Wall clock time and date at job start Tue Mar 31 2020 03:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46501 * 109.47490 * 2 1 4 4 C 1.35848 * 126.13382 * 269.98075 * 3 2 1 5 5 N 1.30176 * 109.00037 * 179.78047 * 4 3 2 6 6 C 1.35757 * 108.86604 * 0.38057 * 5 4 3 7 7 C 1.47330 * 126.23654 * 179.88658 * 6 5 4 8 8 O 1.21623 * 120.00245 * 179.68803 * 7 6 5 9 9 N 1.34783 * 119.99522 * 359.68477 * 7 6 5 10 10 C 1.47428 * 125.64363 * 180.02562 * 9 7 6 11 11 C 1.54905 * 104.83005 * 204.09303 * 10 9 7 12 12 H 1.09004 * 111.00717 * 81.06589 * 11 10 9 13 13 C 1.52998 * 111.00757 * 204.91596 * 11 10 9 14 14 C 1.55162 * 101.58494 * 322.99378 * 11 10 9 15 15 H 1.08995 * 110.86872 * 277.06330 * 14 11 10 16 16 N 1.46499 * 110.72136 * 153.86398 * 14 11 10 17 17 C 1.36931 * 120.00122 * 160.02424 * 16 14 11 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48501 * 109.46922 * 269.71949 * 21 19 17 23 23 H 1.48496 * 109.47354 * 29.72145 * 21 19 17 24 24 H 1.48501 * 109.47428 * 149.72253 * 21 19 17 25 25 C 1.47017 * 125.65073 * 359.97438 * 9 7 6 26 26 C 1.35384 * 126.13367 * 90.00015 * 3 2 1 27 27 H 1.09002 * 109.47748 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46889 * 300.00190 * 1 2 3 29 29 H 1.09001 * 109.47500 * 59.99441 * 1 2 3 30 30 H 1.08998 * 109.47257 * 240.00175 * 2 1 3 31 31 H 1.09001 * 109.47500 * 120.00559 * 2 1 3 32 32 H 1.07996 * 125.50063 * 0.02562 * 4 3 2 33 33 H 1.09001 * 110.36863 * 322.93452 * 10 9 7 34 34 H 1.09000 * 110.36244 * 85.14936 * 10 9 7 35 35 H 1.09000 * 109.47369 * 172.19661 * 13 11 10 36 36 H 1.08999 * 109.47009 * 292.20242 * 13 11 10 37 37 H 1.09002 * 109.46507 * 52.19707 * 13 11 10 38 38 H 0.97001 * 119.99790 * 340.01941 * 16 14 11 39 39 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.88283 * 59.55899 * 25 9 7 41 41 H 1.09004 * 110.01221 * 298.46326 * 25 9 7 42 42 H 1.07996 * 126.56159 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1363 -1.0972 5 7 2.6959 3.3107 -0.7137 6 6 2.7142 3.3478 0.6433 7 6 3.1184 4.4927 1.4778 8 8 3.0857 4.4031 2.6903 9 7 3.5245 5.6394 0.8975 10 6 3.9550 6.8568 1.6090 11 6 3.7151 8.0099 0.6028 12 1 2.6690 8.3164 0.6019 13 6 4.6320 9.1978 0.9011 14 6 4.0980 7.3354 -0.7411 15 1 5.1764 7.3641 -0.8965 16 7 3.3980 7.9730 -1.8590 17 6 3.8733 7.8304 -3.1352 18 1 4.7640 7.2475 -3.3178 19 6 3.2104 8.4349 -4.1945 20 7 2.1246 9.1449 -3.9721 21 14 3.8544 8.2338 -5.9363 22 1 4.8093 9.3297 -6.2406 23 1 4.5463 6.9257 -6.0604 24 1 2.7197 8.2863 -6.8928 25 6 3.6125 5.8831 -0.5496 26 6 2.2845 2.1338 1.0934 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.1723 1.8155 -2.1221 33 1 3.3536 7.0047 2.5060 34 1 5.0117 6.7910 1.8682 35 1 4.5436 9.9345 0.1026 36 1 4.3416 9.6520 1.8484 37 1 5.6641 8.8530 0.9647 38 1 2.5978 8.4961 -1.6951 39 1 1.6611 9.5670 -4.7123 40 1 2.6312 5.7570 -1.0072 41 1 4.3238 5.1918 -1.0017 42 1 2.1778 1.8308 2.1245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939543269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:34 Heat of formation + Delta-G solvation = 20.987207 kcal Electronic energy + Delta-G solvation = -23493.407279 eV Core-core repulsion = 20088.028232 eV Total energy + Delta-G solvation = -3405.379047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.15184 -40.83045 -38.80693 -35.97118 -35.77827 -33.85138 -32.47249 -31.26943 -30.65861 -29.06147 -27.61227 -25.87390 -24.79623 -23.96947 -22.50867 -21.84447 -21.32257 -20.30117 -19.04122 -18.43073 -17.50040 -17.32462 -16.60977 -16.46341 -16.07167 -15.50032 -15.36625 -15.22098 -14.89842 -14.63732 -14.54339 -14.47548 -14.03410 -13.76390 -13.44543 -13.39266 -13.00078 -12.96058 -12.80418 -12.79671 -12.24404 -12.18601 -12.10183 -12.00651 -11.65310 -11.43814 -11.23683 -11.08007 -10.78616 -10.73357 -9.81729 -9.43850 -9.00941 -7.90151 -5.19530 0.56262 1.46313 1.50918 1.52217 1.60824 1.70800 2.13558 2.52835 2.60636 3.35170 3.41678 3.63741 3.78647 3.84916 3.89416 3.96991 4.10567 4.14111 4.25585 4.41050 4.42279 4.44510 4.51166 4.65779 4.68783 4.72386 4.83647 4.94789 5.02394 5.11365 5.18344 5.22904 5.23262 5.31599 5.36762 5.46844 5.54840 5.59619 6.14416 6.30254 6.52594 6.83562 7.20366 7.37591 8.08927 8.34444 9.33180 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.004702 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.523060 B = 5954.085561 C = 7760.020915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 N -0.447 5.447 4 C 0.187 3.813 5 N -0.496 5.496 6 C -0.102 4.102 7 C 0.605 3.395 8 O -0.585 6.585 9 N -0.605 5.605 10 C 0.117 3.883 11 C -0.103 4.103 12 H 0.069 0.931 13 C -0.126 4.126 14 C 0.168 3.832 15 H 0.066 0.934 16 N -0.720 5.720 17 C -0.237 4.237 18 H 0.076 0.924 19 C -0.071 4.071 20 N -0.969 5.969 21 Si 0.970 3.030 22 H -0.287 1.287 23 H -0.270 1.270 24 H -0.298 1.298 25 C 0.118 3.882 26 C 0.048 3.952 27 H 0.102 0.898 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.241 0.759 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.374 0.626 39 H 0.250 0.750 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 -19.043 9.821 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.026 4.026 3 N -0.128 5.128 4 C -0.097 4.097 5 N -0.214 5.214 6 C -0.230 4.230 7 C 0.396 3.604 8 O -0.468 6.468 9 N -0.336 5.336 10 C -0.006 4.006 11 C -0.123 4.123 12 H 0.087 0.913 13 C -0.183 4.183 14 C 0.057 3.943 15 H 0.084 0.916 16 N -0.359 5.359 17 C -0.369 4.369 18 H 0.094 0.906 19 C -0.263 4.263 20 N -0.620 5.620 21 Si 0.800 3.200 22 H -0.214 1.214 23 H -0.194 1.194 24 H -0.224 1.224 25 C -0.008 4.008 26 C -0.094 4.094 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.257 0.743 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.207 0.793 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.273 -18.677 9.787 21.087 hybrid contribution -0.576 -0.238 -0.693 0.932 sum -0.302 -18.915 9.094 20.990 Atomic orbital electron populations 1.22170 0.93613 1.04477 1.02357 1.22354 0.95913 0.77032 1.07313 1.45857 1.47154 1.14344 1.05476 1.25874 1.02012 0.86631 0.95171 1.70798 1.19088 1.21021 1.10540 1.20469 1.15411 0.96087 0.91045 1.16999 0.76240 0.81212 0.85947 1.90700 1.58442 1.83457 1.14163 1.48345 1.63680 1.12654 1.08913 1.22357 1.00586 0.82294 0.95315 1.22525 1.00660 0.95294 0.93818 0.91258 1.21559 0.98873 0.96109 1.01769 1.21500 0.95780 0.89651 0.87327 0.91606 1.42430 1.31280 1.59824 1.02372 1.19601 1.07349 1.25070 0.84880 0.90569 1.25497 0.98233 1.00869 1.01679 1.69827 1.21232 1.39509 1.31420 0.85183 0.76753 0.78005 0.80090 1.21399 1.19442 1.22436 1.22716 1.00834 0.98667 0.78602 1.22739 1.01287 0.90922 0.94427 0.87955 0.93108 0.92622 0.85850 0.86799 0.74311 0.90410 0.89850 0.93323 0.90682 0.91393 0.79342 0.94115 0.93211 0.92783 0.77859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.24 71.98 0.74 -0.57 16 2 C 0.09 0.70 6.84 86.38 0.59 1.29 16 3 N -0.45 -8.14 2.73 -528.40 -1.44 -9.58 16 4 C 0.19 4.36 12.55 180.10 2.26 6.62 16 5 N -0.50 -16.77 8.77 -188.81 -1.66 -18.43 16 6 C -0.10 -3.45 6.82 40.51 0.28 -3.18 16 7 C 0.61 23.28 7.84 86.63 0.68 23.96 16 8 O -0.59 -23.84 17.14 -4.11 -0.07 -23.91 16 9 N -0.61 -22.92 3.33 -815.75 -2.71 -25.64 16 10 C 0.12 3.80 6.37 86.85 0.55 4.35 16 11 C -0.10 -3.53 3.25 -9.40 -0.03 -3.56 16 12 H 0.07 2.57 8.00 -2.38 -0.02 2.55 16 13 C -0.13 -3.61 9.31 71.98 0.67 -2.94 16 14 C 0.17 6.91 3.06 46.18 0.14 7.05 16 15 H 0.07 2.68 8.02 -2.39 -0.02 2.66 16 16 N -0.72 -36.65 5.18 -317.33 -1.64 -38.29 16 17 C -0.24 -13.15 9.98 84.03 0.84 -12.31 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 20 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 21 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 25 C 0.12 4.84 5.27 86.73 0.46 5.30 16 26 C 0.05 1.17 11.26 83.72 0.94 2.11 16 27 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.24 3.64 8.06 -2.91 -0.02 3.61 16 33 H 0.08 2.46 8.04 -2.39 -0.02 2.44 16 34 H 0.08 2.42 7.99 -2.39 -0.02 2.40 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 38 H 0.37 20.58 7.71 -92.71 -0.72 19.87 16 39 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 40 H 0.05 2.35 7.51 -2.39 -0.02 2.34 16 41 H 0.05 2.28 7.75 -2.38 -0.02 2.27 16 42 H 0.20 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -76.16 351.70 3.67 -72.49 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.30 Total: 29.82 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 8.58 Total: 24.54 kcal Atomic # 7 Polarization: -143.93 SS G_CDS: -7.17 Total: -151.10 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.07 Total: -23.91 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -76.16 3.67 -72.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939543269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.477 kcal (2) G-P(sol) polarization free energy of solvation -76.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds