Wall clock time and date at job start Tue Mar 31 2020 03:18:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 N 1.46501 * 109.47341 * 2 1
4 4 C 1.34948 * 126.03324 * 124.99925 * 3 2 1
5 5 C 1.35319 * 107.73994 * 180.02562 * 4 3 2
6 6 C 1.50707 * 126.03759 * 180.02562 * 5 4 3
7 7 C 1.50697 * 109.46941 * 90.00096 * 6 5 4
8 8 O 1.21277 * 120.00217 * 359.97438 * 7 6 5
9 9 N 1.34774 * 119.99872 * 179.97438 * 7 6 5
10 10 C 1.47434 * 125.64804 * 359.97438 * 9 7 6
11 11 C 1.54904 * 104.83221 * 155.91720 * 10 9 7
12 12 C 1.55160 * 101.58416 * 37.00719 * 11 10 9
13 13 H 1.09000 * 110.71813 * 83.04135 * 12 11 10
14 14 N 1.46496 * 110.71990 * 206.13427 * 12 11 10
15 15 C 1.36939 * 120.00077 * 273.54634 * 14 12 11
16 16 H 1.07997 * 119.99728 * 359.72656 * 15 14 12
17 17 C 1.38815 * 119.99845 * 180.02562 * 15 14 12
18 18 N 1.31619 * 119.99884 * 359.72042 * 17 15 14
19 19 Si 1.86798 * 119.99660 * 179.72678 * 17 15 14
20 20 H 1.48498 * 109.47416 * 59.99578 * 19 17 15
21 21 H 1.48508 * 109.46609 * 179.97438 * 19 17 15
22 22 H 1.48503 * 109.46903 * 299.99163 * 19 17 15
23 23 C 1.47023 * 125.64927 * 180.02562 * 9 7 6
24 24 C 1.39872 * 107.92411 * 0.26586 * 5 4 3
25 25 N 1.30839 * 108.19791 * 359.55119 * 24 5 4
26 26 H 1.08994 * 109.47247 * 59.99720 * 1 2 3
27 27 H 1.09001 * 109.47569 * 180.02562 * 1 2 3
28 28 H 1.09014 * 109.47180 * 300.00263 * 1 2 3
29 29 H 1.09003 * 109.46715 * 239.99630 * 2 1 3
30 30 H 1.09001 * 109.46953 * 120.00078 * 2 1 3
31 31 H 1.07992 * 126.13068 * 0.04428 * 4 3 2
32 32 H 1.08999 * 109.46684 * 329.99967 * 6 5 4
33 33 H 1.09002 * 109.46677 * 210.00300 * 6 5 4
34 34 H 1.08995 * 110.36490 * 37.07482 * 10 9 7
35 35 H 1.09000 * 110.46055 * 274.80167 * 10 9 7
36 36 H 1.09008 * 111.00525 * 278.93707 * 11 10 9
37 37 H 1.08994 * 111.04107 * 155.09646 * 11 10 9
38 38 H 0.97004 * 120.00009 * 93.55251 * 14 12 11
39 39 H 0.97000 * 119.99517 * 180.02562 * 18 17 15
40 40 H 1.08998 * 109.88202 * 61.59698 * 23 9 7
41 41 H 1.09004 * 109.88287 * 300.43103 * 23 9 7
42 42 H 1.07998 * 125.89968 * 179.73835 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.8731 1.9210 0.8939
5 6 3.0713 3.2136 0.5463
6 6 3.9549 4.1998 1.2660
7 6 5.3463 4.1410 0.6901
8 8 5.5960 3.3736 -0.2152
9 7 6.3132 4.9413 1.1811
10 6 6.1485 5.9166 2.2744
11 6 7.5705 6.0986 2.8610
12 6 8.4465 6.0267 1.5824
13 1 8.4809 6.9953 1.0836
14 7 9.7984 5.5641 1.9057
15 6 10.7539 6.4628 2.2991
16 1 10.5119 7.5132 2.3667
17 6 12.0350 6.0245 2.6049
18 7 12.3299 4.7444 2.5220
19 14 13.3404 7.2514 3.1341
20 1 12.8949 7.9468 4.3683
21 1 14.6133 6.5350 3.4020
22 1 13.5506 8.2476 2.0530
23 6 7.7066 4.9871 0.7145
24 6 2.3069 3.4744 -0.5956
25 7 1.6801 2.3749 -0.9276
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8901
29 1 1.8932 -0.5139 -0.8900
30 1 1.8933 -0.5139 0.8900
31 1 3.3193 1.4124 1.7357
32 1 3.9897 3.9500 2.3264
33 1 3.5527 5.2054 1.1426
34 1 5.4721 5.5244 3.0339
35 1 5.7739 6.8639 1.8867
36 1 7.8161 5.2893 3.5488
37 1 7.6712 7.0677 3.3496
38 1 10.0168 4.6212 1.8410
39 1 13.2250 4.4382 2.7361
40 1 7.7372 5.2890 -0.3324
41 1 8.1699 4.0076 0.8337
42 1 2.2471 4.4191 -1.1155
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000970454353.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:09
Heat of formation + Delta-G solvation = 58.007763 kcal
Electronic energy + Delta-G solvation = -22624.874528 eV
Core-core repulsion = 19221.100813 eV
Total energy + Delta-G solvation = -3403.773715 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.33706 -39.58019 -37.21769 -34.79711 -34.09563 -32.18763 -31.30605 -30.32037
-29.47938 -28.15759 -26.52674 -24.05977 -23.55890 -22.70999 -20.89178 -20.57126
-19.95023 -18.89661 -17.38142 -17.06268 -16.85342 -15.90031 -15.61921 -14.95020
-14.73905 -14.56637 -14.22999 -14.02257 -13.50427 -13.24569 -13.24184 -13.09451
-12.66661 -12.59157 -12.43047 -12.30093 -11.96305 -11.67609 -11.65584 -11.59394
-11.15299 -10.83796 -10.69221 -10.62293 -10.33257 -10.10155 -9.76270 -9.60217
-9.47956 -8.96111 -8.43668 -8.32317 -7.04211 -5.82017 -3.12619 1.82218
2.37447 2.66849 2.90838 3.37814 3.41318 3.46270 3.47072 4.22709
4.54652 4.60670 4.69134 4.80116 4.83643 4.90354 5.03196 5.08843
5.14949 5.29475 5.37111 5.38674 5.43311 5.53624 5.57536 5.64493
5.65997 5.79609 5.80153 5.98878 6.02688 6.16376 6.29362 6.40866
6.55996 6.61308 6.65900 6.91512 6.92604 7.62521 7.64611 7.83109
8.35371 8.46427 9.46741 10.01630 10.36182 11.40172
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.041513 B = 0.002527 C = 0.002465
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 674.332081 B =11078.424514 C =11354.967493
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.131 3.869
3 N -0.374 5.374
4 C 0.068 3.932
5 C -0.218 4.218
6 C -0.054 4.054
7 C 0.522 3.478
8 O -0.539 6.539
9 N -0.616 5.616
10 C 0.099 3.901
11 C -0.155 4.155
12 C 0.171 3.829
13 H 0.063 0.937
14 N -0.717 5.717
15 C -0.244 4.244
16 H 0.072 0.928
17 C -0.011 4.011
18 N -0.931 5.931
19 Si 0.910 3.090
20 H -0.285 1.285
21 H -0.291 1.291
22 H -0.285 1.285
23 C 0.102 3.898
24 C 0.062 3.938
25 N -0.298 5.298
26 H 0.070 0.930
27 H 0.073 0.927
28 H 0.059 0.941
29 H 0.083 0.917
30 H 0.094 0.906
31 H 0.170 0.830
32 H 0.095 0.905
33 H 0.098 0.902
34 H 0.069 0.931
35 H 0.065 0.935
36 H 0.074 0.926
37 H 0.075 0.925
38 H 0.386 0.614
39 H 0.257 0.743
40 H 0.063 0.937
41 H 0.069 0.931
42 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.658 -4.501 -0.333 24.084
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.010 3.990
3 N -0.156 5.156
4 C -0.078 4.078
5 C -0.230 4.230
6 C -0.095 4.095
7 C 0.311 3.689
8 O -0.416 6.416
9 N -0.351 5.351
10 C -0.025 4.025
11 C -0.196 4.196
12 C 0.059 3.941
13 H 0.081 0.919
14 N -0.357 5.357
15 C -0.375 4.375
16 H 0.090 0.910
17 C -0.208 4.208
18 N -0.578 5.578
19 Si 0.740 3.260
20 H -0.212 1.212
21 H -0.217 1.217
22 H -0.212 1.212
23 C -0.021 4.021
24 C -0.124 4.124
25 N -0.119 5.119
26 H 0.089 0.911
27 H 0.092 0.908
28 H 0.079 0.921
29 H 0.102 0.898
30 H 0.113 0.887
31 H 0.188 0.812
32 H 0.114 0.886
33 H 0.116 0.884
34 H 0.087 0.913
35 H 0.083 0.917
36 H 0.093 0.907
37 H 0.094 0.906
38 H 0.220 0.780
39 H 0.067 0.933
40 H 0.082 0.918
41 H 0.087 0.913
42 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges -24.300 -5.563 -1.652 24.983
hybrid contribution 1.545 0.715 0.985 1.967
sum -22.755 -4.847 -0.667 23.276
Atomic orbital electron populations
1.22050 0.93880 1.02730 1.03526 1.21658 0.95908 0.77672 1.03798
1.48556 1.35874 1.10057 1.21131 1.22249 0.94900 0.94295 0.96354
1.19435 1.06953 0.94953 1.01641 1.19857 0.90500 0.99387 0.99793
1.20371 0.85966 0.79653 0.82943 1.90700 1.82422 1.38549 1.29906
1.48541 1.10609 1.39237 1.36695 1.22385 0.99376 0.91882 0.88831
1.23555 0.92889 1.02608 1.00560 1.21191 0.85855 0.95155 0.91849
0.91885 1.42368 1.05081 1.08033 1.80247 1.19168 0.90254 0.90110
1.38005 0.91006 1.24782 0.97626 0.96098 1.02245 1.69659 1.20569
1.12831 1.54755 0.86240 0.81186 0.80106 0.78451 1.21188 1.21689
1.21178 1.22240 0.80486 1.00977 0.98430 1.23694 0.95625 0.97426
0.95656 1.77261 1.24585 0.96685 1.13378 0.91110 0.90809 0.92144
0.89846 0.88726 0.81248 0.88639 0.88352 0.91310 0.91650 0.90685
0.90617 0.77969 0.93318 0.91832 0.91312 0.80346
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.03 10.10 37.16 0.38 -0.66 16
2 C 0.13 0.96 7.23 -4.04 -0.03 0.94 16
3 N -0.37 -4.21 3.68 -61.37 -0.23 -4.43 16
4 C 0.07 0.76 11.36 -17.22 -0.20 0.56 16
5 C -0.22 -2.62 4.59 -105.05 -0.48 -3.10 16
6 C -0.05 -0.58 5.19 -29.03 -0.15 -0.73 16
7 C 0.52 7.98 7.84 -10.99 -0.09 7.89 16
8 O -0.54 -10.57 16.36 5.56 0.09 -10.48 16
9 N -0.62 -9.33 3.33 -170.52 -0.57 -9.90 16
10 C 0.10 1.21 6.69 -2.53 -0.02 1.19 16
11 C -0.15 -2.44 6.77 -24.58 -0.17 -2.61 16
12 C 0.17 3.25 3.59 -66.10 -0.24 3.01 16
13 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16
14 N -0.72 -17.45 5.25 -51.65 -0.27 -17.72 16
15 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16
16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16
18 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16
19 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16
20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
23 C 0.10 1.83 6.62 -3.06 -0.02 1.81 16
24 C 0.06 0.77 11.96 -17.36 -0.21 0.56 16
25 N -0.30 -3.96 12.42 30.63 0.38 -3.58 16
26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16
27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
28 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16
29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.09 0.46 8.07 -51.93 -0.42 0.04 16
31 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16
32 H 0.10 0.83 7.85 -51.93 -0.41 0.42 16
33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16
34 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16
35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16
37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16
38 H 0.39 10.15 7.51 -40.82 -0.31 9.84 16
39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
41 H 0.07 1.37 7.69 -51.93 -0.40 0.97 16
42 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16
LS Contribution 354.63 15.07 5.34 5.34
Total: -1.00 -34.59 354.63 -7.55 -42.14
By element:
Atomic # 1 Polarization: 13.53 SS G_CDS: -6.54 Total: 6.99 kcal
Atomic # 6 Polarization: 3.22 SS G_CDS: -1.46 Total: 1.76 kcal
Atomic # 7 Polarization: -62.66 SS G_CDS: 0.04 Total: -62.62 kcal
Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -34.59 -7.55 -42.14 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000970454353.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.145 kcal
(2) G-P(sol) polarization free energy of solvation -34.587 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds