Wall clock time and date at job start Tue Mar 31 2020 03:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47097 * 2 1 4 4 O 1.42894 * 109.47195 * 179.97438 * 3 2 1 5 5 C 1.35509 * 116.99778 * 180.02562 * 4 3 2 6 6 C 1.39445 * 120.46468 * 180.25851 * 5 4 3 7 7 C 1.38200 * 118.50615 * 180.28217 * 6 5 4 8 8 N 1.32460 * 119.26679 * 359.45986 * 7 6 5 9 9 C 1.32469 * 120.88917 * 0.27653 * 8 7 6 10 10 N 1.38396 * 119.18479 * 180.02562 * 9 8 7 11 11 C 1.46896 * 110.99908 * 124.30236 * 10 9 8 12 12 C 1.53244 * 109.34372 * 172.74354 * 11 10 9 13 13 N 1.47077 * 108.51776 * 53.83237 * 12 11 10 14 14 C 1.36932 * 120.88127 * 128.79628 * 13 12 11 15 15 H 1.07990 * 120.00061 * 333.52083 * 14 13 12 16 16 C 1.38817 * 119.99747 * 153.52076 * 14 13 12 17 17 N 1.31617 * 119.99746 * 159.46684 * 16 14 13 18 18 Si 1.86796 * 120.00327 * 339.47055 * 16 14 13 19 19 H 1.48503 * 109.47081 * 91.95069 * 18 16 14 20 20 H 1.48503 * 109.47224 * 211.95520 * 18 16 14 21 21 H 1.48498 * 109.47229 * 331.95348 * 18 16 14 22 22 C 1.47089 * 118.23768 * 308.81251 * 13 12 11 23 23 C 1.46901 * 111.00372 * 0.02562 * 10 9 8 24 24 N 1.32485 * 121.62487 * 0.02562 * 9 8 7 25 25 H 1.08998 * 109.47345 * 300.00093 * 1 2 3 26 26 H 1.09004 * 109.46984 * 60.00456 * 1 2 3 27 27 H 1.09005 * 109.46500 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47345 * 239.99907 * 2 1 3 29 29 H 1.08997 * 109.47255 * 119.99878 * 2 1 3 30 30 H 1.09007 * 109.46948 * 59.99870 * 3 2 1 31 31 H 1.08997 * 109.46968 * 300.00054 * 3 2 1 32 32 H 1.07996 * 120.74695 * 0.02562 * 6 5 4 33 33 H 1.07992 * 120.36573 * 179.73378 * 7 6 5 34 34 H 1.09004 * 109.49635 * 292.70506 * 11 10 9 35 35 H 1.09005 * 109.49375 * 52.78205 * 11 10 9 36 36 H 1.09000 * 109.62538 * 294.12353 * 12 11 10 37 37 H 1.08992 * 109.62837 * 173.54227 * 12 11 10 38 38 H 0.97004 * 120.00277 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.62635 * 291.48085 * 22 13 12 40 40 H 1.09001 * 109.62869 * 170.89417 * 22 13 12 41 41 H 1.09004 * 109.49014 * 307.21006 * 23 10 9 42 42 H 1.08996 * 109.49559 * 67.29247 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0841 2.6500 0.0012 6 6 5.4760 2.7343 -0.0036 7 6 6.0609 3.9864 0.0032 8 7 5.2881 5.0622 0.0032 9 6 3.9681 4.9513 0.0021 10 7 3.1944 6.0988 0.0016 11 6 2.2601 6.1032 -1.1320 12 6 1.3034 7.2926 -0.9967 13 7 2.1012 8.5187 -0.8435 14 6 1.8708 9.6108 -1.6368 15 1 1.4416 9.4834 -2.6196 16 6 2.1888 10.8817 -1.1777 17 7 2.3576 11.8673 -2.0334 18 14 2.3774 11.1929 0.6545 19 1 3.7991 11.0119 1.0435 20 1 1.9513 12.5806 0.9673 21 1 1.5318 10.2334 1.4092 22 6 3.1533 8.5406 0.1841 23 6 4.0371 7.3020 0.0016 24 7 3.3703 3.7690 0.0017 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.0833 1.8413 -0.0083 33 1 7.1362 4.0867 0.0041 34 1 2.8191 6.1903 -2.0638 35 1 1.6884 5.1751 -1.1358 36 1 0.6706 7.1555 -0.1198 37 1 0.6842 7.3680 -1.8904 38 1 2.5803 12.7553 -1.7127 39 1 2.6982 8.5235 1.1744 40 1 3.7571 9.4410 0.0709 41 1 4.7544 7.2436 0.8203 42 1 4.5710 7.3722 -0.9460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881898468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:22 Heat of formation + Delta-G solvation = 37.568909 kcal Electronic energy + Delta-G solvation = -23625.032140 eV Core-core repulsion = 20220.372130 eV Total energy + Delta-G solvation = -3404.660010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.42727 -40.37332 -39.23263 -36.44873 -35.07801 -34.19636 -33.69515 -32.15860 -31.70619 -28.68701 -27.70063 -25.55432 -25.27135 -24.24891 -23.62044 -22.44037 -21.40219 -19.84735 -18.92616 -18.72149 -17.61809 -17.49821 -16.67960 -16.45999 -16.39009 -16.02785 -15.86547 -15.60149 -15.37082 -15.01678 -14.86297 -14.51872 -14.25233 -14.01364 -13.63774 -13.53388 -13.03149 -12.82131 -12.71798 -12.45271 -12.29989 -12.12139 -12.03167 -11.91163 -11.78626 -11.71921 -11.57451 -11.51048 -10.78172 -10.62078 -10.33116 -9.45531 -9.01476 -8.17695 -5.51220 -0.07104 0.17430 1.30998 1.42721 1.51942 1.72161 2.09231 2.41059 2.69820 3.02020 3.12449 3.27450 3.52305 3.81266 3.92942 3.98906 4.04442 4.09187 4.23514 4.28099 4.32205 4.34794 4.36954 4.42349 4.52882 4.59007 4.61210 4.75927 4.78826 4.83063 4.91033 5.07815 5.12564 5.14968 5.15829 5.33994 5.51584 5.69544 5.81631 5.90022 6.10575 6.28507 6.83878 7.08874 7.56049 7.97931 9.01768 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.003905 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.953636 B = 7169.216384 C = 8002.427959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.065 3.935 4 O -0.302 6.302 5 C 0.368 3.632 6 C -0.270 4.270 7 C 0.196 3.804 8 N -0.592 5.592 9 C 0.519 3.481 10 N -0.464 5.464 11 C 0.070 3.930 12 C 0.150 3.850 13 N -0.623 5.623 14 C -0.252 4.252 15 H 0.058 0.942 16 C -0.031 4.031 17 N -0.954 5.954 18 Si 0.943 3.057 19 H -0.270 1.270 20 H -0.309 1.309 21 H -0.264 1.264 22 C 0.124 3.876 23 C 0.077 3.923 24 N -0.601 5.601 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.182 0.818 33 H 0.215 0.785 34 H 0.033 0.967 35 H 0.102 0.898 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.263 0.737 39 H 0.039 0.961 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -25.527 5.931 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.010 4.010 4 O -0.206 6.206 5 C 0.180 3.820 6 C -0.294 4.294 7 C 0.033 3.967 8 N -0.317 5.317 9 C 0.162 3.838 10 N -0.184 5.184 11 C -0.057 4.057 12 C 0.024 3.976 13 N -0.348 5.348 14 C -0.381 4.381 15 H 0.075 0.925 16 C -0.226 4.226 17 N -0.600 5.600 18 Si 0.772 3.228 19 H -0.196 1.196 20 H -0.237 1.237 21 H -0.189 1.189 22 C -0.001 4.001 23 C -0.051 4.051 24 N -0.336 5.336 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.200 0.800 33 H 0.231 0.769 34 H 0.051 0.949 35 H 0.121 0.879 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.158 -24.835 6.313 25.818 hybrid contribution 0.584 0.251 0.048 0.637 sum 3.742 -24.584 6.362 25.668 Atomic orbital electron populations 1.21688 0.93112 1.03308 1.02427 1.21524 0.96995 0.92941 1.03944 1.22936 0.75970 0.99817 1.02275 1.86224 1.24222 1.23455 1.86700 1.20241 0.90322 0.84151 0.87242 1.22116 0.91860 1.02221 1.13223 1.23615 1.01868 0.85474 0.85730 1.68499 1.04804 1.35828 1.22561 1.20768 0.86187 0.88335 0.88468 1.58305 1.17748 1.00131 1.42190 1.22575 0.93898 1.01046 0.88214 1.21191 0.92142 0.83594 1.00627 1.44576 1.36820 1.12587 1.40772 1.18864 1.38608 0.84861 0.95760 0.92452 1.25850 1.00214 0.95223 1.01321 1.69953 1.52346 1.02361 1.35350 0.85976 0.78483 0.75747 0.82607 1.19632 1.23741 1.18861 1.21560 0.90193 0.96447 0.91948 1.22344 0.93899 0.86799 1.02088 1.67485 1.41955 0.98226 1.25946 0.92402 0.92342 0.90312 0.90408 0.90440 0.92175 0.92021 0.80019 0.76880 0.94880 0.87943 0.93825 0.90485 0.92802 0.94356 0.91658 0.88608 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.57 6.30 30.60 0.19 -1.37 16 3 C 0.06 1.27 5.34 71.98 0.38 1.65 16 4 O -0.30 -6.75 10.13 -88.11 -0.89 -7.64 16 5 C 0.37 9.30 7.53 84.85 0.64 9.94 16 6 C -0.27 -5.26 10.12 22.55 0.23 -5.03 16 7 C 0.20 4.01 11.29 84.59 0.95 4.96 16 8 N -0.59 -17.50 8.66 -198.22 -1.72 -19.22 16 9 C 0.52 17.02 7.18 261.51 1.88 18.90 16 10 N -0.46 -16.69 4.69 -707.88 -3.32 -20.01 16 11 C 0.07 2.45 5.49 86.39 0.47 2.92 16 12 C 0.15 5.91 6.69 86.35 0.58 6.48 16 13 N -0.62 -29.93 2.82 -698.11 -1.97 -31.90 16 14 C -0.25 -14.34 10.08 84.04 0.85 -13.49 16 15 H 0.06 3.53 8.05 -2.92 -0.02 3.51 16 16 C -0.03 -1.81 5.24 84.86 0.44 -1.37 16 17 N -0.95 -59.96 13.97 21.65 0.30 -59.66 16 18 Si 0.94 46.68 24.31 68.60 1.67 48.35 16 19 H -0.27 -12.51 6.58 99.48 0.65 -11.86 16 20 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 21 H -0.26 -12.69 6.61 99.48 0.66 -12.04 16 22 C 0.12 5.45 4.35 86.35 0.38 5.83 16 23 C 0.08 2.93 4.79 86.39 0.41 3.34 16 24 N -0.60 -18.14 8.57 -310.88 -2.66 -20.80 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.66 8.14 -2.38 -0.02 0.65 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.28 8.12 -2.38 -0.02 1.26 16 31 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 32 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.21 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 3.20 7.51 -2.38 -0.02 3.18 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 2.94 7.95 -2.39 -0.02 2.92 16 38 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.04 1.67 6.94 -2.39 -0.02 1.66 16 40 H 0.07 3.09 4.60 -2.39 -0.01 3.08 16 41 H 0.10 3.34 7.62 -2.38 -0.02 3.33 16 42 H 0.04 1.74 8.13 -2.39 -0.02 1.72 16 Total: -1.00 -70.04 336.21 0.44 -69.61 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.90 Total: 9.46 kcal Atomic # 6 Polarization: 23.69 SS G_CDS: 8.12 Total: 31.81 kcal Atomic # 7 Polarization: -142.22 SS G_CDS: -9.36 Total: -151.59 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.89 Total: -7.64 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.67 Total: 48.35 kcal Total: -70.04 0.44 -69.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881898468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.177 kcal (2) G-P(sol) polarization free energy of solvation -70.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds