Wall clock time and date at job start Tue Mar 31 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.46853 * 2 1 4 4 C 1.35597 * 116.99641 * 180.02562 * 3 2 1 5 5 N 1.31155 * 120.46580 * 359.72220 * 4 3 2 6 6 C 1.33652 * 121.14311 * 179.69541 * 5 4 3 7 7 C 1.34514 * 122.11929 * 0.62115 * 6 5 4 8 8 N 1.36993 * 120.83187 * 359.66822 * 7 6 5 9 9 H 0.96997 * 120.63541 * 180.02562 * 8 7 6 10 10 C 1.37661 * 118.73755 * 0.02870 * 8 7 6 11 11 N 1.31309 * 120.95249 * 179.97438 * 10 8 7 12 12 C 1.46492 * 120.00203 * 353.89163 * 11 10 8 13 13 C 1.53043 * 109.46202 * 245.28129 * 12 11 10 14 14 C 1.53197 * 109.31529 * 178.61168 * 13 12 11 15 15 N 1.46920 * 108.77154 * 54.63874 * 14 13 12 16 16 C 1.36933 * 120.63120 * 126.37288 * 15 14 13 17 17 H 1.08002 * 119.99968 * 329.12865 * 16 15 14 18 18 C 1.38813 * 120.00431 * 149.12646 * 16 15 14 19 19 N 1.31621 * 120.00051 * 348.69196 * 18 16 15 20 20 Si 1.86799 * 120.00325 * 168.69140 * 18 16 15 21 21 H 1.48494 * 109.47145 * 59.99826 * 20 18 16 22 22 H 1.48503 * 109.47393 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46884 * 300.00302 * 20 18 16 24 24 C 1.46932 * 118.73983 * 306.38595 * 15 14 13 25 25 C 1.53046 * 109.46440 * 125.21734 * 12 11 10 26 26 H 1.09001 * 109.47249 * 300.00059 * 1 2 3 27 27 H 1.08999 * 109.47162 * 60.00390 * 1 2 3 28 28 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47249 * 239.99941 * 2 1 3 30 30 H 1.08999 * 109.47162 * 119.99610 * 2 1 3 31 31 H 1.08001 * 118.93704 * 180.30951 * 6 5 4 32 32 H 1.07997 * 119.58719 * 179.69908 * 7 6 5 33 33 H 1.09001 * 109.46353 * 5.24193 * 12 11 10 34 34 H 1.08995 * 109.49931 * 298.56827 * 13 12 11 35 35 H 1.09005 * 109.49321 * 58.66270 * 13 12 11 36 36 H 1.09000 * 109.58468 * 294.84996 * 14 13 12 37 37 H 1.09002 * 109.70449 * 174.49617 * 14 13 12 38 38 H 0.96996 * 120.00506 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.59093 * 293.82932 * 24 15 14 40 40 H 1.09003 * 109.69998 * 173.46663 * 24 15 14 41 41 H 1.09004 * 109.49156 * 301.33798 * 25 12 11 42 42 H 1.09003 * 109.49816 * 61.39744 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3505 1.5249 -0.0005 5 7 4.1579 0.4913 0.0044 6 6 5.4848 0.6507 -0.0021 7 6 6.0591 1.8671 -0.0017 8 7 5.2950 3.0042 -0.0012 9 1 5.7121 3.8799 -0.0013 10 6 3.9240 2.8804 -0.0006 11 7 3.1501 3.9412 0.0003 12 6 3.7375 5.2763 0.1357 13 6 3.2796 5.9035 1.4545 14 6 3.9232 7.2851 1.6090 15 7 3.6112 8.0878 0.4186 16 6 3.0362 9.3244 0.5422 17 1 2.3724 9.5312 1.3687 18 6 3.3064 10.3123 -0.3948 19 7 4.2761 10.1430 -1.2687 20 14 2.2940 11.8820 -0.4157 21 1 2.4322 12.5776 0.8889 22 1 2.7781 12.7690 -1.5039 23 1 0.8661 11.5470 -0.6491 24 6 3.9275 7.5384 -0.9068 25 6 3.2838 6.1540 -1.0331 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 6.1164 -0.2254 -0.0028 32 1 7.1360 1.9484 -0.0022 33 1 4.8247 5.1972 0.1297 34 1 2.1945 6.0060 1.4512 35 1 3.5828 5.2660 2.2851 36 1 5.0037 7.1763 1.7035 37 1 3.5266 7.7782 2.4965 38 1 4.4647 10.8331 -1.9237 39 1 5.0083 7.4503 -1.0175 40 1 3.5333 8.1966 -1.6811 41 1 3.5900 5.6948 -1.9731 42 1 2.1985 6.2537 -1.0134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611582657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:49 Heat of formation + Delta-G solvation = 29.909644 kcal Electronic energy + Delta-G solvation = -23459.606009 eV Core-core repulsion = 20054.613868 eV Total energy + Delta-G solvation = -3404.992141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85795 -39.77236 -39.16043 -36.79999 -34.98779 -33.99895 -32.57833 -31.84035 -31.39071 -29.57032 -27.29157 -25.85107 -24.21333 -23.82615 -23.71902 -22.55137 -20.84952 -20.25816 -18.98265 -18.51379 -18.30635 -17.28919 -16.91462 -16.50136 -15.79266 -15.64701 -15.47630 -15.37147 -15.28927 -14.86624 -14.52218 -14.16556 -14.02167 -13.76743 -13.36797 -13.23239 -12.96209 -12.88505 -12.63105 -12.58195 -12.41245 -12.25991 -12.09965 -11.97004 -11.83408 -11.45995 -11.43775 -10.92384 -10.72119 -10.54263 -10.29753 -8.68074 -8.17209 -7.89232 -5.39829 -0.10328 0.77066 1.38034 1.45905 1.48804 1.55202 2.29353 2.49439 2.60334 3.01759 3.27667 3.49814 3.62444 3.78080 4.03100 4.09328 4.12752 4.14993 4.22257 4.28726 4.44931 4.50688 4.57011 4.61830 4.78620 4.83527 4.91847 4.98184 5.00304 5.03389 5.10653 5.12990 5.27977 5.30751 5.46914 5.59785 5.61388 5.70381 5.94391 6.24615 6.38675 6.82464 7.02494 7.12940 7.81517 8.34742 9.16813 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023779 B = 0.003491 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.211240 B = 8018.049501 C = 8704.626576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.303 6.303 4 C 0.321 3.679 5 N -0.498 5.498 6 C -0.051 4.051 7 C 0.069 3.931 8 N -0.626 5.626 9 H 0.428 0.572 10 C 0.359 3.641 11 N -0.577 5.577 12 C 0.100 3.900 13 C -0.105 4.105 14 C 0.146 3.854 15 N -0.610 5.610 16 C -0.268 4.268 17 H 0.064 0.936 18 C -0.047 4.047 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.184 3.816 25 C -0.111 4.111 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.197 0.803 32 H 0.211 0.789 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.023 0.977 37 H 0.058 0.942 38 H 0.251 0.749 39 H 0.004 0.996 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.800 -22.616 2.728 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.205 6.205 4 C 0.109 3.891 5 N -0.230 5.230 6 C -0.188 4.188 7 C -0.057 4.057 8 N -0.254 5.254 9 H 0.270 0.730 10 C 0.084 3.916 11 N -0.307 5.307 12 C -0.011 4.011 13 C -0.144 4.144 14 C 0.020 3.980 15 N -0.334 5.334 16 C -0.399 4.399 17 H 0.082 0.918 18 C -0.243 4.243 19 N -0.581 5.581 20 Si 0.798 3.202 21 H -0.199 1.199 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.057 3.943 25 C -0.150 4.150 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.214 0.786 32 H 0.227 0.773 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.022 0.978 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.573 -22.888 2.576 23.086 hybrid contribution 0.946 2.155 -0.256 2.367 sum 2.519 -20.733 2.320 21.014 Atomic orbital electron populations 1.21841 0.91507 1.04227 1.03023 1.22886 0.95969 0.79623 1.02719 1.86265 1.15491 1.32161 1.86614 1.20769 0.85391 0.85751 0.97165 1.67654 1.07006 1.30852 1.17481 1.21725 0.88647 0.97767 1.10653 1.23135 0.99927 0.85325 0.97308 1.43029 1.04596 1.11017 1.66742 0.73020 1.21123 0.81303 0.93514 0.95619 1.73365 1.32731 0.97966 1.26628 1.21202 0.95557 0.88086 0.96211 1.21879 1.00622 0.96454 0.95481 1.21030 0.96401 0.90563 0.89969 1.44252 1.71867 1.16252 1.01035 1.19481 1.20459 0.88654 1.11267 0.91824 1.25893 0.98147 1.00641 0.99569 1.70115 1.31229 1.35140 1.21573 0.85306 0.78333 0.79241 0.77332 1.19886 1.21708 1.20597 1.20552 0.94874 0.90710 0.88119 1.21984 1.00337 0.96299 0.96429 0.92099 0.92192 0.87608 0.91243 0.91123 0.78636 0.77281 0.94040 0.93140 0.91476 0.95944 0.92341 0.93971 0.97790 0.92485 0.92842 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.28 71.98 0.74 -1.66 16 2 C 0.06 1.28 6.06 71.98 0.44 1.71 16 3 O -0.30 -8.79 10.02 -89.07 -0.89 -9.69 16 4 C 0.32 9.13 7.77 87.15 0.68 9.80 16 5 N -0.50 -11.72 9.35 -304.66 -2.85 -14.57 16 6 C -0.05 -0.84 11.00 83.56 0.92 0.08 16 7 C 0.07 0.99 11.18 83.03 0.93 1.92 16 8 N -0.63 -13.61 5.37 -187.29 -1.01 -14.62 16 9 H 0.43 8.77 6.36 -92.71 -0.59 8.18 16 10 C 0.36 10.68 7.66 135.97 1.04 11.72 16 11 N -0.58 -20.67 10.07 -318.62 -3.21 -23.88 16 12 C 0.10 3.68 2.76 45.02 0.12 3.80 16 13 C -0.10 -3.97 5.68 30.67 0.17 -3.80 16 14 C 0.15 6.29 6.52 86.37 0.56 6.85 16 15 N -0.61 -31.84 2.99 -699.09 -2.09 -33.93 16 16 C -0.27 -15.23 9.58 84.03 0.81 -14.43 16 17 H 0.06 3.53 7.85 -2.91 -0.02 3.51 16 18 C -0.05 -2.67 5.04 84.86 0.43 -2.24 16 19 N -0.93 -55.69 11.05 21.65 0.24 -55.45 16 20 Si 0.97 45.62 29.57 68.60 2.03 47.65 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 C 0.18 9.23 5.26 86.36 0.45 9.68 16 25 C -0.11 -4.71 5.68 30.67 0.17 -4.54 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.32 8.12 -2.39 -0.02 1.31 16 30 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 31 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 33 H 0.04 1.38 5.48 -2.39 -0.01 1.36 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 38 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.06 3.25 6.09 -2.39 -0.01 3.23 16 41 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -72.09 341.88 0.12 -71.97 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.43 Total: 13.62 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 7.47 Total: 18.90 kcal Atomic # 7 Polarization: -133.54 SS G_CDS: -8.91 Total: -142.45 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.89 Total: -9.69 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -72.09 0.12 -71.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611582657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.879 kcal (2) G-P(sol) polarization free energy of solvation -72.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds