Wall clock time and date at job start Tue Mar 31 2020 03:20:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46499 * 109.47055 * 2 1
4 4 N 1.28439 * 125.19219 * 272.11830 * 3 2 1
5 5 C 1.30862 * 110.92961 * 179.97438 * 4 3 2
6 6 C 1.39677 * 107.86026 * 359.77633 * 5 4 3
7 7 C 1.36596 * 125.19035 * 92.09798 * 3 2 1
8 8 C 1.47164 * 126.88358 * 359.97438 * 7 3 2
9 9 O 1.21633 * 120.00190 * 5.33904 * 8 7 3
10 10 N 1.34776 * 120.00267 * 185.33478 * 8 7 3
11 11 C 1.46504 * 120.00323 * 174.52200 * 10 8 7
12 12 H 1.09005 * 109.46684 * 35.00431 * 11 10 8
13 13 C 1.52999 * 109.47297 * 275.00389 * 11 10 8
14 14 C 1.52998 * 109.47025 * 155.00420 * 11 10 8
15 15 C 1.53503 * 114.20506 * 180.02562 * 14 11 10
16 16 N 1.47071 * 87.98693 * 87.51646 * 15 14 11
17 17 C 1.36934 * 136.05584 * 207.08186 * 16 15 14
18 18 H 1.07998 * 120.00105 * 6.21685 * 17 16 15
19 19 C 1.38808 * 119.99819 * 186.21556 * 17 16 15
20 20 N 1.31620 * 120.00074 * 6.03761 * 19 17 16
21 21 Si 1.86805 * 120.00196 * 186.03492 * 19 17 16
22 22 H 1.48491 * 109.47104 * 265.01196 * 21 19 17
23 23 H 1.48498 * 109.46663 * 25.01359 * 21 19 17
24 24 H 1.48499 * 109.46991 * 145.00871 * 21 19 17
25 25 C 1.47066 * 87.88366 * 27.34231 * 16 15 14
26 26 H 1.08998 * 109.47119 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47389 * 299.99762 * 1 2 3
28 28 H 1.09003 * 109.47483 * 59.99911 * 1 2 3
29 29 H 1.09002 * 109.46976 * 240.00240 * 2 1 3
30 30 H 1.09003 * 109.47483 * 120.00089 * 2 1 3
31 31 H 1.08002 * 126.07347 * 180.02562 * 5 4 3
32 32 H 1.08003 * 127.31780 * 180.26607 * 6 5 4
33 33 H 0.97000 * 120.00205 * 354.52788 * 10 8 7
34 34 H 1.08997 * 109.47083 * 300.00275 * 13 11 10
35 35 H 1.09003 * 109.46792 * 59.99743 * 13 11 10
36 36 H 1.09000 * 109.46865 * 179.97438 * 13 11 10
37 37 H 1.08999 * 113.41724 * 46.80146 * 14 11 10
38 38 H 1.08998 * 113.46394 * 332.73913 * 15 14 11
39 39 H 1.08992 * 113.51806 * 202.30829 * 15 14 11
40 40 H 0.97006 * 120.00285 * 179.97438 * 20 19 17
41 41 H 1.09000 * 113.46909 * 87.43398 * 25 16 15
42 42 H 1.08995 * 113.46956 * 217.87585 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0182 1.3812 0.0000
4 7 2.2284 2.0920 -1.0489
5 6 2.6619 3.2840 -0.7267
6 6 2.7344 3.3513 0.6665
7 6 2.3192 2.1098 1.1156
8 6 2.2160 1.6658 2.5148
9 8 1.9217 0.5129 2.7670
10 7 2.4477 2.5367 3.5170
11 6 2.2288 2.1290 4.9071
12 1 2.4930 1.0779 5.0233
13 6 0.7561 2.3281 5.2711
14 6 3.1021 2.9797 5.8315
15 6 2.9574 2.6408 7.3217
16 7 4.0033 1.6232 7.1387
17 6 4.3432 0.4398 7.7379
18 1 3.7039 0.0165 8.4984
19 6 5.5094 -0.2157 7.3677
20 7 6.3478 0.3557 6.5293
21 14 5.8892 -1.9088 8.0597
22 1 6.7645 -1.7717 9.2513
23 1 4.6230 -2.5793 8.4500
24 1 6.5817 -2.7214 7.0275
25 6 4.5275 2.4393 6.0332
26 1 -0.3633 -1.0276 -0.0005
27 1 -0.3634 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 1.8933 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 2.9145 4.0765 -1.4156
32 1 3.0492 4.1928 1.2659
33 1 2.7594 3.4334 3.3180
34 1 0.4920 3.3792 5.1547
35 1 0.1340 1.7221 4.6124
36 1 0.5932 2.0244 6.3051
37 1 3.0581 4.0458 5.6091
38 1 1.9846 2.2218 7.5790
39 1 3.2542 3.4543 7.9835
40 1 7.1630 -0.1022 6.2709
41 1 5.2386 3.2003 6.3546
42 1 4.8923 1.8489 5.1928
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000969550532.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:20:09
Heat of formation + Delta-G solvation = 75.031666 kcal
Electronic energy + Delta-G solvation = -23811.422024 eV
Core-core repulsion = 20408.386520 eV
Total energy + Delta-G solvation = -3403.035503 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-43.51083 -40.97261 -39.68213 -36.32174 -35.35022 -34.22734 -32.64705 -30.87791
-30.71027 -29.47231 -26.56674 -25.67454 -25.15531 -24.33898 -23.13988 -22.07756
-21.23029 -20.23121 -18.90307 -18.49351 -17.55356 -17.25456 -16.89342 -16.67086
-16.06338 -15.76567 -15.62873 -15.36964 -14.96288 -14.74363 -14.57677 -14.35412
-13.97566 -13.56662 -13.46376 -13.29845 -13.23015 -13.01945 -12.82017 -12.53326
-12.39996 -12.27796 -12.04023 -11.82087 -11.77137 -11.50480 -11.16749 -10.92966
-10.83974 -10.35233 -10.05192 -9.94873 -8.89174 -7.93228 -5.22637 0.24593
1.38301 1.41462 1.43877 1.52388 1.68433 2.16821 2.21382 2.46524
3.31368 3.48564 3.56121 3.57248 3.72047 3.89597 3.98341 4.09544
4.21600 4.29374 4.43463 4.49372 4.61107 4.66898 4.71153 4.78554
4.81292 4.84726 4.89687 4.90198 5.02800 5.05981 5.18453 5.25730
5.32332 5.45948 5.52359 5.57901 5.70388 5.76591 5.94056 6.47404
6.91237 7.07320 7.16537 7.61321 8.62864 9.25957
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.017259 B = 0.004219 C = 0.003923
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1621.914774 B = 6635.677481 C = 7135.505668
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.103 3.897
3 N -0.266 5.266
4 N -0.300 5.300
5 C -0.005 4.005
6 C -0.176 4.176
7 C -0.060 4.060
8 C 0.585 3.415
9 O -0.578 6.578
10 N -0.689 5.689
11 C 0.178 3.822
12 H 0.047 0.953
13 C -0.146 4.146
14 C -0.119 4.119
15 C 0.125 3.875
16 N -0.641 5.641
17 C -0.224 4.224
18 H 0.084 0.916
19 C -0.068 4.068
20 N -0.954 5.954
21 Si 0.971 3.029
22 H -0.283 1.283
23 H -0.267 1.267
24 H -0.298 1.298
25 C 0.160 3.840
26 H 0.099 0.901
27 H 0.045 0.955
28 H 0.067 0.933
29 H 0.112 0.888
30 H 0.098 0.902
31 H 0.221 0.779
32 H 0.193 0.807
33 H 0.416 0.584
34 H 0.086 0.914
35 H 0.043 0.957
36 H 0.070 0.930
37 H 0.123 0.877
38 H 0.058 0.942
39 H 0.054 0.946
40 H 0.245 0.755
41 H 0.021 0.979
42 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.233 9.632 -12.788 20.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.017 4.017
3 N -0.055 5.055
4 N -0.132 5.132
5 C -0.180 4.180
6 C -0.205 4.205
7 C -0.188 4.188
8 C 0.371 3.629
9 O -0.458 6.458
10 N -0.341 5.341
11 C 0.073 3.927
12 H 0.065 0.935
13 C -0.204 4.204
14 C -0.139 4.139
15 C 0.000 4.000
16 N -0.368 5.368
17 C -0.352 4.352
18 H 0.102 0.898
19 C -0.261 4.261
20 N -0.603 5.603
21 Si 0.800 3.200
22 H -0.210 1.210
23 H -0.192 1.192
24 H -0.225 1.225
25 C 0.035 3.965
26 H 0.118 0.882
27 H 0.064 0.936
28 H 0.086 0.914
29 H 0.130 0.870
30 H 0.116 0.884
31 H 0.238 0.762
32 H 0.210 0.790
33 H 0.254 0.746
34 H 0.105 0.895
35 H 0.062 0.938
36 H 0.089 0.911
37 H 0.141 0.859
38 H 0.077 0.923
39 H 0.071 0.929
40 H 0.054 0.946
41 H 0.039 0.961
42 H 0.039 0.961
Dipole moment (debyes) X Y Z Total
from point charges -12.622 7.696 -13.414 19.962
hybrid contribution 1.315 -0.359 1.093 1.747
sum -11.307 7.337 -12.322 18.262
Atomic orbital electron populations
1.21992 0.92313 1.04509 1.02089 1.22302 0.97163 0.76426 1.05766
1.46000 1.44956 1.12785 1.01722 1.73160 1.19288 1.06672 1.14122
1.24217 1.03234 0.94994 0.95576 1.22717 1.05209 0.96467 0.96108
1.21507 1.12882 0.95274 0.89124 1.17220 0.76791 0.84841 0.84050
1.90766 1.50622 1.19329 1.85105 1.45552 1.66870 1.16383 1.05246
1.20400 0.95494 0.98171 0.78587 0.93467 1.22035 0.93434 1.03158
1.01821 1.23089 0.95428 0.99891 0.95445 1.22639 0.92804 0.90776
0.93794 1.46068 1.33537 1.19199 1.37981 1.19328 1.03697 0.95440
1.16753 0.89806 1.25583 0.96651 1.02628 1.01238 1.70016 1.12200
1.38889 1.39235 0.85162 0.78046 0.79784 0.77048 1.21037 1.19194
1.22538 1.22045 0.93139 0.91073 0.90291 0.88210 0.93607 0.91365
0.86954 0.88380 0.76225 0.78969 0.74586 0.89482 0.93809 0.91105
0.85918 0.92342 0.92883 0.94568 0.96077 0.96134
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.08 10.24 71.98 0.74 -2.35 16
2 C 0.10 2.52 6.63 86.38 0.57 3.09 16
3 N -0.27 -7.28 3.35 -334.70 -1.12 -8.40 16
4 N -0.30 -7.60 11.90 -57.14 -0.68 -8.28 16
5 C 0.00 -0.10 12.03 85.19 1.02 0.93 16
6 C -0.18 -3.57 10.50 22.66 0.24 -3.33 16
7 C -0.06 -1.65 6.96 40.79 0.28 -1.37 16
8 C 0.58 19.05 7.76 86.59 0.67 19.72 16
9 O -0.58 -23.34 14.26 -4.13 -0.06 -23.40 16
10 N -0.69 -19.25 5.07 -446.04 -2.26 -21.51 16
11 C 0.18 5.82 2.47 44.99 0.11 5.93 16
12 H 0.05 2.14 7.29 -2.38 -0.02 2.12 16
13 C -0.15 -3.83 9.29 71.98 0.67 -3.17 16
14 C -0.12 -3.83 3.73 -10.37 -0.04 -3.87 16
15 C 0.13 4.62 8.08 83.18 0.67 5.29 16
16 N -0.64 -32.59 3.57 -737.89 -2.63 -35.22 16
17 C -0.22 -12.80 10.74 84.03 0.90 -11.90 16
18 H 0.08 4.58 7.84 -2.91 -0.02 4.56 16
19 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16
20 N -0.95 -59.75 11.79 21.65 0.26 -59.50 16
21 Si 0.97 47.54 29.56 68.60 2.03 49.56 16
22 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16
23 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16
24 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16
25 C 0.16 7.40 6.78 83.27 0.56 7.96 16
26 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16
27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16
28 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16
29 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16
30 H 0.10 2.88 6.10 -2.39 -0.01 2.87 16
31 H 0.22 2.45 8.06 -2.91 -0.02 2.43 16
32 H 0.19 2.42 7.58 -2.91 -0.02 2.39 16
33 H 0.42 8.42 7.64 -92.71 -0.71 7.71 16
34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
36 H 0.07 1.87 6.50 -2.39 -0.02 1.85 16
37 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16
38 H 0.06 2.00 6.43 -2.39 -0.02 1.98 16
39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
40 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16
41 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16
42 H 0.02 1.10 7.53 -2.39 -0.02 1.08 16
Total: -1.00 -78.78 348.05 2.72 -76.06
By element:
Atomic # 1 Polarization: 16.96 SS G_CDS: 0.32 Total: 17.28 kcal
Atomic # 6 Polarization: 6.52 SS G_CDS: 6.87 Total: 13.40 kcal
Atomic # 7 Polarization: -126.47 SS G_CDS: -6.44 Total: -132.90 kcal
Atomic # 8 Polarization: -23.34 SS G_CDS: -0.06 Total: -23.40 kcal
Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal
Total: -78.78 2.72 -76.06 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000969550532.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 151.093 kcal
(2) G-P(sol) polarization free energy of solvation -78.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.309 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.061 kcal
(6) G-S(sol) free energy of system = (1) + (5) 75.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds