Wall clock time and date at job start Tue Mar 31 2020 02:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35362 * 127.24917 * 2 1 4 4 N 1.35035 * 107.22841 * 180.02562 * 3 2 1 5 5 C 1.46504 * 124.88493 * 180.02562 * 4 3 2 6 6 N 1.28463 * 110.23266 * 359.74262 * 4 3 2 7 7 C 1.31811 * 110.07502 * 0.42442 * 6 4 3 8 8 C 1.47709 * 126.52233 * 179.85171 * 7 6 4 9 9 O 1.21573 * 120.00039 * 179.68426 * 8 7 6 10 10 N 1.34780 * 119.99783 * 359.69003 * 8 7 6 11 11 C 1.46496 * 119.99589 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47499 * 34.99519 * 11 10 8 13 13 C 1.53011 * 109.47036 * 274.99648 * 11 10 8 14 14 C 1.53002 * 109.46844 * 155.00023 * 11 10 8 15 15 C 1.53939 * 113.73909 * 278.73434 * 14 11 10 16 16 N 1.47816 * 86.03954 * 222.08461 * 15 14 11 17 17 C 1.36933 * 134.46147 * 204.64304 * 16 15 14 18 18 H 1.07992 * 120.00471 * 173.34844 * 17 16 15 19 19 C 1.38814 * 119.99601 * 353.35203 * 17 16 15 20 20 N 1.31619 * 120.00226 * 5.06525 * 19 17 16 21 21 Si 1.86799 * 119.99753 * 185.05828 * 19 17 16 22 22 H 1.48504 * 109.47072 * 94.98999 * 21 19 17 23 23 H 1.48499 * 109.47204 * 214.98735 * 21 19 17 24 24 H 1.48500 * 109.47496 * 334.99149 * 21 19 17 25 25 C 1.47579 * 91.04536 * 24.55153 * 16 15 14 26 26 H 1.08997 * 109.47125 * 269.97315 * 1 2 3 27 27 H 1.08997 * 109.47347 * 29.97776 * 1 2 3 28 28 H 1.09003 * 109.47216 * 149.97771 * 1 2 3 29 29 H 1.08003 * 126.38347 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.47023 * 89.99438 * 5 4 3 31 31 H 1.08993 * 109.47127 * 209.99721 * 5 4 3 32 32 H 1.09003 * 109.46767 * 329.99810 * 5 4 3 33 33 H 0.96994 * 119.99565 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.46871 * 300.00255 * 13 11 10 35 35 H 1.09002 * 109.47073 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.46722 * 59.99889 * 13 11 10 37 37 H 1.08996 * 112.94566 * 50.32906 * 14 11 10 38 38 H 1.08994 * 113.77395 * 336.35073 * 15 14 11 39 39 H 1.09001 * 113.76712 * 107.74781 * 15 14 11 40 40 H 0.97002 * 119.99772 * 180.02562 * 20 19 17 41 41 H 1.09005 * 113.77142 * 221.14971 * 25 16 15 42 42 H 1.09004 * 113.87500 * 89.76822 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 -0.0006 5 6 4.7938 1.4575 -0.0002 6 7 3.5998 -0.6694 0.0045 7 6 2.3635 -1.1265 -0.0005 8 6 1.9506 -2.5447 -0.0003 9 8 0.7697 -2.8340 0.0005 10 7 2.8829 -3.5180 -0.0009 11 6 2.4733 -4.9245 -0.0001 12 1 1.5629 -5.0382 -0.5886 13 6 2.2114 -5.3786 1.4374 14 6 3.5854 -5.7798 -0.6105 15 6 3.5880 -5.7864 -2.1499 16 7 3.8543 -7.2363 -2.0411 17 6 4.4405 -8.1676 -2.8560 18 1 4.6121 -9.1705 -2.4940 19 6 4.8142 -7.8225 -4.1476 20 7 4.6974 -6.5768 -4.5559 21 14 5.4832 -9.1263 -5.3061 22 1 4.3789 -9.6555 -6.1464 23 1 6.5247 -8.5263 -6.1781 24 1 6.0775 -10.2336 -4.5151 25 6 3.2371 -7.2766 -0.7012 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 2.0220 2.1138 -0.0004 30 1 5.0912 1.6657 1.0275 31 1 5.6026 0.9385 -0.5145 32 1 4.5792 2.3949 -0.5134 33 1 3.8249 -3.2871 -0.0018 34 1 3.1217 -5.2649 2.0259 35 1 1.9070 -6.4253 1.4380 36 1 1.4191 -4.7692 1.8722 37 1 4.5630 -5.5826 -0.1708 38 1 2.6203 -5.5495 -2.5919 39 1 4.4084 -5.2197 -2.5902 40 1 4.9582 -6.3358 -5.4586 41 1 3.7779 -7.8976 0.0132 42 1 2.1660 -7.4785 -0.7147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969654221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:49 Heat of formation + Delta-G solvation = 94.343045 kcal Electronic energy + Delta-G solvation = -23247.496308 eV Core-core repulsion = 19845.298209 eV Total energy + Delta-G solvation = -3402.198099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.72464 -39.42914 -37.88211 -34.73312 -33.97492 -32.35925 -31.86196 -30.26948 -28.26410 -27.44711 -26.64673 -24.77666 -23.94882 -22.76657 -21.12499 -20.57686 -19.98549 -18.93445 -17.49845 -16.68069 -16.43991 -16.29312 -15.87131 -14.83412 -14.55641 -14.29091 -13.87561 -13.69419 -13.54904 -13.41835 -13.22479 -12.90752 -12.75010 -12.55886 -12.34850 -12.10394 -12.00691 -11.58144 -11.25072 -11.21991 -10.86316 -10.82236 -10.67708 -10.27078 -9.94668 -9.70311 -9.64713 -9.32698 -9.31943 -8.84526 -8.73418 -8.61179 -6.79775 -5.72372 -3.03420 1.61233 2.04665 2.33420 3.42375 3.44276 3.47759 3.49555 3.61320 4.21402 4.50453 4.61423 4.75044 4.80559 5.04296 5.12414 5.19417 5.29432 5.34798 5.39647 5.48734 5.60598 5.75922 5.77174 5.89817 5.93925 6.04061 6.12698 6.15679 6.32754 6.42350 6.47689 6.51202 6.65025 6.68715 6.76987 6.92375 7.31439 7.43808 7.63476 7.68057 7.96533 8.03567 8.49671 9.09999 9.76386 10.67551 11.45326 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.003494 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.786063 B = 8010.871864 C = 8735.008505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.146 4.146 3 C -0.028 4.028 4 N -0.286 5.286 5 C 0.088 3.912 6 N -0.259 5.259 7 C -0.012 4.012 8 C 0.603 3.397 9 O -0.536 6.536 10 N -0.704 5.704 11 C 0.151 3.849 12 H 0.089 0.911 13 C -0.158 4.158 14 C -0.147 4.147 15 C 0.174 3.826 16 N -0.613 5.613 17 C -0.223 4.223 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.130 3.870 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.179 0.821 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.405 0.595 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.028 0.972 39 H 0.067 0.933 40 H 0.253 0.747 41 H 0.043 0.957 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.679 18.420 12.517 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C -0.170 4.170 4 N -0.074 5.074 5 C -0.052 4.052 6 N -0.095 5.095 7 C -0.173 4.173 8 C 0.387 3.613 9 O -0.411 6.411 10 N -0.354 5.354 11 C 0.046 3.954 12 H 0.107 0.893 13 C -0.216 4.216 14 C -0.167 4.167 15 C 0.049 3.951 16 N -0.339 5.339 17 C -0.351 4.351 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.004 3.996 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.196 0.804 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.239 0.761 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.124 17.797 12.214 21.689 hybrid contribution 0.131 -0.105 -0.799 0.816 sum -1.992 17.692 11.415 21.149 Atomic orbital electron populations 1.20167 0.88122 1.03089 1.02205 1.20397 0.97488 0.90494 1.07267 1.22580 0.83752 1.00433 1.10275 1.45253 1.07019 1.03803 1.51333 1.22158 0.84984 0.93796 1.04299 1.73528 1.23338 0.93653 1.18951 1.21965 0.89351 0.95282 1.10681 1.16858 0.85572 0.82487 0.76344 1.90747 1.16875 1.82645 1.50870 1.45953 1.09820 1.06099 1.73528 1.21123 0.99073 0.78704 0.96493 0.89314 1.22134 1.01405 1.01630 0.96450 1.23823 0.97206 0.95857 0.99802 1.22228 0.98649 0.85866 0.88396 1.45986 1.65908 1.05924 1.16120 1.19033 1.31420 0.91853 0.92798 0.90248 1.24817 1.01990 0.96614 0.96984 1.69846 1.53171 1.15742 1.17827 0.86149 0.78129 0.80730 0.81090 1.21652 1.21764 1.20570 1.22496 0.96009 0.92305 0.88824 0.91622 0.92192 0.89728 0.80354 0.89841 0.88381 0.88723 0.76061 0.92786 0.91392 0.92712 0.89436 0.95392 0.91511 0.93705 0.93836 0.94714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.93 36.01 0.36 -0.52 16 2 C -0.15 -1.87 6.25 -104.40 -0.65 -2.52 16 3 C -0.03 -0.27 11.40 -17.17 -0.20 -0.47 16 4 N -0.29 -2.96 3.70 -68.12 -0.25 -3.21 16 5 C 0.09 0.46 11.31 59.85 0.68 1.14 16 6 N -0.26 -3.55 11.67 33.42 0.39 -3.16 16 7 C -0.01 -0.19 7.13 -82.76 -0.59 -0.78 16 8 C 0.60 10.20 7.79 -12.39 -0.10 10.10 16 9 O -0.54 -10.16 14.78 5.30 0.08 -10.08 16 10 N -0.70 -11.24 5.07 -54.79 -0.28 -11.52 16 11 C 0.15 2.51 2.38 -67.93 -0.16 2.35 16 12 H 0.09 1.67 7.41 -51.93 -0.39 1.28 16 13 C -0.16 -2.25 9.31 37.16 0.35 -1.91 16 14 C -0.15 -2.78 3.47 -89.70 -0.31 -3.09 16 15 C 0.17 4.23 6.99 -2.84 -0.02 4.21 16 16 N -0.61 -16.21 3.70 -177.69 -0.66 -16.87 16 17 C -0.22 -6.45 10.70 -15.06 -0.16 -6.61 16 18 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -28.03 11.51 55.49 0.64 -27.40 16 21 Si 0.91 22.60 29.56 -169.99 -5.02 17.57 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.13 2.71 7.64 -2.97 -0.02 2.68 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.15 6.72 -51.93 -0.35 0.80 16 29 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.24 8.13 -51.93 -0.42 -0.18 16 33 H 0.40 6.03 8.33 -40.82 -0.34 5.69 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.03 0.72 7.99 -51.93 -0.41 0.31 16 39 H 0.07 1.79 7.37 -51.93 -0.38 1.40 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -35.70 351.99 -7.18 -42.88 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.46 Total: 2.21 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -0.93 Total: 4.28 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.16 Total: -62.16 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.70 -7.18 -42.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969654221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.221 kcal (2) G-P(sol) polarization free energy of solvation -35.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds