Wall clock time and date at job start Tue Mar 31 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46799 * 2 1 4 4 C 1.35367 * 126.38459 * 84.99739 * 3 2 1 5 5 C 1.41500 * 105.50556 * 180.02562 * 4 3 2 6 6 C 1.47711 * 126.52209 * 179.97438 * 5 4 3 7 7 O 1.21571 * 119.99848 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00150 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00002 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47344 * 34.99749 * 9 8 6 11 11 C 1.53009 * 109.46956 * 274.99758 * 9 8 6 12 12 C 1.53002 * 109.47367 * 155.00160 * 9 8 6 13 13 C 1.53944 * 113.74109 * 278.74055 * 12 9 8 14 14 N 1.47806 * 86.03824 * 222.08193 * 13 12 9 15 15 C 1.36934 * 134.45919 * 204.64183 * 14 13 12 16 16 H 1.08002 * 119.99878 * 173.34770 * 15 14 13 17 17 C 1.38812 * 120.00134 * 353.35080 * 15 14 13 18 18 N 1.31621 * 119.99618 * 5.06251 * 17 15 14 19 19 Si 1.86795 * 120.00371 * 185.06048 * 17 15 14 20 20 H 1.48499 * 109.46985 * 94.98672 * 19 17 15 21 21 H 1.48497 * 109.47548 * 214.98417 * 19 17 15 22 22 H 1.48497 * 109.47310 * 334.98979 * 19 17 15 23 23 C 1.47584 * 91.04829 * 24.54756 * 14 13 12 24 24 N 1.31814 * 106.96153 * 0.02562 * 5 4 3 25 25 N 1.28467 * 110.07020 * 359.72062 * 24 5 4 26 26 H 0.97005 * 124.88649 * 180.29523 * 25 24 5 27 27 H 1.09002 * 109.47657 * 299.99744 * 1 2 3 28 28 H 1.08998 * 109.47315 * 60.00194 * 1 2 3 29 29 H 1.09005 * 109.46624 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47315 * 119.99806 * 2 1 3 31 31 H 1.08993 * 109.47554 * 240.00431 * 2 1 3 32 32 H 1.08002 * 127.24698 * 359.97438 * 4 3 2 33 33 H 0.97001 * 120.00061 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.47087 * 300.00149 * 11 9 8 35 35 H 1.09001 * 109.46806 * 60.00427 * 11 9 8 36 36 H 1.09002 * 109.46945 * 179.97438 * 11 9 8 37 37 H 1.09008 * 112.94616 * 50.32750 * 12 9 8 38 38 H 1.08999 * 113.76823 * 336.34681 * 13 12 9 39 39 H 1.09002 * 113.76938 * 107.74340 * 13 12 9 40 40 H 0.97004 * 119.99681 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.76573 * 221.14694 * 23 14 13 42 42 H 1.08997 * 113.86905 * 89.77252 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2103 2.2097 1.0856 5 6 2.6918 3.4417 0.5832 6 6 3.0404 4.6384 1.3759 7 8 2.9224 4.6215 2.5858 8 7 3.4892 5.7488 0.7580 9 6 3.8354 6.9354 1.5442 10 1 4.2662 6.6271 2.4969 11 6 2.5746 7.7641 1.7990 12 6 4.8529 7.7789 0.7735 13 6 6.3017 7.2752 0.9045 14 7 6.6750 8.6981 1.0477 15 6 7.8172 9.4178 0.8185 16 1 7.8038 10.4942 0.9050 17 6 8.9924 8.7637 0.4749 18 7 8.9866 7.4633 0.2718 19 14 10.5821 9.7291 0.3006 20 1 11.3393 9.6704 1.5766 21 1 11.4018 9.1407 -0.7889 22 1 10.2690 11.1439 -0.0244 23 6 5.3223 9.0321 1.5343 24 7 2.7691 3.3189 -0.7269 25 7 2.3927 2.1431 -1.0825 26 1 2.3689 1.8211 -1.9972 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5137 -0.8899 32 1 2.0233 1.9529 2.1179 33 1 3.5829 5.7623 -0.2074 34 1 2.1439 8.0724 0.8464 35 1 1.8498 7.1632 2.3482 36 1 2.8322 8.6468 2.3844 37 1 4.5487 7.9777 -0.2542 38 1 6.4811 6.6816 1.8010 39 1 6.6878 6.8074 -0.0012 40 1 9.8079 7.0062 0.0321 41 1 4.9281 9.9646 1.1306 42 1 5.2116 8.9566 2.6160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969323795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:14 Heat of formation + Delta-G solvation = 79.378206 kcal Electronic energy + Delta-G solvation = -22894.412209 eV Core-core repulsion = 19491.565186 eV Total energy + Delta-G solvation = -3402.847023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.80673 -39.45156 -37.88392 -34.75149 -34.56723 -32.30697 -31.89830 -30.31932 -29.37384 -27.45214 -25.09273 -24.28037 -24.09402 -23.44496 -21.22951 -21.00880 -20.00471 -18.82273 -17.84721 -16.85034 -16.57878 -16.01519 -15.75665 -14.85454 -14.80502 -14.42566 -14.33838 -13.92621 -13.78762 -13.54874 -13.32699 -12.99621 -12.78716 -12.37795 -12.04454 -11.98179 -11.59824 -11.57927 -11.27263 -11.22632 -10.92859 -10.86251 -10.68833 -10.28012 -10.02188 -9.74498 -9.68002 -9.49174 -9.33882 -9.12793 -8.73812 -8.68000 -6.80174 -5.72617 -3.03691 1.55817 1.98585 2.67996 3.39877 3.42575 3.47444 3.49428 3.58159 4.27942 4.39087 4.50154 4.58631 4.84109 5.06423 5.14427 5.22426 5.33115 5.37330 5.38982 5.48088 5.51898 5.60024 5.74383 5.74989 5.80809 5.89367 6.03021 6.12132 6.24803 6.33635 6.43796 6.48885 6.67113 6.74656 6.79965 6.90966 7.30890 7.43144 7.62104 7.63103 7.90647 8.03264 8.45309 9.09722 9.76066 10.67101 11.45020 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.003071 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.044030 B = 9114.779323 C = 9916.521984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C 0.012 3.988 4 C -0.176 4.176 5 C -0.005 4.005 6 C 0.601 3.399 7 O -0.537 6.537 8 N -0.703 5.703 9 C 0.150 3.850 10 H 0.089 0.911 11 C -0.158 4.158 12 C -0.147 4.147 13 C 0.174 3.826 14 N -0.614 5.614 15 C -0.223 4.223 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.919 5.919 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.130 3.870 24 N -0.256 5.256 25 N -0.381 5.381 26 H 0.443 0.557 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.405 0.595 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.028 0.972 39 H 0.067 0.933 40 H 0.253 0.747 41 H 0.044 0.956 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.613 -14.233 -3.079 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.114 4.114 4 C -0.204 4.204 5 C -0.166 4.166 6 C 0.385 3.615 7 O -0.413 6.413 8 N -0.353 5.353 9 C 0.045 3.955 10 H 0.107 0.893 11 C -0.216 4.216 12 C -0.167 4.167 13 C 0.049 3.951 14 N -0.340 5.340 15 C -0.350 4.350 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.566 5.566 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.004 3.996 24 N -0.092 5.092 25 N -0.095 5.095 26 H 0.287 0.713 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.240 0.760 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -18.031 -13.540 -3.203 22.776 hybrid contribution 0.857 -0.179 -0.328 0.934 sum -17.175 -13.720 -3.531 22.264 Atomic orbital electron populations 1.21785 0.94057 1.02203 1.02676 1.20109 0.96385 0.88742 1.04019 1.21430 1.05634 0.96893 0.87427 1.21504 1.06738 0.92391 0.99744 1.22049 1.07693 0.97065 0.89814 1.16877 0.77144 0.81127 0.86325 1.90778 1.54276 1.83072 1.13144 1.45951 1.65262 1.12721 1.11352 1.21140 0.94758 0.83850 0.95716 0.89294 1.22136 0.97757 1.00137 1.01616 1.23829 0.95939 0.97614 0.99314 1.22229 0.86040 0.87387 0.99483 1.45989 1.08320 1.04819 1.74832 1.19026 0.85741 0.90088 1.40172 0.90252 1.24828 0.97589 0.95778 1.02319 1.69847 1.26563 1.07278 1.52872 0.86139 0.83718 0.78878 0.77305 1.21659 1.21773 1.20577 1.22493 0.86546 0.94760 0.95835 1.73588 1.17940 1.02434 1.15227 1.43301 1.47719 1.08631 1.09860 0.71275 0.91824 0.92725 0.91779 0.89000 0.90662 0.82116 0.75985 0.92731 0.92714 0.91355 0.89396 0.95391 0.91493 0.93708 0.93817 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.16 0.37 -0.35 16 2 C -0.05 -0.28 6.49 -27.88 -0.18 -0.47 16 3 C 0.01 0.11 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -2.11 10.73 -39.36 -0.42 -2.53 16 5 C 0.00 -0.07 7.13 -82.76 -0.59 -0.66 16 6 C 0.60 9.99 7.79 -12.39 -0.10 9.89 16 7 O -0.54 -10.34 16.59 5.30 0.09 -10.25 16 8 N -0.70 -11.00 5.07 -54.79 -0.28 -11.28 16 9 C 0.15 2.48 2.38 -67.93 -0.16 2.32 16 10 H 0.09 1.66 7.41 -51.93 -0.39 1.28 16 11 C -0.16 -2.23 9.31 37.16 0.35 -1.89 16 12 C -0.15 -2.76 3.47 -89.70 -0.31 -3.07 16 13 C 0.17 4.21 6.99 -2.84 -0.02 4.19 16 14 N -0.61 -16.18 3.70 -177.72 -0.66 -16.84 16 15 C -0.22 -6.41 10.70 -15.06 -0.16 -6.57 16 16 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 18 N -0.92 -27.99 11.51 55.49 0.64 -27.35 16 19 Si 0.91 22.60 29.56 -169.99 -5.02 17.58 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 C 0.13 2.69 7.64 -2.97 -0.02 2.67 16 24 N -0.26 -3.25 11.92 33.42 0.40 -2.86 16 25 N -0.38 -3.47 6.83 33.50 0.23 -3.24 16 26 H 0.44 2.38 8.96 -190.44 -1.71 0.67 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.41 5.86 8.33 -40.82 -0.34 5.52 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 38 H 0.03 0.72 7.99 -51.93 -0.41 0.31 16 39 H 0.07 1.78 7.37 -51.93 -0.38 1.40 16 40 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -35.21 354.15 -8.96 -44.18 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.81 Total: 1.94 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.88 Total: 2.77 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.33 Total: -61.55 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.21 -8.96 -44.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969323795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.555 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds