Wall clock time and date at job start Tue Mar 31 2020 03:03:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.47128 * 2 1
4 4 H 1.09007 * 109.47427 * 54.99507 * 3 2 1
5 5 C 1.50701 * 109.47419 * 174.99846 * 3 2 1
6 6 H 1.08002 * 119.99761 * 119.99343 * 5 3 2
7 7 C 1.37871 * 119.99694 * 300.27906 * 5 3 2
8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3
9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3
10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5
11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5
12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5
13 13 N 1.46499 * 109.47185 * 295.00236 * 3 2 1
14 14 C 1.34771 * 120.00694 * 84.99510 * 13 3 2
15 15 O 1.21290 * 119.99507 * 0.02562 * 14 13 3
16 16 C 1.50703 * 120.00516 * 180.02562 * 14 13 3
17 17 H 1.09001 * 109.44965 * 299.95950 * 16 14 13
18 18 C 1.53138 * 109.44958 * 59.89504 * 16 14 13
19 19 C 1.53457 * 109.30491 * 189.46584 * 18 16 14
20 20 C 1.50801 * 108.13986 * 311.30672 * 19 18 16
21 21 N 1.29835 * 128.52293 * 195.90024 * 20 19 18
22 22 N 1.28909 * 109.47980 * 179.84160 * 21 20 19
23 23 C 1.30839 * 109.74049 * 0.02562 * 22 21 20
24 24 C 1.50694 * 126.46607 * 180.02562 * 23 22 21
25 25 N 1.34697 * 107.06811 * 0.04801 * 23 22 21
26 26 C 1.46254 * 128.84544 * 179.84273 * 25 23 22
27 27 H 1.09008 * 109.47356 * 300.00124 * 1 2 3
28 28 H 1.09002 * 109.47262 * 59.99916 * 1 2 3
29 29 H 1.09000 * 109.47556 * 180.02562 * 1 2 3
30 30 H 1.08995 * 109.47276 * 239.99767 * 2 1 3
31 31 H 1.09008 * 109.46821 * 119.99529 * 2 1 3
32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5
33 33 H 0.97006 * 119.99940 * 265.00592 * 13 3 2
34 34 H 1.09003 * 109.50316 * 309.42069 * 18 16 14
35 35 H 1.09001 * 109.50135 * 69.52565 * 18 16 14
36 36 H 1.09004 * 109.74000 * 191.63604 * 19 18 16
37 37 H 1.09006 * 109.71594 * 70.95861 * 19 18 16
38 38 H 1.09000 * 109.47206 * 270.04334 * 24 23 22
39 39 H 1.08997 * 109.47298 * 30.04715 * 24 23 22
40 40 H 1.09002 * 109.46995 * 150.04656 * 24 23 22
41 41 H 1.09000 * 109.59431 * 77.32122 * 26 25 23
42 42 H 1.09001 * 109.59958 * 316.86364 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 0.8418
5 6 3.5419 1.4444 0.1239
6 1 4.1471 1.8889 -0.6523
7 6 4.1434 0.8734 1.2252
8 7 3.4064 0.3321 2.1704
9 14 6.0054 0.8688 1.3750
10 1 6.4483 2.0983 2.0803
11 1 6.4372 -0.3258 2.1443
12 1 6.6110 0.8303 0.0197
13 7 1.6524 2.0975 -1.2518
14 6 0.4351 2.6643 -1.3670
15 8 -0.3394 2.6326 -0.4341
16 6 0.0362 3.3376 -2.6549
17 1 0.7273 4.1533 -2.8673
18 6 0.0826 2.3197 -3.7981
19 6 -0.0906 3.0511 -5.1360
20 6 -1.2782 3.9729 -5.0169
21 7 -1.9461 4.5578 -5.9643
22 7 -2.8949 5.2624 -5.4495
23 6 -2.8685 5.1540 -4.1458
24 6 -3.8072 5.8192 -3.1726
25 7 -1.8436 4.3360 -3.8378
26 6 -1.3858 3.8951 -2.5206
27 1 -0.3634 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 1.8933 -0.5138 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 3.8296 -0.0699 2.9451
33 1 2.2719 2.1231 -1.9978
34 1 1.0426 1.8036 -3.7872
35 1 -0.7220 1.5951 -3.6730
36 1 -0.2653 2.3268 -5.9317
37 1 0.8052 3.6318 -5.3563
38 1 -3.4035 6.7897 -2.8839
39 1 -4.7810 5.9560 -3.6427
40 1 -3.9160 5.1930 -2.2870
41 1 -2.0495 3.1165 -2.1447
42 1 -1.3836 4.7404 -1.8324
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000613037132.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:03:48
Heat of formation + Delta-G solvation = 3.769886 kcal
Electronic energy + Delta-G solvation = -23950.988336 eV
Core-core repulsion = 20544.862691 eV
Total energy + Delta-G solvation = -3406.125646 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-44.35993 -41.06042 -38.03317 -36.81129 -35.18366 -34.27255 -33.08915 -32.20686
-31.31903 -28.95640 -28.31982 -26.11370 -24.79719 -24.21327 -22.51258 -21.99674
-21.19112 -20.50938 -18.98653 -18.04505 -17.59701 -17.20424 -16.98437 -16.35789
-16.16953 -15.89913 -15.21241 -15.03226 -14.92687 -14.72374 -14.55460 -13.95902
-13.77353 -13.48958 -13.47270 -13.19813 -13.12431 -13.07144 -12.88555 -12.68098
-12.60550 -12.22033 -12.14785 -12.04409 -11.99563 -11.54213 -11.37661 -11.13483
-11.02434 -10.65813 -10.47958 -10.01239 -9.62333 -8.14549 -6.31061 0.80194
1.39441 1.45999 1.47942 1.56832 1.76516 1.77762 2.35268 2.57869
3.09881 3.15755 3.30060 3.48444 3.59529 3.64886 3.96397 4.03613
4.22500 4.28729 4.36358 4.53582 4.58647 4.61478 4.62617 4.68015
4.79557 4.83790 4.87780 4.96775 5.02793 5.05759 5.10403 5.23762
5.30434 5.46408 5.59244 5.63592 5.82924 5.87715 5.93822 6.20581
6.77711 6.96402 7.35772 7.56060 7.67204 8.90253
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.028427 B = 0.003599 C = 0.003457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 984.747767 B = 7778.764345 C = 8097.863261
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.122 4.122
3 C 0.280 3.720
4 H 0.001 0.999
5 C -0.546 4.546
6 H 0.073 0.927
7 C 0.018 3.982
8 N -0.914 5.914
9 Si 0.964 3.036
10 H -0.281 1.281
11 H -0.288 1.288
12 H -0.260 1.260
13 N -0.698 5.698
14 C 0.514 3.486
15 O -0.581 6.581
16 C -0.111 4.111
17 H 0.125 0.875
18 C -0.111 4.111
19 C -0.025 4.025
20 C 0.174 3.826
21 N -0.333 5.333
22 N -0.344 5.344
23 C 0.178 3.822
24 C -0.067 4.067
25 N -0.468 5.468
26 C 0.128 3.872
27 H 0.025 0.975
28 H 0.049 0.951
29 H 0.041 0.959
30 H 0.043 0.957
31 H 0.068 0.932
32 H 0.263 0.737
33 H 0.406 0.594
34 H 0.111 0.889
35 H 0.072 0.928
36 H 0.119 0.881
37 H 0.119 0.881
38 H 0.101 0.899
39 H 0.102 0.898
40 H 0.093 0.907
41 H 0.096 0.904
42 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.494 5.404 -10.652 13.596
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.161 4.161
3 C 0.176 3.824
4 H 0.019 0.981
5 C -0.584 4.584
6 H 0.091 0.909
7 C -0.183 4.183
8 N -0.552 5.552
9 Si 0.789 3.211
10 H -0.207 1.207
11 H -0.214 1.214
12 H -0.184 1.184
13 N -0.346 5.346
14 C 0.299 3.701
15 O -0.462 6.462
16 C -0.133 4.133
17 H 0.143 0.857
18 C -0.150 4.150
19 C -0.064 4.064
20 C -0.095 4.095
21 N -0.172 5.172
22 N -0.184 5.184
23 C -0.090 4.090
24 C -0.126 4.126
25 N -0.159 5.159
26 C 0.006 3.994
27 H 0.044 0.956
28 H 0.068 0.932
29 H 0.060 0.940
30 H 0.062 0.938
31 H 0.087 0.913
32 H 0.073 0.927
33 H 0.241 0.759
34 H 0.130 0.870
35 H 0.091 0.909
36 H 0.137 0.863
37 H 0.137 0.863
38 H 0.120 0.880
39 H 0.121 0.879
40 H 0.112 0.888
41 H 0.115 0.885
42 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -7.453 5.715 -11.175 14.598
hybrid contribution 1.419 -0.455 1.542 2.144
sum -6.035 5.260 -9.633 12.525
Atomic orbital electron populations
1.21683 0.96900 0.99062 1.00418 1.21784 0.93781 0.99180 1.01349
1.18354 0.93421 0.89184 0.81428 0.98103 1.21597 0.91635 1.38529
1.06670 0.90878 1.25692 1.02811 0.94539 0.95228 1.70034 1.36890
1.38355 1.09968 0.85467 0.79776 0.77219 0.78607 1.20678 1.21357
1.18369 1.46191 1.15344 1.55475 1.17597 1.20433 0.82075 0.78620
0.88946 1.90702 1.52300 1.61094 1.42153 1.21551 0.96967 1.00697
0.94068 0.85712 1.21727 1.05630 0.96654 0.90969 1.20409 0.91446
0.95624 0.98948 1.25371 1.00705 1.01918 0.81485 1.73926 1.05249
1.11067 1.26956 1.74370 1.17668 1.20654 1.05748 1.25370 0.92880
0.95927 0.94796 1.20420 0.96513 1.00575 0.95081 1.46132 1.24504
1.36091 1.09182 1.21773 0.95520 1.02045 0.80064 0.95573 0.93215
0.94003 0.93845 0.91337 0.92729 0.75904 0.87028 0.90944 0.86333
0.86315 0.88027 0.87886 0.88850 0.88536 0.87207
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.97 8.51 71.98 0.61 -4.35 16
2 C -0.12 -5.45 5.45 30.59 0.17 -5.28 16
3 C 0.28 12.80 2.24 44.24 0.10 12.90 16
4 H 0.00 0.06 7.58 -2.38 -0.02 0.04 16
5 C -0.55 -26.49 8.73 25.60 0.22 -26.27 16
6 H 0.07 3.29 7.74 -2.91 -0.02 3.27 16
7 C 0.02 0.89 5.29 84.65 0.45 1.34 16
8 N -0.91 -49.71 11.28 21.45 0.24 -49.46 16
9 Si 0.96 39.85 29.54 68.60 2.03 41.87 16
10 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16
11 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16
12 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16
13 N -0.70 -23.62 4.85 -446.09 -2.16 -25.78 16
14 C 0.51 15.86 5.72 87.66 0.50 16.36 16
15 O -0.58 -22.61 12.97 -3.06 -0.04 -22.65 16
16 C -0.11 -2.28 2.54 -11.38 -0.03 -2.31 16
17 H 0.13 2.16 8.12 -2.39 -0.02 2.14 16
18 C -0.11 -1.82 5.22 30.79 0.16 -1.66 16
19 C -0.03 -0.39 6.33 30.03 0.19 -0.20 16
20 C 0.17 4.20 7.75 138.14 1.07 5.27 16
21 N -0.33 -10.25 12.21 -50.28 -0.61 -10.86 16
22 N -0.34 -10.61 12.23 -50.46 -0.62 -11.22 16
23 C 0.18 4.32 8.07 138.14 1.11 5.44 16
24 C -0.07 -1.00 10.29 71.23 0.73 -0.27 16
25 N -0.47 -10.71 3.11 -504.66 -1.57 -12.28 16
26 C 0.13 2.68 5.46 86.53 0.47 3.15 16
27 H 0.03 1.15 7.85 -2.38 -0.02 1.13 16
28 H 0.05 1.85 5.65 -2.39 -0.01 1.83 16
29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16
30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16
31 H 0.07 3.54 5.94 -2.38 -0.01 3.52 16
32 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16
33 H 0.41 11.14 7.87 -92.70 -0.73 10.41 16
34 H 0.11 1.52 7.32 -2.39 -0.02 1.50 16
35 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16
36 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16
37 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16
38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16
39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16
40 H 0.09 1.14 8.04 -2.39 -0.02 1.12 16
41 H 0.10 2.17 7.80 -2.39 -0.02 2.15 16
42 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16
Total: -1.00 -68.91 336.42 3.33 -65.58
By element:
Atomic # 1 Polarization: 20.37 SS G_CDS: 0.30 Total: 20.68 kcal
Atomic # 6 Polarization: -1.64 SS G_CDS: 5.76 Total: 4.12 kcal
Atomic # 7 Polarization: -104.88 SS G_CDS: -4.72 Total: -109.61 kcal
Atomic # 8 Polarization: -22.61 SS G_CDS: -0.04 Total: -22.65 kcal
Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.87 kcal
Total: -68.91 3.33 -65.58 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000613037132.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.350 kcal
(2) G-P(sol) polarization free energy of solvation -68.912 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.580 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.770 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds