Wall clock time and date at job start Tue Mar 31 2020 03:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34949 * 126.03796 * 2 1 4 4 C 1.35319 * 107.74540 * 180.15250 * 3 2 1 5 5 C 1.50692 * 126.03952 * 179.87802 * 4 3 2 6 6 C 1.53006 * 109.46998 * 269.71058 * 5 4 3 7 7 C 1.50698 * 109.47319 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99985 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00324 * 180.02562 * 7 6 5 10 10 C 1.47425 * 125.64433 * 0.02562 * 9 7 6 11 11 C 1.54912 * 104.83031 * 155.84149 * 10 9 7 12 12 C 1.55165 * 101.58248 * 37.00710 * 11 10 9 13 13 H 1.08999 * 110.71851 * 83.03672 * 12 11 10 14 14 N 1.46490 * 110.72000 * 206.13624 * 12 11 10 15 15 C 1.36935 * 120.00121 * 271.15446 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.47316 * 125.61499 * 180.16864 * 9 7 6 24 24 C 1.39872 * 107.91693 * 359.61145 * 4 3 2 25 25 N 1.30836 * 108.20518 * 0.24395 * 24 4 3 26 26 H 1.09002 * 109.47162 * 270.30676 * 1 2 3 27 27 H 1.09000 * 109.47572 * 30.30399 * 1 2 3 28 28 H 1.09000 * 109.47293 * 150.30783 * 1 2 3 29 29 H 1.08001 * 126.12640 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.47314 * 149.71631 * 5 4 3 31 31 H 1.09003 * 109.47223 * 29.70974 * 5 4 3 32 32 H 1.08999 * 109.47139 * 60.00212 * 6 5 4 33 33 H 1.09003 * 109.47065 * 300.00013 * 6 5 4 34 34 H 1.08990 * 110.36757 * 37.00335 * 10 9 7 35 35 H 1.09000 * 110.45945 * 274.72025 * 10 9 7 36 36 H 1.08997 * 111.00361 * 278.93988 * 11 10 9 37 37 H 1.08998 * 111.00614 * 155.08391 * 11 10 9 38 38 H 0.97000 * 120.00577 * 91.16046 * 14 12 11 39 39 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 40 40 H 1.08997 * 110.06928 * 61.74469 * 23 9 7 41 41 H 1.09000 * 109.84708 * 300.48149 * 23 9 7 42 42 H 1.08004 * 125.89633 * 180.22384 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7679 1.5452 -0.0073 6 6 5.1824 1.8360 -1.4511 7 6 6.4071 2.7142 -1.4551 8 8 6.9002 3.0719 -0.4063 9 7 6.9544 3.1021 -2.6240 10 6 6.4598 2.7428 -3.9654 11 6 6.9814 3.8671 -4.8947 12 6 8.3793 4.1520 -4.2846 13 1 9.1157 3.4409 -4.6590 14 7 8.7982 5.5268 -4.5684 15 6 9.4864 5.8093 -5.7180 16 1 9.7200 5.0188 -6.4157 17 6 9.8839 7.1120 -5.9867 18 7 9.5997 8.0754 -5.1362 19 14 10.8221 7.4975 -7.5554 20 1 11.1281 8.9498 -7.6048 21 1 12.0896 6.7240 -7.5767 22 1 9.9951 7.1251 -8.7311 23 6 8.1479 3.9530 -2.7718 24 6 3.5346 -0.7322 0.0034 25 7 2.2891 -1.1328 0.0054 26 1 -0.3633 0.0055 1.0277 27 1 -0.3634 0.8872 -0.5185 28 1 -0.3634 -0.8927 -0.5090 29 1 1.9281 2.1193 0.0004 30 1 5.5820 1.0364 0.5089 31 1 4.5441 2.4824 0.5023 32 1 4.3684 2.3448 -1.9674 33 1 5.4063 0.8987 -1.9607 34 1 5.3702 2.7185 -3.9740 35 1 6.8625 1.7781 -4.2743 36 1 6.3432 4.7488 -4.8374 37 1 7.0681 3.5155 -5.9228 38 1 8.5882 6.2370 -3.9420 39 1 9.1122 7.8752 -4.3218 40 1 9.0137 3.4638 -2.3256 41 1 7.9766 4.9171 -2.2931 42 1 4.4053 -1.3711 0.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970788117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:29 Heat of formation + Delta-G solvation = 54.635171 kcal Electronic energy + Delta-G solvation = -22442.437767 eV Core-core repulsion = 19038.517806 eV Total energy + Delta-G solvation = -3403.919962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.46839 -39.80454 -37.43904 -34.52880 -34.40981 -32.83248 -31.57137 -29.78713 -29.45962 -27.90519 -26.83816 -24.36047 -23.23074 -22.59724 -21.37213 -20.41943 -20.14100 -18.97017 -17.57283 -17.33296 -16.63837 -16.05683 -15.77199 -15.30946 -14.83478 -14.68921 -14.61305 -13.79096 -13.59944 -13.46436 -13.30620 -13.21422 -12.97197 -12.67510 -12.58801 -12.29897 -12.01139 -11.87489 -11.74017 -11.25860 -11.07880 -10.75115 -10.71931 -10.65949 -10.32394 -10.01577 -9.71372 -9.69767 -9.24579 -8.98828 -8.61489 -8.43596 -7.13261 -6.16314 -3.18203 1.59829 2.22836 2.50745 2.79129 3.18366 3.48999 3.52258 3.69959 4.18901 4.55145 4.57816 4.62442 4.73247 4.82039 4.95348 4.99076 5.00630 5.05696 5.17628 5.26022 5.36778 5.42339 5.49638 5.52516 5.59775 5.62643 5.71913 5.89301 5.97876 6.05052 6.09793 6.17401 6.29915 6.39472 6.50794 6.52758 6.70866 6.81190 7.41212 7.71405 7.74623 8.32436 8.68796 9.13421 9.99971 10.13580 11.31545 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037817 B = 0.002404 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.231882 B =11646.805796 C =11849.501482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.056 3.944 4 C -0.233 4.233 5 C -0.024 4.024 6 C -0.128 4.128 7 C 0.523 3.477 8 O -0.548 6.548 9 N -0.615 5.615 10 C 0.099 3.901 11 C -0.154 4.154 12 C 0.176 3.824 13 H 0.066 0.934 14 N -0.727 5.727 15 C -0.336 4.336 16 H 0.067 0.933 17 C -0.043 4.043 18 N -0.940 5.940 19 Si 1.081 2.919 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.295 1.295 23 C 0.100 3.900 24 C 0.053 3.947 25 N -0.301 5.301 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.173 0.827 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.369 0.631 39 H 0.256 0.744 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.381 -16.720 7.854 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.162 5.162 3 C -0.090 4.090 4 C -0.245 4.245 5 C -0.063 4.063 6 C -0.168 4.168 7 C 0.312 3.688 8 O -0.426 6.426 9 N -0.349 5.349 10 C -0.024 4.024 11 C -0.195 4.195 12 C 0.065 3.935 13 H 0.084 0.916 14 N -0.369 5.369 15 C -0.467 4.467 16 H 0.085 0.915 17 C -0.241 4.241 18 N -0.585 5.585 19 Si 0.912 3.088 20 H -0.210 1.210 21 H -0.222 1.222 22 H -0.222 1.222 23 C -0.023 4.023 24 C -0.133 4.133 25 N -0.122 5.122 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.191 0.809 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.203 0.797 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.310 -16.472 7.438 25.026 hybrid contribution -0.421 -0.363 0.901 1.059 sum -17.732 -16.835 8.339 25.833 Atomic orbital electron populations 1.21845 0.74284 1.04501 1.03318 1.48459 1.06608 1.03908 1.57203 1.22387 0.90922 0.93388 1.02266 1.20139 0.94497 0.94013 1.15813 1.19592 0.93517 0.98457 0.94739 1.21646 0.95728 0.99883 0.99524 1.20420 0.85288 0.80885 0.82256 1.90697 1.63828 1.57252 1.30811 1.48610 1.29782 1.50672 1.05856 1.22376 0.98828 0.98910 0.82273 1.23538 1.00225 0.97214 0.98554 1.21128 0.93436 0.89004 0.89979 0.91610 1.42376 1.67497 1.02481 1.24571 1.20015 1.32243 0.95971 0.98447 0.91536 1.25828 1.01645 0.91455 1.05138 1.70886 1.42428 1.33353 1.11826 0.83229 0.75503 0.76081 0.74028 1.21011 1.22171 1.22197 1.22344 0.86759 0.94563 0.98681 1.23849 0.95148 0.94675 0.99594 1.77348 1.01789 1.08340 1.24720 0.90831 0.89448 0.89337 0.80935 0.90338 0.90661 0.89285 0.89080 0.91276 0.91579 0.90863 0.90506 0.79707 0.93292 0.91611 0.91450 0.80010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.47 59.85 0.69 1.16 16 2 N -0.38 -3.38 4.01 -68.16 -0.27 -3.65 16 3 C 0.06 0.48 11.40 -17.22 -0.20 0.28 16 4 C -0.23 -2.23 5.35 -105.05 -0.56 -2.80 16 5 C -0.02 -0.24 4.99 -27.88 -0.14 -0.38 16 6 C -0.13 -1.33 4.69 -27.88 -0.13 -1.46 16 7 C 0.52 7.79 7.85 -10.99 -0.09 7.71 16 8 O -0.55 -10.17 16.31 5.55 0.09 -10.08 16 9 N -0.61 -9.35 3.33 -170.28 -0.57 -9.92 16 10 C 0.10 1.27 6.69 -2.53 -0.02 1.25 16 11 C -0.15 -2.49 6.77 -24.58 -0.17 -2.65 16 12 C 0.18 3.39 3.59 -66.09 -0.24 3.15 16 13 H 0.07 1.28 8.11 -51.93 -0.42 0.85 16 14 N -0.73 -17.74 5.23 -51.65 -0.27 -18.01 16 15 C -0.34 -9.16 9.97 -15.06 -0.15 -9.31 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 18 N -0.94 -28.76 13.70 55.49 0.76 -28.00 16 19 Si 1.08 25.38 29.92 -169.99 -5.09 20.30 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.10 1.78 6.64 -2.90 -0.02 1.76 16 24 C 0.05 0.53 11.96 -17.36 -0.21 0.32 16 25 N -0.30 -3.34 12.58 30.63 0.39 -2.96 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 30 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.09 0.83 7.84 -51.93 -0.41 0.42 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.73 7.47 -51.93 -0.39 0.34 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.37 9.41 6.37 -40.82 -0.26 9.15 16 39 H 0.26 7.72 6.77 -40.82 -0.28 7.45 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.32 7.70 -51.93 -0.40 0.92 16 42 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -35.17 352.83 -7.39 -42.56 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.43 Total: 6.72 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.32 Total: -2.29 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.03 Total: -62.53 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.09 Total: 20.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.17 -7.39 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970788117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.195 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds