Wall clock time and date at job start Tue Mar 31 2020 02:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35362 * 127.24917 * 2 1 4 4 N 1.35035 * 107.22841 * 180.02562 * 3 2 1 5 5 C 1.46504 * 124.88493 * 180.02562 * 4 3 2 6 6 N 1.28463 * 110.23266 * 359.74262 * 4 3 2 7 7 C 1.31811 * 110.07502 * 0.42442 * 6 4 3 8 8 C 1.47709 * 126.52233 * 179.85171 * 7 6 4 9 9 O 1.21573 * 120.00039 * 179.68426 * 8 7 6 10 10 N 1.34780 * 119.99783 * 359.69003 * 8 7 6 11 11 C 1.46496 * 119.99589 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47499 * 34.99519 * 11 10 8 13 13 C 1.53011 * 109.47036 * 274.99648 * 11 10 8 14 14 C 1.53002 * 109.46844 * 155.00023 * 11 10 8 15 15 C 1.53939 * 113.73909 * 278.73434 * 14 11 10 16 16 N 1.47816 * 86.03954 * 222.08461 * 15 14 11 17 17 C 1.36933 * 134.46147 * 204.64304 * 16 15 14 18 18 H 1.07992 * 120.00471 * 173.34844 * 17 16 15 19 19 C 1.38814 * 119.99601 * 353.35203 * 17 16 15 20 20 N 1.31619 * 120.00226 * 5.06525 * 19 17 16 21 21 Si 1.86799 * 119.99753 * 185.05828 * 19 17 16 22 22 H 1.48504 * 109.47072 * 94.98999 * 21 19 17 23 23 H 1.48499 * 109.47204 * 214.98735 * 21 19 17 24 24 H 1.48500 * 109.47496 * 334.99149 * 21 19 17 25 25 C 1.47579 * 91.04536 * 24.55153 * 16 15 14 26 26 H 1.08997 * 109.47125 * 269.97315 * 1 2 3 27 27 H 1.08997 * 109.47347 * 29.97776 * 1 2 3 28 28 H 1.09003 * 109.47216 * 149.97771 * 1 2 3 29 29 H 1.08003 * 126.38347 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.47023 * 89.99438 * 5 4 3 31 31 H 1.08993 * 109.47127 * 209.99721 * 5 4 3 32 32 H 1.09003 * 109.46767 * 329.99810 * 5 4 3 33 33 H 0.96994 * 119.99565 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.46871 * 300.00255 * 13 11 10 35 35 H 1.09002 * 109.47073 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.46722 * 59.99889 * 13 11 10 37 37 H 1.08996 * 112.94566 * 50.32906 * 14 11 10 38 38 H 1.08994 * 113.77395 * 336.35073 * 15 14 11 39 39 H 1.09001 * 113.76712 * 107.74781 * 15 14 11 40 40 H 0.97002 * 119.99772 * 180.02562 * 20 19 17 41 41 H 1.09005 * 113.77142 * 221.14971 * 25 16 15 42 42 H 1.09004 * 113.87500 * 89.76822 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 -0.0006 5 6 4.7938 1.4575 -0.0002 6 7 3.5998 -0.6694 0.0045 7 6 2.3635 -1.1265 -0.0005 8 6 1.9506 -2.5447 -0.0003 9 8 0.7697 -2.8340 0.0005 10 7 2.8829 -3.5180 -0.0009 11 6 2.4733 -4.9245 -0.0001 12 1 1.5629 -5.0382 -0.5886 13 6 2.2114 -5.3786 1.4374 14 6 3.5854 -5.7798 -0.6105 15 6 3.5880 -5.7864 -2.1499 16 7 3.8543 -7.2363 -2.0411 17 6 4.4405 -8.1676 -2.8560 18 1 4.6121 -9.1705 -2.4940 19 6 4.8142 -7.8225 -4.1476 20 7 4.6974 -6.5768 -4.5559 21 14 5.4832 -9.1263 -5.3061 22 1 4.3789 -9.6555 -6.1464 23 1 6.5247 -8.5263 -6.1781 24 1 6.0775 -10.2336 -4.5151 25 6 3.2371 -7.2766 -0.7012 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 2.0220 2.1138 -0.0004 30 1 5.0912 1.6657 1.0275 31 1 5.6026 0.9385 -0.5145 32 1 4.5792 2.3949 -0.5134 33 1 3.8249 -3.2871 -0.0018 34 1 3.1217 -5.2649 2.0259 35 1 1.9070 -6.4253 1.4380 36 1 1.4191 -4.7692 1.8722 37 1 4.5630 -5.5826 -0.1708 38 1 2.6203 -5.5495 -2.5919 39 1 4.4084 -5.2197 -2.5902 40 1 4.9582 -6.3358 -5.4586 41 1 3.7779 -7.8976 0.0132 42 1 2.1660 -7.4785 -0.7147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969654221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:48 Heat of formation + Delta-G solvation = 69.008806 kcal Electronic energy + Delta-G solvation = -23248.594883 eV Core-core repulsion = 19845.298209 eV Total energy + Delta-G solvation = -3403.296674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.59936 -40.84950 -39.54114 -36.21122 -34.79779 -34.21479 -33.00768 -31.60891 -29.38743 -28.98045 -27.59050 -26.53129 -25.64193 -24.02226 -22.48533 -21.56799 -21.30776 -20.43698 -18.78264 -18.50443 -17.37572 -17.26248 -17.16499 -16.89717 -15.79789 -15.75043 -15.58225 -14.84963 -14.68327 -14.52815 -14.24490 -14.06880 -13.99666 -13.44078 -13.31487 -13.30907 -13.19733 -13.09109 -12.99889 -12.89055 -12.70073 -12.52772 -11.99867 -11.78680 -11.72391 -11.51555 -11.27998 -10.96235 -10.87682 -10.26165 -9.99688 -9.64178 -8.92190 -7.92538 -5.25654 0.56644 1.19118 1.43843 1.46749 1.55503 1.64710 2.22686 2.41059 2.46842 3.27715 3.35729 3.41932 3.74006 3.91199 3.93310 4.08988 4.29516 4.38721 4.44097 4.47958 4.52279 4.58425 4.62523 4.72308 4.73919 4.83349 4.86401 4.92766 5.00541 5.06773 5.10843 5.23205 5.24262 5.33574 5.46924 5.54294 5.56137 5.65228 5.91567 5.95558 6.50110 6.89923 6.94281 7.22945 7.59696 8.56642 9.25389 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.003494 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.786063 B = 8010.871864 C = 8735.008505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.175 4.175 3 C -0.005 4.005 4 N -0.279 5.279 5 C 0.076 3.924 6 N -0.280 5.280 7 C -0.050 4.050 8 C 0.598 3.402 9 O -0.566 6.566 10 N -0.702 5.702 11 C 0.159 3.841 12 H 0.064 0.936 13 C -0.148 4.148 14 C -0.111 4.111 15 C 0.171 3.829 16 N -0.644 5.644 17 C -0.237 4.237 18 H 0.088 0.912 19 C -0.069 4.069 20 N -0.955 5.955 21 Si 0.979 3.021 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.263 1.263 25 C 0.132 3.868 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.227 0.773 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.410 0.590 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.004 0.996 39 H 0.034 0.966 40 H 0.248 0.752 41 H 0.067 0.933 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 19.690 13.981 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.186 4.186 3 C -0.148 4.148 4 N -0.067 5.067 5 C -0.062 4.062 6 N -0.118 5.118 7 C -0.208 4.208 8 C 0.384 3.616 9 O -0.444 6.444 10 N -0.352 5.352 11 C 0.054 3.946 12 H 0.082 0.918 13 C -0.206 4.206 14 C -0.131 4.131 15 C 0.045 3.955 16 N -0.371 5.371 17 C -0.365 4.365 18 H 0.105 0.895 19 C -0.262 4.262 20 N -0.604 5.604 21 Si 0.807 3.193 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.187 1.187 25 C 0.007 3.993 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.244 0.756 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.120 0.880 38 H 0.021 0.979 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.348 19.051 13.722 23.517 hybrid contribution -0.074 -0.387 -1.231 1.293 sum -1.422 18.664 12.491 22.503 Atomic orbital electron populations 1.20114 0.87661 1.02856 1.02416 1.20736 0.98304 0.90807 1.08715 1.23218 0.82766 1.01662 1.07202 1.45810 1.08822 1.03112 1.48985 1.22627 0.83249 0.94204 1.06144 1.73459 1.22791 0.95658 1.19847 1.21826 0.90766 0.94697 1.13508 1.17216 0.85188 0.83590 0.75583 1.90715 1.17987 1.83383 1.52324 1.45899 1.10078 1.05741 1.73475 1.20916 0.96878 0.79021 0.97785 0.91824 1.22044 1.02174 1.02085 0.94289 1.23458 0.98650 0.95377 0.95578 1.22084 0.96045 0.85144 0.92177 1.46403 1.66434 1.06353 1.17872 1.19496 1.30928 0.92619 0.93477 0.89465 1.25709 1.03097 0.98660 0.98737 1.70051 1.54829 1.17773 1.17764 0.85047 0.77180 0.78386 0.78677 1.21661 1.22043 1.18733 1.22678 0.96468 0.93622 0.86491 0.91192 0.89344 0.92940 0.75619 0.87844 0.88731 0.85202 0.75462 0.91025 0.90216 0.93053 0.88003 0.97853 0.94728 0.94348 0.91468 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 9.93 71.24 0.71 -0.91 16 2 C -0.18 -4.35 6.25 -19.72 -0.12 -4.47 16 3 C -0.01 -0.09 11.40 83.54 0.95 0.86 16 4 N -0.28 -5.12 3.70 -369.44 -1.37 -6.49 16 5 C 0.08 0.55 11.31 127.77 1.44 2.00 16 6 N -0.28 -7.54 11.67 -48.17 -0.56 -8.10 16 7 C -0.05 -1.53 7.13 42.46 0.30 -1.23 16 8 C 0.60 21.06 7.79 86.75 0.68 21.74 16 9 O -0.57 -22.61 14.78 -3.95 -0.06 -22.67 16 10 N -0.70 -22.98 5.07 -445.51 -2.26 -25.24 16 11 C 0.16 5.34 2.38 45.00 0.11 5.44 16 12 H 0.06 2.49 7.41 -2.39 -0.02 2.47 16 13 C -0.15 -4.01 9.31 71.99 0.67 -3.34 16 14 C -0.11 -4.18 3.47 -10.14 -0.04 -4.22 16 15 C 0.17 8.68 6.99 86.44 0.60 9.28 16 16 N -0.64 -34.48 3.70 -716.09 -2.65 -37.13 16 17 C -0.24 -13.77 10.70 84.03 0.90 -12.87 16 18 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 19 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 20 N -0.96 -60.25 11.51 21.65 0.25 -60.00 16 21 Si 0.98 47.03 29.56 68.60 2.03 49.05 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 25 C 0.13 5.38 7.64 86.49 0.66 6.04 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.50 6.72 -2.39 -0.02 1.48 16 29 H 0.23 1.36 8.06 -2.91 -0.02 1.33 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.13 0.06 8.13 -2.39 -0.02 0.04 16 33 H 0.41 12.46 8.33 -92.71 -0.77 11.68 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.98 7.52 -2.39 -0.02 1.96 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 3.59 8.14 -2.39 -0.02 3.58 16 38 H 0.00 0.20 7.99 -2.39 -0.02 0.18 16 39 H 0.03 1.95 7.37 -2.39 -0.02 1.93 16 40 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.05 1.78 8.10 -2.38 -0.02 1.77 16 Total: -1.00 -81.35 351.99 2.96 -78.39 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.25 Total: 17.48 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 7.33 Total: 14.71 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -6.59 Total: -136.96 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.06 Total: -22.67 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -81.35 2.96 -78.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969654221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.395 kcal (2) G-P(sol) polarization free energy of solvation -81.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds