Wall clock time and date at job start Tue Mar 31 2020 03:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34954 * 126.03278 * 2 1 4 4 C 1.35317 * 107.73988 * 180.14728 * 3 2 1 5 5 C 1.50704 * 126.03410 * 179.87378 * 4 3 2 6 6 C 1.53004 * 109.47270 * 269.71343 * 5 4 3 7 7 H 1.08997 * 110.87797 * 51.12374 * 6 5 4 8 8 C 1.55149 * 111.00441 * 175.00273 * 6 5 4 9 9 C 1.54326 * 102.94459 * 153.57818 * 8 6 5 10 10 N 1.47025 * 107.26801 * 337.81068 * 9 8 6 11 11 C 1.34774 * 125.64664 * 178.90411 * 10 9 8 12 12 O 1.21586 * 120.00048 * 180.02562 * 11 10 9 13 13 N 1.34773 * 119.99940 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47148 * 179.72251 * 14 13 11 16 16 H 1.08002 * 120.00318 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99922 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99801 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99967 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47280 * 89.99544 * 19 17 15 21 21 H 1.48504 * 109.46876 * 209.99818 * 19 17 15 22 22 H 1.48502 * 109.46730 * 329.99316 * 19 17 15 23 23 C 1.47424 * 108.70181 * 359.16419 * 10 9 8 24 24 C 1.39863 * 107.92307 * 359.61386 * 4 3 2 25 25 N 1.30839 * 108.20434 * 0.23823 * 24 4 3 26 26 H 1.08999 * 109.47066 * 270.30626 * 1 2 3 27 27 H 1.09000 * 109.47786 * 30.30606 * 1 2 3 28 28 H 1.09002 * 109.47151 * 150.30950 * 1 2 3 29 29 H 1.07996 * 126.13136 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.46818 * 149.71811 * 5 4 3 31 31 H 1.08999 * 109.47189 * 29.71978 * 5 4 3 32 32 H 1.09003 * 110.71983 * 35.21206 * 8 6 5 33 33 H 1.09005 * 110.87369 * 272.01445 * 8 6 5 34 34 H 1.08997 * 109.88333 * 218.38734 * 9 8 6 35 35 H 1.08998 * 110.00687 * 97.29358 * 9 8 6 36 36 H 0.97005 * 120.00161 * 359.72198 * 13 11 10 37 37 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 38 38 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 39 39 H 0.97005 * 119.99977 * 180.02562 * 18 17 15 40 40 H 1.08995 * 110.36547 * 142.74503 * 23 10 9 41 41 H 1.09003 * 110.36977 * 265.06438 * 23 10 9 42 42 H 1.08006 * 125.89723 * 180.26192 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6666 -0.0033 5 6 4.7679 1.5455 -0.0072 6 6 5.1824 1.8362 -1.4510 7 1 4.3358 2.2017 -2.0322 8 6 6.3645 2.8399 -1.4988 9 6 7.0583 2.4937 -2.8332 10 7 6.6805 1.1149 -3.1766 11 6 7.0650 0.4475 -4.2825 12 8 6.6898 -0.6946 -4.4646 13 7 7.8655 1.0460 -5.1866 14 6 8.2830 0.3207 -6.3891 15 6 9.1613 1.2090 -7.2320 16 1 9.3857 2.2136 -6.9051 17 6 9.6783 0.7393 -8.4208 18 7 10.4444 1.5147 -9.1566 19 14 9.2896 -0.9980 -8.9867 20 1 8.0572 -0.9847 -9.8151 21 1 10.4221 -1.5211 -9.7925 22 1 9.0808 -1.8692 -7.8024 23 6 5.8065 0.5857 -2.1139 24 6 3.5346 -0.7320 0.0036 25 7 2.2891 -1.1327 0.0056 26 1 -0.3633 0.0055 1.0276 27 1 -0.3635 0.8872 -0.5186 28 1 -0.3633 -0.8928 -0.5090 29 1 1.9281 2.1194 0.0004 30 1 5.5820 1.0367 0.5091 31 1 4.5440 2.4827 0.5023 32 1 7.0411 2.6793 -0.6594 33 1 6.0013 3.8676 -1.5083 34 1 8.1398 2.5641 -2.7179 35 1 6.7239 3.1754 -3.6152 36 1 8.1616 1.9586 -5.0434 37 1 8.8388 -0.5715 -6.1005 38 1 7.4026 0.0305 -6.9625 39 1 10.8079 1.1844 -9.9931 40 1 5.0280 -0.0455 -2.5424 41 1 6.3920 0.0252 -1.3851 42 1 4.4055 -1.3708 0.0070 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:41 Heat of formation + Delta-G solvation = 21.141733 kcal Electronic energy + Delta-G solvation = -22781.206285 eV Core-core repulsion = 19375.833939 eV Total energy + Delta-G solvation = -3405.372346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.09643 -41.16929 -38.83350 -36.17119 -35.06392 -34.36663 -33.48860 -31.54217 -30.11294 -29.69818 -27.91556 -26.22922 -24.39056 -23.51210 -22.01928 -21.54779 -21.10088 -20.67318 -19.53109 -18.35799 -17.83076 -17.27202 -16.85557 -16.40377 -16.23297 -15.94103 -15.29931 -15.16325 -14.87536 -14.59406 -14.41126 -14.30532 -14.01096 -13.80934 -13.70493 -13.57058 -13.25384 -13.13021 -12.99811 -12.71178 -12.48989 -12.02468 -11.93581 -11.90144 -11.66388 -11.46463 -11.27951 -11.22557 -10.92513 -10.32465 -10.13048 -9.40359 -9.20048 -8.40681 -6.47337 1.03195 1.32352 1.34052 1.48246 1.73271 1.77209 1.92336 2.16458 2.28225 2.94583 3.21679 3.62508 3.76587 3.83189 4.00550 4.12034 4.33401 4.36611 4.44727 4.45746 4.57050 4.66088 4.69585 4.73162 4.76885 4.83758 4.96407 4.99472 5.03081 5.04502 5.14488 5.22156 5.25505 5.36150 5.45844 5.52889 5.57952 5.77760 6.04298 6.24641 6.24920 6.53683 6.80139 7.09537 7.18922 7.62959 8.73957 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.002931 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.339895 B = 9551.709032 C =10258.118697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.387 5.387 3 C 0.060 3.940 4 C -0.248 4.248 5 C -0.016 4.016 6 C -0.081 4.081 7 H 0.079 0.921 8 C -0.109 4.109 9 C 0.087 3.913 10 N -0.640 5.640 11 C 0.706 3.294 12 O -0.648 6.648 13 N -0.720 5.720 14 C 0.252 3.748 15 C -0.545 4.545 16 H 0.060 0.940 17 C 0.029 3.971 18 N -0.929 5.929 19 Si 0.936 3.064 20 H -0.265 1.265 21 H -0.270 1.270 22 H -0.264 1.264 23 C 0.129 3.871 24 C 0.037 3.963 25 N -0.348 5.348 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.210 0.790 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.403 0.597 37 H 0.009 0.991 38 H 0.006 0.994 39 H 0.273 0.727 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.766 6.189 24.251 30.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.169 5.169 3 C -0.086 4.086 4 C -0.259 4.259 5 C -0.055 4.055 6 C -0.100 4.100 7 H 0.098 0.902 8 C -0.146 4.146 9 C -0.035 4.035 10 N -0.378 5.378 11 C 0.407 3.593 12 O -0.532 6.532 13 N -0.373 5.373 14 C 0.128 3.872 15 C -0.582 4.582 16 H 0.078 0.922 17 C -0.171 4.171 18 N -0.567 5.567 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.194 1.194 22 H -0.188 1.188 23 C 0.006 3.994 24 C -0.148 4.148 25 N -0.170 5.170 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.099 0.901 29 H 0.227 0.773 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.239 0.761 37 H 0.027 0.973 38 H 0.024 0.976 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.854 4.329 23.864 30.719 hybrid contribution 0.780 -0.073 -0.943 1.226 sum -18.074 4.255 22.921 29.498 Atomic orbital electron populations 1.22136 0.72483 1.05559 1.04489 1.48816 1.07850 1.03665 1.56564 1.22962 0.90497 0.94486 1.00703 1.20347 0.95777 0.93306 1.16486 1.19800 0.93127 0.98988 0.93571 1.22299 0.97503 0.93166 0.97052 0.90218 1.22694 0.96341 1.00637 0.94966 1.22320 1.00549 0.81360 0.99310 1.47649 1.53039 1.16321 1.20770 1.15825 0.79534 0.83860 0.80042 1.90819 1.63509 1.19482 1.79369 1.45114 1.51834 1.18095 1.22287 1.18954 0.93610 0.92258 0.82424 1.21225 1.30649 1.00748 1.05622 0.92205 1.25545 0.93996 1.01534 0.96061 1.69970 1.33928 1.38387 1.14448 0.85877 0.78764 0.80244 0.79125 1.18989 1.19449 1.18816 1.22196 0.91837 0.97544 0.87818 1.24082 0.95021 0.96140 0.99546 1.77296 1.02859 1.10366 1.26482 0.89435 0.86751 0.90086 0.77345 0.90218 0.87768 0.88555 0.87115 0.91224 0.91519 0.76139 0.97339 0.97577 0.91751 0.93958 0.91498 0.80133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 11.47 127.77 1.47 2.31 16 2 N -0.39 -6.84 4.01 -369.57 -1.48 -8.32 16 3 C 0.06 0.82 11.40 83.54 0.95 1.77 16 4 C -0.25 -4.04 5.11 -20.14 -0.10 -4.14 16 5 C -0.02 -0.18 5.22 29.85 0.16 -0.02 16 6 C -0.08 -1.24 2.98 -9.48 -0.03 -1.27 16 7 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 8 C -0.11 -1.33 6.42 31.78 0.20 -1.13 16 9 C 0.09 1.87 6.15 86.73 0.53 2.41 16 10 N -0.64 -20.30 3.33 -830.21 -2.76 -23.07 16 11 C 0.71 30.82 8.49 179.06 1.52 32.34 16 12 O -0.65 -34.03 16.60 -3.99 -0.07 -34.10 16 13 N -0.72 -32.16 5.51 -482.30 -2.66 -34.82 16 14 C 0.25 13.26 4.50 85.63 0.38 13.65 16 15 C -0.54 -31.16 9.83 25.60 0.25 -30.90 16 16 H 0.06 3.57 7.84 -2.91 -0.02 3.54 16 17 C 0.03 1.69 5.47 84.66 0.46 2.15 16 18 N -0.93 -56.18 13.96 21.45 0.30 -55.88 16 19 Si 0.94 45.52 27.47 68.60 1.88 47.40 16 20 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.26 -12.93 6.54 99.48 0.65 -12.28 16 23 C 0.13 3.34 6.04 86.78 0.52 3.86 16 24 C 0.04 0.81 11.88 85.23 1.01 1.83 16 25 N -0.35 -8.67 12.58 -57.02 -0.72 -9.39 16 26 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.21 1.04 8.06 -2.91 -0.02 1.01 16 30 H 0.08 0.84 7.96 -2.39 -0.02 0.82 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.90 8.04 -2.39 -0.02 0.88 16 33 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.40 15.89 7.31 -92.70 -0.68 15.21 16 37 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 38 H 0.01 0.35 7.57 -2.39 -0.02 0.33 16 39 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 40 H 0.04 1.36 8.04 -2.39 -0.02 1.34 16 41 H 0.07 1.64 7.90 -2.39 -0.02 1.62 16 42 H 0.18 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -82.65 350.59 2.11 -80.53 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.28 Total: 14.79 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 7.34 Total: 22.85 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -7.32 Total: -131.48 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.07 Total: -34.10 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Total: -82.65 2.11 -80.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.674 kcal (2) G-P(sol) polarization free energy of solvation -82.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds