Wall clock time and date at job start Tue Mar 31 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.46853 * 2 1 4 4 C 1.35597 * 116.99641 * 180.02562 * 3 2 1 5 5 N 1.31155 * 120.46580 * 359.72220 * 4 3 2 6 6 C 1.33652 * 121.14311 * 179.69541 * 5 4 3 7 7 C 1.34514 * 122.11929 * 0.62115 * 6 5 4 8 8 N 1.36993 * 120.83187 * 359.66822 * 7 6 5 9 9 H 0.96997 * 120.63541 * 180.02562 * 8 7 6 10 10 C 1.37661 * 118.73755 * 0.02870 * 8 7 6 11 11 N 1.31309 * 120.95249 * 179.97438 * 10 8 7 12 12 C 1.46492 * 120.00203 * 353.89163 * 11 10 8 13 13 C 1.53043 * 109.46202 * 245.28129 * 12 11 10 14 14 C 1.53197 * 109.31529 * 178.61168 * 13 12 11 15 15 N 1.46920 * 108.77154 * 54.63874 * 14 13 12 16 16 C 1.36933 * 120.63120 * 126.37288 * 15 14 13 17 17 H 1.08002 * 119.99968 * 329.12865 * 16 15 14 18 18 C 1.38813 * 120.00431 * 149.12646 * 16 15 14 19 19 N 1.31621 * 120.00051 * 348.69196 * 18 16 15 20 20 Si 1.86799 * 120.00325 * 168.69140 * 18 16 15 21 21 H 1.48494 * 109.47145 * 59.99826 * 20 18 16 22 22 H 1.48503 * 109.47393 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46884 * 300.00302 * 20 18 16 24 24 C 1.46932 * 118.73983 * 306.38595 * 15 14 13 25 25 C 1.53046 * 109.46440 * 125.21734 * 12 11 10 26 26 H 1.09001 * 109.47249 * 300.00059 * 1 2 3 27 27 H 1.08999 * 109.47162 * 60.00390 * 1 2 3 28 28 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47249 * 239.99941 * 2 1 3 30 30 H 1.08999 * 109.47162 * 119.99610 * 2 1 3 31 31 H 1.08001 * 118.93704 * 180.30951 * 6 5 4 32 32 H 1.07997 * 119.58719 * 179.69908 * 7 6 5 33 33 H 1.09001 * 109.46353 * 5.24193 * 12 11 10 34 34 H 1.08995 * 109.49931 * 298.56827 * 13 12 11 35 35 H 1.09005 * 109.49321 * 58.66270 * 13 12 11 36 36 H 1.09000 * 109.58468 * 294.84996 * 14 13 12 37 37 H 1.09002 * 109.70449 * 174.49617 * 14 13 12 38 38 H 0.96996 * 120.00506 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.59093 * 293.82932 * 24 15 14 40 40 H 1.09003 * 109.69998 * 173.46663 * 24 15 14 41 41 H 1.09004 * 109.49156 * 301.33798 * 25 12 11 42 42 H 1.09003 * 109.49816 * 61.39744 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3505 1.5249 -0.0005 5 7 4.1579 0.4913 0.0044 6 6 5.4848 0.6507 -0.0021 7 6 6.0591 1.8671 -0.0017 8 7 5.2950 3.0042 -0.0012 9 1 5.7121 3.8799 -0.0013 10 6 3.9240 2.8804 -0.0006 11 7 3.1501 3.9412 0.0003 12 6 3.7375 5.2763 0.1357 13 6 3.2796 5.9035 1.4545 14 6 3.9232 7.2851 1.6090 15 7 3.6112 8.0878 0.4186 16 6 3.0362 9.3244 0.5422 17 1 2.3724 9.5312 1.3687 18 6 3.3064 10.3123 -0.3948 19 7 4.2761 10.1430 -1.2687 20 14 2.2940 11.8820 -0.4157 21 1 2.4322 12.5776 0.8889 22 1 2.7781 12.7690 -1.5039 23 1 0.8661 11.5470 -0.6491 24 6 3.9275 7.5384 -0.9068 25 6 3.2838 6.1540 -1.0331 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 6.1164 -0.2254 -0.0028 32 1 7.1360 1.9484 -0.0022 33 1 4.8247 5.1972 0.1297 34 1 2.1945 6.0060 1.4512 35 1 3.5828 5.2660 2.2851 36 1 5.0037 7.1763 1.7035 37 1 3.5266 7.7782 2.4965 38 1 4.4647 10.8331 -1.9237 39 1 5.0083 7.4503 -1.0175 40 1 3.5333 8.1966 -1.6811 41 1 3.5900 5.6948 -1.9731 42 1 2.1985 6.2537 -1.0134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611582657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:49 Heat of formation + Delta-G solvation = 52.757700 kcal Electronic energy + Delta-G solvation = -23458.615243 eV Core-core repulsion = 20054.613868 eV Total energy + Delta-G solvation = -3404.001375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84817 -38.68281 -37.69050 -35.45098 -33.66125 -32.52660 -31.47216 -30.28965 -29.70302 -28.42780 -25.75961 -24.47188 -22.98279 -22.81461 -22.08431 -21.04439 -19.54039 -18.98084 -17.81122 -17.23802 -16.67061 -16.37784 -15.43889 -14.84580 -14.66392 -14.57058 -14.49543 -13.90884 -13.52110 -13.18682 -13.10257 -12.97548 -12.75599 -12.74682 -12.42646 -11.63914 -11.58284 -11.46979 -11.22863 -11.00975 -10.99059 -10.72299 -10.40684 -10.29432 -10.14070 -9.96326 -9.87185 -9.56280 -9.36938 -9.10074 -8.47807 -7.16052 -6.63752 -5.78343 -3.25571 0.86586 1.82860 2.33934 3.25037 3.39287 3.44210 3.45971 3.57089 4.11778 4.33085 4.49572 4.81342 4.89684 4.95407 5.01441 5.24342 5.26731 5.40964 5.43086 5.52373 5.63767 5.66645 5.71878 5.78001 5.85287 5.97204 6.12803 6.30550 6.48874 6.54191 6.59032 6.64273 6.73059 6.79920 6.92645 6.99468 7.17769 7.38289 7.65725 7.78885 7.80378 8.13929 8.47649 9.22239 9.83747 10.41714 11.30056 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023779 B = 0.003491 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.211240 B = 8018.049501 C = 8704.626576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.277 6.277 4 C 0.359 3.641 5 N -0.509 5.509 6 C -0.035 4.035 7 C 0.053 3.947 8 N -0.634 5.634 9 H 0.424 0.576 10 C 0.352 3.648 11 N -0.529 5.529 12 C 0.088 3.912 13 C -0.117 4.117 14 C 0.147 3.853 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.004 3.996 19 N -0.907 5.907 20 Si 0.906 3.094 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.173 3.827 25 C -0.125 4.125 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.014 0.986 37 H 0.058 0.942 38 H 0.254 0.746 39 H 0.015 0.985 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 -20.606 2.084 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.179 6.179 4 C 0.146 3.854 5 N -0.241 5.241 6 C -0.172 4.172 7 C -0.073 4.073 8 N -0.263 5.263 9 H 0.265 0.735 10 C 0.076 3.924 11 N -0.256 5.256 12 C -0.022 4.022 13 C -0.157 4.157 14 C 0.020 3.980 15 N -0.314 5.314 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.195 4.195 19 N -0.552 5.552 20 Si 0.736 3.264 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.047 3.953 25 C -0.165 4.165 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.111 0.889 41 H 0.063 0.937 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.252 -20.837 1.910 20.926 hybrid contribution 1.174 1.750 -0.071 2.108 sum 1.426 -19.087 1.839 19.229 Atomic orbital electron populations 1.21814 0.92840 1.02653 1.03751 1.22684 0.94919 0.80909 1.02456 1.86302 1.15233 1.30196 1.86141 1.20768 0.84948 0.85887 0.93819 1.67610 1.05681 1.31275 1.19550 1.20986 0.89344 0.95906 1.10941 1.22337 0.97939 0.86786 1.00262 1.42830 1.05269 1.09621 1.68619 0.73456 1.20853 0.80220 0.93511 0.97820 1.73382 1.32197 0.98333 1.21653 1.21520 0.94959 0.87498 0.98242 1.22070 1.02184 0.97573 0.93886 1.20911 0.95779 0.89825 0.91449 1.44007 1.71583 1.16240 0.99585 1.19159 1.20288 0.87560 1.11208 0.91784 1.25144 0.97007 0.97595 0.99739 1.69960 1.29818 1.34375 1.21011 0.86318 0.79924 0.82953 0.77238 1.20855 1.21607 1.20906 1.20806 0.95645 0.89591 0.89248 1.22246 1.02164 0.97649 0.94415 0.91455 0.91435 0.90387 0.91549 0.91544 0.82177 0.82230 0.95440 0.91155 0.93677 0.96811 0.92373 0.93561 0.96740 0.88948 0.93750 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.90 16 2 C 0.07 0.69 6.06 37.16 0.23 0.91 16 3 O -0.28 -4.02 10.02 -18.49 -0.19 -4.21 16 4 C 0.36 5.28 7.77 -14.21 -0.11 5.17 16 5 N -0.51 -6.58 9.35 -11.79 -0.11 -6.69 16 6 C -0.03 -0.36 11.00 -18.08 -0.20 -0.56 16 7 C 0.05 0.50 11.18 -16.56 -0.19 0.32 16 8 N -0.63 -7.81 5.37 -10.55 -0.06 -7.86 16 9 H 0.42 4.96 6.36 -40.82 -0.26 4.70 16 10 C 0.35 5.45 7.66 -153.94 -1.18 4.27 16 11 N -0.53 -9.51 10.07 -52.06 -0.52 -10.04 16 12 C 0.09 1.63 2.76 -67.89 -0.19 1.44 16 13 C -0.12 -2.24 5.68 -26.61 -0.15 -2.39 16 14 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 15 N -0.59 -15.11 2.99 -172.32 -0.51 -15.62 16 16 C -0.25 -7.03 9.58 -15.06 -0.14 -7.17 16 17 H 0.06 1.75 7.85 -52.49 -0.41 1.34 16 18 C 0.00 0.10 5.04 -17.43 -0.09 0.01 16 19 N -0.91 -26.37 11.05 55.49 0.61 -25.76 16 20 Si 0.91 21.87 29.57 -169.99 -5.03 16.85 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.17 4.22 5.26 -3.71 -0.02 4.20 16 25 C -0.12 -2.60 5.68 -26.61 -0.15 -2.75 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.03 0.48 5.48 -51.93 -0.28 0.19 16 34 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 2.52 6.09 -51.93 -0.32 2.20 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -32.23 341.88 -8.80 -41.03 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.31 Total: 1.45 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -1.83 Total: 5.70 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.59 Total: -65.97 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.19 Total: -4.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.23 -8.80 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611582657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.783 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds