 * 1.29824 * 14 12 10 16 16 C 1.52997 * 109.47001 * 121.30063 * 14 12 10 17 17 C 1.50704 * 109.46969 * 241.29904 * 14 12 10 18 18 H 1.08000 * 119.99897 * 354.91242 * 17 14 12 19 19 C 1.37884 * 119.99570 * 174.91182 * 17 14 12 20 20 N 1.31511 * 120.00174 * 358.55080 * 19 17 14 21 21 Si 1.86799 * 119.99625 * 178.27455 * 19 17 14 22 22 H 1.48493 * 109.47395 * 265.29926 * 21 19 17 23 23 H 1.48510 * 109.47112 * 25.29913 * 21 19 17 24 24 H 1.48496 * 109.47077 * 145.29568 * 21 19 17 25 25 C 1.53134 * 109.58851 * 50.29643 * 8 7 6 26 26 C 1.50796 * 128.52080 * 180.09267 * 5 4 3 27 27 H 1.08993 * 109.46812 * 269.99833 * 1 2 3 28 28 H 1.08991 * 109.47357 * 29.99876 * 1 2 3 29 29 H 1.08997 * 109.46800 * 149.99923 * 1 2 3 30 30 H 1.08991 * 109.59632 * 43.10374 * 7 6 2 31 31 H 1.08998 * 109.58937 * 282.64968 * 7 6 2 32 32 H 1.08998 * 109.47192 * 275.47455 * 13 12 10 33 33 H 1.08999 * 109.46956 * 35.47660 * 13 12 10 34 34 H 1.08997 * 109.46888 * 155.47747 * 13 12 10 35 35 H 1.08996 * 109.47274 * 65.32528 * 16 14 12 36 36 H 1.09002 * 109.47027 * 185.32693 * 16 14 12 37 37 H 1.09000 * 109.47101 * 305.31788 * 16 14 12 38 38 H 0.96999 * 119.99858 * 179.72182 * 20 19 17 39 39 H 1.08998 * 109.50303 * 50.52048 * 25 8 7 40 40 H 1.09002 * 109.49963 * 170.62493 * 25 8 7 41 41 H 1.09001 * 109.73149 * 44.44229 * 26 5 4 42 42 H 1.09000 * 109.77462 * 283.78402 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5192 0.6814 0.0005 5 6 3.5816 -0.6155 0.0016 6 7 2.3077 -1.0831 -0.0005 7 6 1.9368 -2.4980 -0.0036 8 6 3.1552 -3.3251 -0.4302 9 1 3.3617 -3.1486 -1.4859 10 6 2.8692 -4.7888 -0.2128 11 8 1.8682 -5.1292 0.3813 12 7 3.7258 -5.7193 -0.6785 13 6 3.4052 -7.1424 -0.5444 14 6 4.9774 -5.3074 -1.3189 15 1 5.0513 -4.2201 -1.3064 16 6 6.1612 -5.9079 -0.5579 17 6 4.9967 -5.7959 -2.7444 18 1 4.1995 -6.4260 -3.1101 19 6 6.0323 -5.4382 -3.5817 20 7 6.9881 -4.6477 -3.1447 21 14 6.0814 -6.0828 -5.3342 22 1 6.9218 -7.3058 -5.3885 23 1 4.7030 -6.4091 -5.7805 24 1 6.6582 -5.0458 -6.2270 25 6 4.3722 -2.9140 0.4033 26 6 4.8052 -1.4968 0.0044 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.1202 -2.6603 -0.7070 31 1 1.6249 -2.7962 0.9973 32 1 3.7126 -7.4928 0.4409 33 1 2.3311 -7.2856 -0.6622 34 1 3.9336 -7.7077 -1.3121 35 1 6.1395 -6.9937 -0.6504 36 1 7.0929 -5.5262 -0.9756 37 1 6.0947 -5.6314 0.4943 38 1 7.7187 -4.3994 -3.7325 39 1 4.1109 -2.9301 1.4613 40 1 5.1909 -3.6099 0.2196 41 1 5.5307 -1.1170 0.7239 42 1 5.2491 -1.5147 -0.9909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611011045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:22 Heat of formation + Delta-G solvation = 21.879117 kcal Electronic energy + Delta-G solvation = -24592.314516 eV Core-core repulsion = 21186.974145 eV Total energy + Delta-G solvation = -3405.340371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.37103 -41.25944 -37.85597 -37.43895 -35.13348 -34.52268 -32.70428 -31.44189 -31.07091 -28.33291 -28.26315 -27.22561 -25.44916 -24.23244 -23.15907 -22.33682 -20.98499 -19.68810 -18.63344 -18.42396 -17.67232 -17.26139 -16.95302 -16.31995 -16.11251 -15.84924 -15.21380 -15.07982 -14.89746 -14.73451 -14.41603 -13.93845 -13.80606 -13.54799 -13.44155 -13.21334 -13.20525 -12.99828 -12.86046 -12.74126 -12.60647 -12.48774 -12.22957 -12.21870 -12.02785 -11.93860 -11.39016 -11.20894 -11.10864 -10.74536 -10.46314 -10.01393 -9.41751 -8.15471 -6.26460 0.79802 1.38289 1.41694 1.47306 1.52719 1.62881 1.76259 2.26354 2.45528 3.10126 3.16200 3.29233 3.34415 3.56563 3.58460 3.91773 4.03758 4.14124 4.21786 4.31071 4.55582 4.58990 4.63077 4.66746 4.69315 4.73677 4.83157 4.88071 4.94027 4.98069 4.98699 5.01203 5.03407 5.07180 5.22604 5.41816 5.55687 5.73242 5.87597 5.95018 6.18521 6.62370 6.83524 7.21350 7.45002 7.66622 8.88839 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.005211 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.533822 B = 5372.450532 C = 6034.087044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.180 3.820 3 N -0.344 5.344 4 N -0.331 5.331 5 C 0.177 3.823 6 N -0.468 5.468 7 C 0.132 3.868 8 C -0.114 4.114 9 H 0.100 0.900 10 C 0.522 3.478 11 O -0.586 6.586 12 N -0.590 5.590 13 C 0.094 3.906 14 C 0.248 3.752 15 H 0.065 0.935 16 C -0.137 4.137 17 C -0.543 4.543 18 H 0.052 0.948 19 C 0.034 3.966 20 N -0.903 5.903 21 Si 0.943 3.057 22 H -0.277 1.277 23 H -0.276 1.276 24 H -0.287 1.287 25 C -0.115 4.115 26 C -0.025 4.025 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.265 0.735 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 1.381 6.169 9.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 N -0.184 5.184 4 N -0.170 5.170 5 C -0.092 4.092 6 N -0.159 5.159 7 C 0.010 3.990 8 C -0.135 4.135 9 H 0.118 0.882 10 C 0.309 3.691 11 O -0.469 6.469 12 N -0.319 5.319 13 C -0.049 4.049 14 C 0.146 3.854 15 H 0.083 0.917 16 C -0.195 4.195 17 C -0.582 4.582 18 H 0.071 0.929 19 C -0.168 4.168 20 N -0.541 5.541 21 Si 0.770 3.230 22 H -0.203 1.203 23 H -0.201 1.201 24 H -0.213 1.213 25 C -0.153 4.153 26 C -0.065 4.065 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.137 0.863 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.641 2.705 6.393 10.324 hybrid contribution 0.104 -1.678 -1.318 2.136 sum -7.537 1.028 5.075 9.144 Atomic orbital electron populations 1.20448 0.80470 1.05834 1.05585 1.25473 0.98738 0.82071 1.02497 1.74350 0.96481 1.25397 1.22173 1.73927 1.12967 1.09432 1.20672 1.25107 0.88282 0.92196 1.03642 1.46122 1.06673 1.09047 1.54068 1.21805 0.97474 0.74174 1.05545 1.21450 0.96745 0.92066 1.03270 0.88205 1.20174 0.82593 0.87848 0.78470 1.90610 1.29080 1.82993 1.44216 1.48239 1.21234 1.06487 1.55978 1.21499 1.00774 0.81095 1.01534 1.19161 0.78908 0.96981 0.90302 0.91701 1.21928 1.00638 0.99777 0.97174 1.21542 1.07920 1.32226 0.96490 0.92926 1.25376 0.95301 0.94936 1.01143 1.69932 1.11925 1.35011 1.37259 0.85773 0.78000 0.78137 0.81077 1.20328 1.20066 1.21296 1.21848 0.97089 0.96580 0.99808 1.20257 0.90490 0.90486 1.05243 0.87744 0.87815 0.88549 0.86948 0.87294 0.92470 0.92155 0.90673 0.94536 0.91735 0.94448 0.92531 0.89844 0.88202 0.86251 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.29 71.24 0.73 -0.34 16 2 C 0.18 5.02 8.07 138.14 1.11 6.14 16 3 N -0.34 -12.08 12.23 -50.46 -0.62 -12.70 16 4 N -0.33 -12.24 12.21 -50.28 -0.61 -12.85 16 5 C 0.18 5.63 7.75 138.14 1.07 6.70 16 6 N -0.47 -13.27 3.11 -504.67 -1.57 -14.84 16 7 C 0.13 3.36 5.57 86.53 0.48 3.84 16 8 C -0.11 -3.37 1.69 -11.39 -0.02 -3.39 16 9 H 0.10 3.30 7.52 -2.38 -0.02 3.29 16 10 C 0.52 17.88 6.98 87.66 0.61 18.49 16 11 O -0.59 -21.60 15.49 -3.01 -0.05 -21.65 16 12 N -0.59 -21.40 2.75 -826.80 -2.28 -23.68 16 13 C 0.09 3.07 9.33 127.77 1.19 4.27 16 14 C 0.25 9.95 1.57 44.24 0.07 10.02 16 15 H 0.07 2.67 4.25 -2.39 -0.01 2.66 16 16 C -0.14 -5.27 8.44 71.98 0.61 -4.66 16 17 C -0.54 -25.15 8.00 25.60 0.20 -24.94 16 18 H 0.05 2.50 7.34 -2.91 -0.02 2.47 16 19 C 0.03 1.62 5.32 84.66 0.45 2.07 16 20 N -0.90 -44.29 11.81 21.45 0.25 -44.04 16 21 Si 0.94 39.19 29.54 68.60 2.03 41.21 16 22 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 25 C -0.12 -3.14 4.67 30.79 0.14 -3.00 16 26 C -0.03 -0.70 6.34 30.03 0.19 -0.51 16 27 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.10 1.26 7.75 -2.39 -0.02 1.24 16 30 H 0.11 2.53 7.84 -2.39 -0.02 2.51 16 31 H 0.11 2.65 7.66 -2.39 -0.02 2.63 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.93 7.65 -2.39 -0.02 1.91 16 34 H 0.07 2.51 7.12 -2.39 -0.02 2.50 16 35 H 0.04 1.38 7.82 -2.39 -0.02 1.36 16 36 H 0.06 2.78 6.67 -2.39 -0.02 2.76 16 37 H 0.04 1.25 7.79 -2.39 -0.02 1.24 16 38 H 0.27 12.66 8.31 -92.71 -0.77 11.89 16 39 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 40 H 0.10 2.98 4.80 -2.39 -0.01 2.97 16 41 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.10 2.83 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -59.97 333.83 5.03 -54.93 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 1.03 Total: 18.92 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.85 Total: 14.68 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -4.82 Total: -108.10 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.21 kcal Total: -59.97 5.03 -54.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611011045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.813 kcal (2) G-P(sol) polarization free energy of solvation -59.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds