Wall clock time and date at job start Tue Mar 31 2020 03:03:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.47128 * 2 1
4 4 H 1.09007 * 109.47427 * 54.99507 * 3 2 1
5 5 C 1.50701 * 109.47419 * 174.99846 * 3 2 1
6 6 H 1.08002 * 119.99761 * 119.99343 * 5 3 2
7 7 C 1.37871 * 119.99694 * 300.27906 * 5 3 2
8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3
9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3
10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5
11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5
12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5
13 13 N 1.46499 * 109.47185 * 295.00236 * 3 2 1
14 14 C 1.34771 * 120.00694 * 84.99510 * 13 3 2
15 15 O 1.21290 * 119.99507 * 0.02562 * 14 13 3
16 16 C 1.50703 * 120.00516 * 180.02562 * 14 13 3
17 17 H 1.09001 * 109.44965 * 299.95950 * 16 14 13
18 18 C 1.53138 * 109.44958 * 59.89504 * 16 14 13
19 19 C 1.53457 * 109.30491 * 189.46584 * 18 16 14
20 20 C 1.50801 * 108.13986 * 311.30672 * 19 18 16
21 21 N 1.29835 * 128.52293 * 195.90024 * 20 19 18
22 22 N 1.28909 * 109.47980 * 179.84160 * 21 20 19
23 23 C 1.30839 * 109.74049 * 0.02562 * 22 21 20
24 24 C 1.50694 * 126.46607 * 180.02562 * 23 22 21
25 25 N 1.34697 * 107.06811 * 0.04801 * 23 22 21
26 26 C 1.46254 * 128.84544 * 179.84273 * 25 23 22
27 27 H 1.09008 * 109.47356 * 300.00124 * 1 2 3
28 28 H 1.09002 * 109.47262 * 59.99916 * 1 2 3
29 29 H 1.09000 * 109.47556 * 180.02562 * 1 2 3
30 30 H 1.08995 * 109.47276 * 239.99767 * 2 1 3
31 31 H 1.09008 * 109.46821 * 119.99529 * 2 1 3
32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5
33 33 H 0.97006 * 119.99940 * 265.00592 * 13 3 2
34 34 H 1.09003 * 109.50316 * 309.42069 * 18 16 14
35 35 H 1.09001 * 109.50135 * 69.52565 * 18 16 14
36 36 H 1.09004 * 109.74000 * 191.63604 * 19 18 16
37 37 H 1.09006 * 109.71594 * 70.95861 * 19 18 16
38 38 H 1.09000 * 109.47206 * 270.04334 * 24 23 22
39 39 H 1.08997 * 109.47298 * 30.04715 * 24 23 22
40 40 H 1.09002 * 109.46995 * 150.04656 * 24 23 22
41 41 H 1.09000 * 109.59431 * 77.32122 * 26 25 23
42 42 H 1.09001 * 109.59958 * 316.86364 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 0.8418
5 6 3.5419 1.4444 0.1239
6 1 4.1471 1.8889 -0.6523
7 6 4.1434 0.8734 1.2252
8 7 3.4064 0.3321 2.1704
9 14 6.0054 0.8688 1.3750
10 1 6.4483 2.0983 2.0803
11 1 6.4372 -0.3258 2.1443
12 1 6.6110 0.8303 0.0197
13 7 1.6524 2.0975 -1.2518
14 6 0.4351 2.6643 -1.3670
15 8 -0.3394 2.6326 -0.4341
16 6 0.0362 3.3376 -2.6549
17 1 0.7273 4.1533 -2.8673
18 6 0.0826 2.3197 -3.7981
19 6 -0.0906 3.0511 -5.1360
20 6 -1.2782 3.9729 -5.0169
21 7 -1.9461 4.5578 -5.9643
22 7 -2.8949 5.2624 -5.4495
23 6 -2.8685 5.1540 -4.1458
24 6 -3.8072 5.8192 -3.1726
25 7 -1.8436 4.3360 -3.8378
26 6 -1.3858 3.8951 -2.5206
27 1 -0.3634 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 1.8933 -0.5138 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 3.8296 -0.0699 2.9451
33 1 2.2719 2.1231 -1.9978
34 1 1.0426 1.8036 -3.7872
35 1 -0.7220 1.5951 -3.6730
36 1 -0.2653 2.3268 -5.9317
37 1 0.8052 3.6318 -5.3563
38 1 -3.4035 6.7897 -2.8839
39 1 -4.7810 5.9560 -3.6427
40 1 -3.9160 5.1930 -2.2870
41 1 -2.0495 3.1165 -2.1447
42 1 -1.3836 4.7404 -1.8324
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000613037132.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:03:48
Heat of formation + Delta-G solvation = 22.474679 kcal
Electronic energy + Delta-G solvation = -23950.177236 eV
Core-core repulsion = 20544.862691 eV
Total energy + Delta-G solvation = -3405.314545 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-43.38112 -39.73416 -36.90468 -35.20422 -34.25758 -32.60442 -31.75062 -30.95679
-30.34026 -27.44505 -27.20229 -24.96218 -23.38724 -22.97884 -21.49698 -20.65710
-19.69230 -19.37701 -17.62899 -16.73833 -16.55591 -15.81330 -15.48241 -15.14572
-14.95560 -14.49205 -14.26292 -14.04247 -13.89031 -13.38631 -13.22949 -12.83124
-12.79600 -12.50883 -12.17833 -12.09158 -11.69200 -11.59049 -11.36235 -11.27827
-11.20294 -11.05617 -10.94169 -10.43044 -10.39533 -10.30264 -10.15673 -9.75921
-9.24091 -9.17591 -9.03509 -8.61196 -8.02770 -6.23186 -4.33396 1.73435
2.34498 2.78518 3.05783 3.17266 3.24849 3.25781 3.71984 3.98368
4.21097 4.24468 4.36512 4.46440 4.57611 4.80213 4.92464 5.05002
5.08648 5.20411 5.22772 5.34513 5.39904 5.46802 5.52254 5.62591
5.73645 5.84480 5.92573 6.12150 6.26226 6.31244 6.51758 6.77937
6.89361 7.04580 7.19821 7.26459 7.47686 7.58451 7.76023 8.05428
8.44987 8.62502 8.67919 8.89570 9.34286 10.81976
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.028427 B = 0.003599 C = 0.003457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 984.747767 B = 7778.764345 C = 8097.863261
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.128 4.128
3 C 0.271 3.729
4 H 0.050 0.950
5 C -0.537 4.537
6 H 0.061 0.939
7 C 0.068 3.932
8 N -0.881 5.881
9 Si 0.901 3.099
10 H -0.279 1.279
11 H -0.285 1.285
12 H -0.273 1.273
13 N -0.700 5.700
14 C 0.512 3.488
15 O -0.546 6.546
16 C -0.126 4.126
17 H 0.105 0.895
18 C -0.118 4.118
19 C -0.031 4.031
20 C 0.174 3.826
21 N -0.295 5.295
22 N -0.304 5.304
23 C 0.177 3.823
24 C -0.067 4.067
25 N -0.467 5.467
26 C 0.124 3.876
27 H 0.049 0.951
28 H 0.037 0.963
29 H 0.023 0.977
30 H 0.032 0.968
31 H 0.100 0.900
32 H 0.265 0.735
33 H 0.390 0.610
34 H 0.095 0.905
35 H 0.078 0.922
36 H 0.103 0.897
37 H 0.097 0.903
38 H 0.085 0.915
39 H 0.094 0.906
40 H 0.079 0.921
41 H 0.103 0.897
42 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.326 5.144 -9.317 12.920
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.167 4.167
3 C 0.169 3.831
4 H 0.068 0.932
5 C -0.576 4.576
6 H 0.080 0.920
7 C -0.136 4.136
8 N -0.518 5.518
9 Si 0.728 3.272
10 H -0.205 1.205
11 H -0.210 1.210
12 H -0.198 1.198
13 N -0.347 5.347
14 C 0.295 3.705
15 O -0.425 6.425
16 C -0.148 4.148
17 H 0.123 0.877
18 C -0.156 4.156
19 C -0.071 4.071
20 C -0.094 4.094
21 N -0.134 5.134
22 N -0.145 5.145
23 C -0.091 4.091
24 C -0.126 4.126
25 N -0.158 5.158
26 C 0.002 3.998
27 H 0.069 0.931
28 H 0.056 0.944
29 H 0.042 0.958
30 H 0.051 0.949
31 H 0.118 0.882
32 H 0.075 0.925
33 H 0.222 0.778
34 H 0.113 0.887
35 H 0.097 0.903
36 H 0.121 0.879
37 H 0.116 0.884
38 H 0.104 0.896
39 H 0.112 0.888
40 H 0.098 0.902
41 H 0.121 0.879
42 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -8.283 5.437 -9.785 13.925
hybrid contribution 1.735 -0.404 1.099 2.093
sum -6.548 5.033 -8.686 11.986
Atomic orbital electron populations
1.21840 0.98382 0.98149 1.01066 1.21941 0.92551 0.99721 1.02471
1.18837 0.94350 0.89211 0.80693 0.93207 1.21205 0.90579 1.39228
1.06566 0.92047 1.24876 0.98678 0.94663 0.95348 1.69879 1.35235
1.37291 1.09416 0.86455 0.84719 0.77719 0.78264 1.20542 1.21021
1.19807 1.46494 1.14213 1.55269 1.18736 1.19770 0.83261 0.79615
0.87843 1.90706 1.51450 1.60073 1.40321 1.21676 0.96600 1.00127
0.96399 0.87698 1.21735 1.04905 0.97316 0.91677 1.20245 0.92124
0.95768 0.98956 1.24722 1.00443 1.02406 0.81779 1.74014 1.04216
1.09657 1.25550 1.74450 1.16646 1.19191 1.04195 1.24646 0.92832
0.96673 0.94914 1.20215 0.96932 0.99955 0.95533 1.46060 1.24477
1.36075 1.09139 1.21804 0.95808 1.01863 0.80355 0.93146 0.94446
0.95774 0.94935 0.88166 0.92457 0.77774 0.88687 0.90343 0.87863
0.88433 0.89620 0.88769 0.90197 0.87912 0.87992
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.78 8.51 37.16 0.32 -2.46 16
2 C -0.13 -2.86 5.45 -26.73 -0.15 -3.00 16
3 C 0.27 6.18 2.24 -69.08 -0.16 6.02 16
4 H 0.05 1.34 7.58 -51.93 -0.39 0.95 16
5 C -0.54 -13.19 8.73 -34.44 -0.30 -13.49 16
6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16
7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16
8 N -0.88 -23.46 11.28 55.43 0.63 -22.84 16
9 Si 0.90 19.63 29.54 -169.99 -5.02 14.60 16
10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16
13 N -0.70 -12.37 4.85 -54.93 -0.27 -12.63 16
14 C 0.51 8.29 5.72 -10.99 -0.06 8.23 16
15 O -0.55 -10.71 12.97 5.55 0.07 -10.64 16
16 C -0.13 -1.46 2.54 -91.53 -0.23 -1.69 16
17 H 0.10 1.10 8.12 -51.93 -0.42 0.68 16
18 C -0.12 -1.16 5.22 -26.42 -0.14 -1.29 16
19 C -0.03 -0.30 6.33 -27.60 -0.17 -0.47 16
20 C 0.17 2.27 7.75 -155.31 -1.20 1.07 16
21 N -0.29 -4.65 12.21 32.76 0.40 -4.25 16
22 N -0.30 -4.76 12.23 32.70 0.40 -4.36 16
23 C 0.18 2.25 8.07 -155.45 -1.25 1.00 16
24 C -0.07 -0.56 10.29 36.00 0.37 -0.19 16
25 N -0.47 -5.76 3.11 -110.86 -0.35 -6.10 16
26 C 0.12 1.42 5.46 -4.01 -0.02 1.40 16
27 H 0.05 1.10 7.85 -51.92 -0.41 0.69 16
28 H 0.04 0.71 5.65 -51.93 -0.29 0.42 16
29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16
31 H 0.10 2.53 5.94 -51.92 -0.31 2.22 16
32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16
33 H 0.39 5.87 7.87 -40.82 -0.32 5.55 16
34 H 0.09 0.84 7.32 -51.93 -0.38 0.46 16
35 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16
36 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16
37 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16
38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
40 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16
41 H 0.10 1.23 7.80 -51.93 -0.40 0.83 16
42 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16
LS Contribution 336.42 15.07 5.07 5.07
Total: -1.00 -30.97 336.42 -8.43 -39.40
By element:
Atomic # 1 Polarization: 11.28 SS G_CDS: -6.27 Total: 5.01 kcal
Atomic # 6 Polarization: -0.16 SS G_CDS: -3.10 Total: -3.26 kcal
Atomic # 7 Polarization: -51.00 SS G_CDS: 0.81 Total: -50.19 kcal
Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal
Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal
Total LS contribution 5.07 Total: 5.07 kcal
Total: -30.97 -8.43 -39.40 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000613037132.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.870 kcal
(2) G-P(sol) polarization free energy of solvation -30.965 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.905 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.475 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds