Wall clock time and date at job start Tue Mar 31 2020 03:18:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 N 1.46501 * 109.47341 * 2 1
4 4 C 1.34948 * 126.03324 * 124.99925 * 3 2 1
5 5 C 1.35319 * 107.73994 * 180.02562 * 4 3 2
6 6 C 1.50707 * 126.03759 * 180.02562 * 5 4 3
7 7 C 1.50697 * 109.46941 * 90.00096 * 6 5 4
8 8 O 1.21277 * 120.00217 * 359.97438 * 7 6 5
9 9 N 1.34774 * 119.99872 * 179.97438 * 7 6 5
10 10 C 1.47434 * 125.64804 * 359.97438 * 9 7 6
11 11 C 1.54904 * 104.83221 * 155.91720 * 10 9 7
12 12 C 1.55160 * 101.58416 * 37.00719 * 11 10 9
13 13 H 1.09000 * 110.71813 * 83.04135 * 12 11 10
14 14 N 1.46496 * 110.71990 * 206.13427 * 12 11 10
15 15 C 1.36939 * 120.00077 * 273.54634 * 14 12 11
16 16 H 1.07997 * 119.99728 * 359.72656 * 15 14 12
17 17 C 1.38815 * 119.99845 * 180.02562 * 15 14 12
18 18 N 1.31619 * 119.99884 * 359.72042 * 17 15 14
19 19 Si 1.86798 * 119.99660 * 179.72678 * 17 15 14
20 20 H 1.48498 * 109.47416 * 59.99578 * 19 17 15
21 21 H 1.48508 * 109.46609 * 179.97438 * 19 17 15
22 22 H 1.48503 * 109.46903 * 299.99163 * 19 17 15
23 23 C 1.47023 * 125.64927 * 180.02562 * 9 7 6
24 24 C 1.39872 * 107.92411 * 0.26586 * 5 4 3
25 25 N 1.30839 * 108.19791 * 359.55119 * 24 5 4
26 26 H 1.08994 * 109.47247 * 59.99720 * 1 2 3
27 27 H 1.09001 * 109.47569 * 180.02562 * 1 2 3
28 28 H 1.09014 * 109.47180 * 300.00263 * 1 2 3
29 29 H 1.09003 * 109.46715 * 239.99630 * 2 1 3
30 30 H 1.09001 * 109.46953 * 120.00078 * 2 1 3
31 31 H 1.07992 * 126.13068 * 0.04428 * 4 3 2
32 32 H 1.08999 * 109.46684 * 329.99967 * 6 5 4
33 33 H 1.09002 * 109.46677 * 210.00300 * 6 5 4
34 34 H 1.08995 * 110.36490 * 37.07482 * 10 9 7
35 35 H 1.09000 * 110.46055 * 274.80167 * 10 9 7
36 36 H 1.09008 * 111.00525 * 278.93707 * 11 10 9
37 37 H 1.08994 * 111.04107 * 155.09646 * 11 10 9
38 38 H 0.97004 * 120.00009 * 93.55251 * 14 12 11
39 39 H 0.97000 * 119.99517 * 180.02562 * 18 17 15
40 40 H 1.08998 * 109.88202 * 61.59698 * 23 9 7
41 41 H 1.09004 * 109.88287 * 300.43103 * 23 9 7
42 42 H 1.07998 * 125.89968 * 179.73835 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.8731 1.9210 0.8939
5 6 3.0713 3.2136 0.5463
6 6 3.9549 4.1998 1.2660
7 6 5.3463 4.1410 0.6901
8 8 5.5960 3.3736 -0.2152
9 7 6.3132 4.9413 1.1811
10 6 6.1485 5.9166 2.2744
11 6 7.5705 6.0986 2.8610
12 6 8.4465 6.0267 1.5824
13 1 8.4809 6.9953 1.0836
14 7 9.7984 5.5641 1.9057
15 6 10.7539 6.4628 2.2991
16 1 10.5119 7.5132 2.3667
17 6 12.0350 6.0245 2.6049
18 7 12.3299 4.7444 2.5220
19 14 13.3404 7.2514 3.1341
20 1 12.8949 7.9468 4.3683
21 1 14.6133 6.5350 3.4020
22 1 13.5506 8.2476 2.0530
23 6 7.7066 4.9871 0.7145
24 6 2.3069 3.4744 -0.5956
25 7 1.6801 2.3749 -0.9276
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8901
29 1 1.8932 -0.5139 -0.8900
30 1 1.8933 -0.5139 0.8900
31 1 3.3193 1.4124 1.7357
32 1 3.9897 3.9500 2.3264
33 1 3.5527 5.2054 1.1426
34 1 5.4721 5.5244 3.0339
35 1 5.7739 6.8639 1.8867
36 1 7.8161 5.2893 3.5488
37 1 7.6712 7.0677 3.3496
38 1 10.0168 4.6212 1.8410
39 1 13.2250 4.4382 2.7361
40 1 7.7372 5.2890 -0.3324
41 1 8.1699 4.0076 0.8337
42 1 2.2471 4.4191 -1.1155
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000970454353.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:09
Heat of formation + Delta-G solvation = 34.413313 kcal
Electronic energy + Delta-G solvation = -22625.897660 eV
Core-core repulsion = 19221.100813 eV
Total energy + Delta-G solvation = -3404.796847 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-42.17203 -40.81239 -38.59129 -35.86877 -35.48479 -33.47292 -32.71412 -31.09857
-30.87454 -29.51879 -27.60888 -25.52351 -24.64613 -23.96202 -21.76309 -21.60106
-21.24195 -19.99245 -19.30139 -18.03489 -17.84586 -17.27094 -16.48069 -16.39746
-16.04714 -15.57627 -15.35808 -15.23139 -14.87240 -14.63655 -14.35521 -13.96936
-13.92357 -13.62257 -13.25650 -13.17438 -13.09043 -12.96242 -12.91211 -12.61880
-12.60252 -12.32622 -12.24482 -12.10782 -11.73427 -11.64676 -11.43339 -10.90509
-10.86822 -10.32360 -9.58588 -9.28608 -9.02368 -7.93377 -5.23619 0.99601
1.50038 1.53208 1.58984 1.64960 1.75298 1.76135 2.26255 2.59255
3.38718 3.59170 3.69749 3.82978 3.96857 4.00217 4.08674 4.11337
4.20038 4.31887 4.33402 4.36073 4.48197 4.50401 4.58704 4.72187
4.74670 4.80638 4.85894 4.94322 4.98869 5.06447 5.21984 5.22995
5.26973 5.34674 5.49799 5.56539 5.74758 6.18652 6.27180 6.67965
6.77938 7.28692 7.33274 8.06030 8.29376 9.30100
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.041513 B = 0.002527 C = 0.002465
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 674.332081 B =11078.424514 C =11354.967493
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.119 3.881
3 N -0.377 5.377
4 C 0.064 3.936
5 C -0.238 4.238
6 C -0.040 4.040
7 C 0.519 3.481
8 O -0.591 6.591
9 N -0.616 5.616
10 C 0.106 3.894
11 C -0.146 4.146
12 C 0.164 3.836
13 H 0.068 0.932
14 N -0.733 5.733
15 C -0.238 4.238
16 H 0.084 0.916
17 C -0.079 4.079
18 N -0.973 5.973
19 Si 0.976 3.024
20 H -0.273 1.273
21 H -0.301 1.301
22 H -0.278 1.278
23 C 0.111 3.889
24 C 0.048 3.952
25 N -0.333 5.333
26 H 0.049 0.951
27 H 0.098 0.902
28 H 0.057 0.943
29 H 0.081 0.919
30 H 0.124 0.876
31 H 0.196 0.804
32 H 0.125 0.875
33 H 0.128 0.872
34 H 0.107 0.893
35 H 0.095 0.905
36 H 0.055 0.945
37 H 0.088 0.912
38 H 0.371 0.629
39 H 0.250 0.750
40 H 0.055 0.945
41 H 0.039 0.961
42 H 0.193 0.807
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.627 -3.237 1.234 25.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.000 4.000
3 N -0.160 5.160
4 C -0.083 4.083
5 C -0.250 4.250
6 C -0.081 4.081
7 C 0.310 3.690
8 O -0.472 6.472
9 N -0.350 5.350
10 C -0.015 4.015
11 C -0.187 4.187
12 C 0.054 3.946
13 H 0.086 0.914
14 N -0.373 5.373
15 C -0.369 4.369
16 H 0.102 0.898
17 C -0.271 4.271
18 N -0.623 5.623
19 Si 0.805 3.195
20 H -0.199 1.199
21 H -0.227 1.227
22 H -0.204 1.204
23 C -0.014 4.014
24 C -0.137 4.137
25 N -0.155 5.155
26 H 0.068 0.932
27 H 0.117 0.883
28 H 0.076 0.924
29 H 0.100 0.900
30 H 0.142 0.858
31 H 0.213 0.787
32 H 0.143 0.857
33 H 0.146 0.854
34 H 0.126 0.874
35 H 0.113 0.887
36 H 0.074 0.926
37 H 0.107 0.893
38 H 0.203 0.797
39 H 0.059 0.941
40 H 0.073 0.927
41 H 0.057 0.943
42 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges -26.348 -4.245 -0.073 26.688
hybrid contribution 2.074 0.276 0.439 2.138
sum -24.275 -3.969 0.367 24.600
Atomic orbital electron populations
1.21985 0.93117 1.03952 1.02293 1.22017 0.96624 0.76241 1.05153
1.48909 1.35671 1.10819 1.20585 1.22786 0.94318 0.94415 0.96788
1.19703 1.07508 0.95805 1.01984 1.19900 0.86662 1.00822 1.00669
1.21312 0.87357 0.78264 0.82073 1.90682 1.83442 1.40660 1.32386
1.48640 1.09145 1.39926 1.37275 1.22567 0.97598 0.92752 0.88626
1.23358 0.94343 1.02639 0.98320 1.21409 0.84109 0.95191 0.93870
0.91420 1.42569 1.07051 1.07054 1.80609 1.19607 0.90643 0.90915
1.35772 0.89788 1.25624 1.00022 0.97733 1.03705 1.69834 1.20521
1.14846 1.57115 0.85176 0.78042 0.77866 0.78448 1.19924 1.22714
1.20418 1.21901 0.82524 0.99007 0.97968 1.24071 0.95667 0.97898
0.96088 1.77194 1.25858 0.97618 1.14785 0.93186 0.88338 0.92411
0.90021 0.85844 0.78668 0.85659 0.85383 0.87447 0.88662 0.92605
0.89302 0.79747 0.94120 0.92683 0.94263 0.78996
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.77 10.10 71.98 0.73 -1.04 16
2 C 0.12 1.60 7.23 86.38 0.62 2.22 16
3 N -0.38 -8.09 3.68 -348.06 -1.28 -9.37 16
4 C 0.06 1.30 11.36 83.54 0.95 2.25 16
5 C -0.24 -5.24 4.59 -20.14 -0.09 -5.33 16
6 C -0.04 -0.71 5.19 29.10 0.15 -0.56 16
7 C 0.52 14.89 7.84 87.66 0.69 15.58 16
8 O -0.59 -23.19 16.36 -3.02 -0.05 -23.24 16
9 N -0.62 -17.40 3.33 -811.79 -2.70 -20.10 16
10 C 0.11 2.16 6.69 86.85 0.58 2.74 16
11 C -0.15 -4.25 6.77 31.99 0.22 -4.03 16
12 C 0.16 6.10 3.59 46.18 0.17 6.27 16
13 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16
14 N -0.73 -36.22 5.25 -317.33 -1.67 -37.88 16
15 C -0.24 -12.73 9.98 84.03 0.84 -11.89 16
16 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16
17 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16
18 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16
19 Si 0.98 45.21 29.55 68.60 2.03 47.23 16
20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
21 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16
22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16
23 C 0.11 3.99 6.62 86.73 0.57 4.56 16
24 C 0.05 1.15 11.96 85.24 1.02 2.17 16
25 N -0.33 -8.74 12.42 -57.02 -0.71 -9.45 16
26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16
27 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16
28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16
29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
30 H 0.12 0.90 8.07 -2.39 -0.02 0.88 16
31 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16
32 H 0.13 1.52 7.85 -2.39 -0.02 1.50 16
33 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16
34 H 0.11 1.47 7.48 -2.39 -0.02 1.45 16
35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16
36 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16
37 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16
38 H 0.37 20.27 7.51 -92.71 -0.70 19.57 16
39 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16
40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
41 H 0.04 1.64 7.69 -2.38 -0.02 1.62 16
42 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16
Total: -1.00 -78.35 354.63 3.13 -75.22
By element:
Atomic # 1 Polarization: 27.57 SS G_CDS: 0.32 Total: 27.88 kcal
Atomic # 6 Polarization: 2.04 SS G_CDS: 6.91 Total: 8.95 kcal
Atomic # 7 Polarization: -129.97 SS G_CDS: -6.07 Total: -136.04 kcal
Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal
Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal
Total: -78.35 3.13 -75.22 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000970454353.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.629 kcal
(2) G-P(sol) polarization free energy of solvation -78.346 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.283 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.413 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds