Wall clock time and date at job start Tue Mar 31 2020 03:20:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46499 * 109.47055 * 2 1
4 4 N 1.28439 * 125.19219 * 272.11830 * 3 2 1
5 5 C 1.30862 * 110.92961 * 179.97438 * 4 3 2
6 6 C 1.39677 * 107.86026 * 359.77633 * 5 4 3
7 7 C 1.36596 * 125.19035 * 92.09798 * 3 2 1
8 8 C 1.47164 * 126.88358 * 359.97438 * 7 3 2
9 9 O 1.21633 * 120.00190 * 5.33904 * 8 7 3
10 10 N 1.34776 * 120.00267 * 185.33478 * 8 7 3
11 11 C 1.46504 * 120.00323 * 174.52200 * 10 8 7
12 12 H 1.09005 * 109.46684 * 35.00431 * 11 10 8
13 13 C 1.52999 * 109.47297 * 275.00389 * 11 10 8
14 14 C 1.52998 * 109.47025 * 155.00420 * 11 10 8
15 15 C 1.53503 * 114.20506 * 180.02562 * 14 11 10
16 16 N 1.47071 * 87.98693 * 87.51646 * 15 14 11
17 17 C 1.36934 * 136.05584 * 207.08186 * 16 15 14
18 18 H 1.07998 * 120.00105 * 6.21685 * 17 16 15
19 19 C 1.38808 * 119.99819 * 186.21556 * 17 16 15
20 20 N 1.31620 * 120.00074 * 6.03761 * 19 17 16
21 21 Si 1.86805 * 120.00196 * 186.03492 * 19 17 16
22 22 H 1.48491 * 109.47104 * 265.01196 * 21 19 17
23 23 H 1.48498 * 109.46663 * 25.01359 * 21 19 17
24 24 H 1.48499 * 109.46991 * 145.00871 * 21 19 17
25 25 C 1.47066 * 87.88366 * 27.34231 * 16 15 14
26 26 H 1.08998 * 109.47119 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47389 * 299.99762 * 1 2 3
28 28 H 1.09003 * 109.47483 * 59.99911 * 1 2 3
29 29 H 1.09002 * 109.46976 * 240.00240 * 2 1 3
30 30 H 1.09003 * 109.47483 * 120.00089 * 2 1 3
31 31 H 1.08002 * 126.07347 * 180.02562 * 5 4 3
32 32 H 1.08003 * 127.31780 * 180.26607 * 6 5 4
33 33 H 0.97000 * 120.00205 * 354.52788 * 10 8 7
34 34 H 1.08997 * 109.47083 * 300.00275 * 13 11 10
35 35 H 1.09003 * 109.46792 * 59.99743 * 13 11 10
36 36 H 1.09000 * 109.46865 * 179.97438 * 13 11 10
37 37 H 1.08999 * 113.41724 * 46.80146 * 14 11 10
38 38 H 1.08998 * 113.46394 * 332.73913 * 15 14 11
39 39 H 1.08992 * 113.51806 * 202.30829 * 15 14 11
40 40 H 0.97006 * 120.00285 * 179.97438 * 20 19 17
41 41 H 1.09000 * 113.46909 * 87.43398 * 25 16 15
42 42 H 1.08995 * 113.46956 * 217.87585 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0182 1.3812 0.0000
4 7 2.2284 2.0920 -1.0489
5 6 2.6619 3.2840 -0.7267
6 6 2.7344 3.3513 0.6665
7 6 2.3192 2.1098 1.1156
8 6 2.2160 1.6658 2.5148
9 8 1.9217 0.5129 2.7670
10 7 2.4477 2.5367 3.5170
11 6 2.2288 2.1290 4.9071
12 1 2.4930 1.0779 5.0233
13 6 0.7561 2.3281 5.2711
14 6 3.1021 2.9797 5.8315
15 6 2.9574 2.6408 7.3217
16 7 4.0033 1.6232 7.1387
17 6 4.3432 0.4398 7.7379
18 1 3.7039 0.0165 8.4984
19 6 5.5094 -0.2157 7.3677
20 7 6.3478 0.3557 6.5293
21 14 5.8892 -1.9088 8.0597
22 1 6.7645 -1.7717 9.2513
23 1 4.6230 -2.5793 8.4500
24 1 6.5817 -2.7214 7.0275
25 6 4.5275 2.4393 6.0332
26 1 -0.3633 -1.0276 -0.0005
27 1 -0.3634 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 1.8933 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 2.9145 4.0765 -1.4156
32 1 3.0492 4.1928 1.2659
33 1 2.7594 3.4334 3.3180
34 1 0.4920 3.3792 5.1547
35 1 0.1340 1.7221 4.6124
36 1 0.5932 2.0244 6.3051
37 1 3.0581 4.0458 5.6091
38 1 1.9846 2.2218 7.5790
39 1 3.2542 3.4543 7.9835
40 1 7.1630 -0.1022 6.2709
41 1 5.2386 3.2003 6.3546
42 1 4.8923 1.8489 5.1928
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000969550532.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:20:09
Heat of formation + Delta-G solvation = 98.808421 kcal
Electronic energy + Delta-G solvation = -23810.390986 eV
Core-core repulsion = 20408.386520 eV
Total energy + Delta-G solvation = -3402.004466 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-42.54547 -39.58421 -38.14679 -35.04781 -34.27043 -32.27952 -31.37843 -29.85099
-29.62345 -27.61496 -25.00518 -24.25036 -23.87270 -23.02829 -21.89582 -20.87275
-19.97812 -18.88605 -17.53670 -16.70927 -16.26373 -16.12801 -15.57691 -14.95246
-14.83869 -14.62475 -14.16136 -13.90215 -13.81902 -13.55304 -13.10048 -12.98184
-12.66549 -12.55287 -12.20900 -12.06669 -11.85631 -11.41658 -11.36765 -10.92968
-10.85670 -10.80423 -10.71269 -10.35720 -9.96407 -9.81195 -9.74691 -9.26968
-9.20581 -9.08589 -8.82976 -8.70639 -6.86430 -5.76335 -3.07055 1.30441
2.35814 2.58560 3.33224 3.36053 3.41077 3.46444 3.48695 4.46079
4.48520 4.65479 4.85586 4.93429 5.10097 5.16396 5.18441 5.24556
5.32380 5.48040 5.50315 5.54350 5.65627 5.72493 5.76059 5.84732
5.91253 6.01392 6.08777 6.26594 6.41175 6.43300 6.52374 6.62731
6.66101 6.70305 6.84100 7.19364 7.28257 7.54976 7.63983 7.98704
8.03356 8.32481 9.05324 9.72556 10.66077 11.42323
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.017259 B = 0.004219 C = 0.003923
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1621.914774 B = 6635.677481 C = 7135.505668
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.108 3.892
3 N -0.254 5.254
4 N -0.283 5.283
5 C -0.006 4.006
6 C -0.193 4.193
7 C -0.029 4.029
8 C 0.588 3.412
9 O -0.537 6.537
10 N -0.701 5.701
11 C 0.171 3.829
12 H 0.106 0.894
13 C -0.157 4.157
14 C -0.157 4.157
15 C 0.126 3.874
16 N -0.607 5.607
17 C -0.219 4.219
18 H 0.081 0.919
19 C -0.005 4.005
20 N -0.919 5.919
21 Si 0.910 3.090
22 H -0.289 1.289
23 H -0.279 1.279
24 H -0.290 1.290
25 C 0.166 3.834
26 H 0.080 0.920
27 H 0.064 0.936
28 H 0.061 0.939
29 H 0.096 0.904
30 H 0.122 0.878
31 H 0.184 0.816
32 H 0.160 0.840
33 H 0.399 0.601
34 H 0.051 0.949
35 H 0.052 0.948
36 H 0.071 0.929
37 H 0.071 0.929
38 H 0.044 0.956
39 H 0.034 0.966
40 H 0.253 0.747
41 H 0.029 0.971
42 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.859 7.381 -12.315 18.002
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.012 4.012
3 N -0.042 5.042
4 N -0.116 5.116
5 C -0.182 4.182
6 C -0.222 4.222
7 C -0.158 4.158
8 C 0.373 3.627
9 O -0.414 6.414
10 N -0.351 5.351
11 C 0.068 3.932
12 H 0.124 0.876
13 C -0.216 4.216
14 C -0.177 4.177
15 C -0.001 4.001
16 N -0.333 5.333
17 C -0.346 4.346
18 H 0.099 0.901
19 C -0.202 4.202
20 N -0.565 5.565
21 Si 0.740 3.260
22 H -0.217 1.217
23 H -0.205 1.205
24 H -0.216 1.216
25 C 0.040 3.960
26 H 0.099 0.901
27 H 0.083 0.917
28 H 0.080 0.920
29 H 0.114 0.886
30 H 0.140 0.860
31 H 0.201 0.799
32 H 0.178 0.822
33 H 0.233 0.767
34 H 0.071 0.929
35 H 0.071 0.929
36 H 0.090 0.910
37 H 0.089 0.911
38 H 0.062 0.938
39 H 0.052 0.948
40 H 0.063 0.937
41 H 0.047 0.953
42 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -11.216 5.392 -12.958 17.966
hybrid contribution 0.905 0.273 0.980 1.361
sum -10.311 5.665 -11.978 16.789
Atomic orbital electron populations
1.22066 0.93587 1.03467 1.02851 1.22259 0.96093 0.76641 1.06215
1.45835 1.44378 1.12332 1.01698 1.73164 1.18715 1.05651 1.14032
1.23527 1.04685 0.95033 0.94976 1.22249 1.07431 0.96923 0.95611
1.21560 1.10439 0.93768 0.90034 1.16882 0.77554 0.85320 0.82932
1.90786 1.48707 1.17531 1.84362 1.45754 1.67221 1.15761 1.06367
1.20679 0.93725 1.01425 0.77367 0.87630 1.22138 0.96062 1.01119
1.02236 1.23324 1.00208 0.97432 0.96754 1.22417 0.93821 0.91875
0.91992 1.45717 1.31889 1.18569 1.37149 1.18927 1.04137 0.93970
1.17610 0.90144 1.24793 0.96235 0.99046 1.00146 1.69839 1.11866
1.37572 1.37272 0.86137 0.78034 0.83871 0.77973 1.21673 1.20454
1.21627 1.22047 0.90005 0.91827 0.92127 0.90090 0.91718 0.92022
0.88565 0.85978 0.79856 0.82235 0.76683 0.92944 0.92903 0.91040
0.91070 0.93795 0.94833 0.93699 0.95347 0.91962
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.65 10.24 37.15 0.38 -1.27 16
2 C 0.11 1.28 6.63 -4.05 -0.03 1.26 16
3 N -0.25 -3.52 3.35 -57.14 -0.19 -3.71 16
4 N -0.28 -3.80 11.90 30.59 0.36 -3.44 16
5 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16
6 C -0.19 -2.22 10.50 -38.98 -0.41 -2.63 16
7 C -0.03 -0.41 6.96 -82.06 -0.57 -0.98 16
8 C 0.59 9.47 7.76 -12.64 -0.10 9.37 16
9 O -0.54 -10.26 14.26 5.25 0.07 -10.19 16
10 N -0.70 -10.17 5.07 -54.96 -0.28 -10.45 16
11 C 0.17 2.87 2.47 -67.93 -0.17 2.70 16
12 H 0.11 2.30 7.29 -51.93 -0.38 1.92 16
13 C -0.16 -2.23 9.29 37.16 0.35 -1.89 16
14 C -0.16 -2.70 3.73 -89.97 -0.34 -3.04 16
15 C 0.13 2.45 8.08 -8.50 -0.07 2.38 16
16 N -0.61 -15.31 3.57 -184.58 -0.66 -15.97 16
17 C -0.22 -6.16 10.74 -15.06 -0.16 -6.32 16
18 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16
19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16
20 N -0.92 -27.69 11.79 55.49 0.65 -27.03 16
21 Si 0.91 22.53 29.56 -169.99 -5.02 17.51 16
22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
25 C 0.17 3.79 6.78 -8.37 -0.06 3.73 16
26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16
30 H 0.12 1.66 6.10 -51.93 -0.32 1.35 16
31 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16
32 H 0.16 1.34 7.58 -52.48 -0.40 0.95 16
33 H 0.40 4.59 7.64 -40.82 -0.31 4.28 16
34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.07 1.02 6.50 -51.93 -0.34 0.68 16
37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16
38 H 0.04 0.81 6.43 -51.93 -0.33 0.47 16
39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16
41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16
42 H 0.06 1.61 7.53 -51.93 -0.39 1.21 16
LS Contribution 348.05 15.07 5.25 5.25
Total: -1.00 -34.02 348.05 -7.53 -41.55
By element:
Atomic # 1 Polarization: 9.94 SS G_CDS: -6.24 Total: 3.70 kcal
Atomic # 6 Polarization: 4.27 SS G_CDS: -1.48 Total: 2.79 kcal
Atomic # 7 Polarization: -60.49 SS G_CDS: -0.11 Total: -60.60 kcal
Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal
Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -34.02 -7.53 -41.55 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000969550532.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.361 kcal
(2) G-P(sol) polarization free energy of solvation -34.020 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.341 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal
(6) G-S(sol) free energy of system = (1) + (5) 98.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds