Wall clock time and date at job start Tue Mar 31 2020 03:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34949 * 126.03796 * 2 1 4 4 C 1.35319 * 107.74540 * 180.15250 * 3 2 1 5 5 C 1.50692 * 126.03952 * 179.87802 * 4 3 2 6 6 C 1.53006 * 109.46998 * 269.71058 * 5 4 3 7 7 C 1.50698 * 109.47319 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99985 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00324 * 180.02562 * 7 6 5 10 10 C 1.47425 * 125.64433 * 0.02562 * 9 7 6 11 11 C 1.54912 * 104.83031 * 155.84149 * 10 9 7 12 12 C 1.55165 * 101.58248 * 37.00710 * 11 10 9 13 13 H 1.08999 * 110.71851 * 83.03672 * 12 11 10 14 14 N 1.46490 * 110.72000 * 206.13624 * 12 11 10 15 15 C 1.36935 * 120.00121 * 271.15446 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.47316 * 125.61499 * 180.16864 * 9 7 6 24 24 C 1.39872 * 107.91693 * 359.61145 * 4 3 2 25 25 N 1.30836 * 108.20518 * 0.24395 * 24 4 3 26 26 H 1.09002 * 109.47162 * 270.30676 * 1 2 3 27 27 H 1.09000 * 109.47572 * 30.30399 * 1 2 3 28 28 H 1.09000 * 109.47293 * 150.30783 * 1 2 3 29 29 H 1.08001 * 126.12640 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.47314 * 149.71631 * 5 4 3 31 31 H 1.09003 * 109.47223 * 29.70974 * 5 4 3 32 32 H 1.08999 * 109.47139 * 60.00212 * 6 5 4 33 33 H 1.09003 * 109.47065 * 300.00013 * 6 5 4 34 34 H 1.08990 * 110.36757 * 37.00335 * 10 9 7 35 35 H 1.09000 * 110.45945 * 274.72025 * 10 9 7 36 36 H 1.08997 * 111.00361 * 278.93988 * 11 10 9 37 37 H 1.08998 * 111.00614 * 155.08391 * 11 10 9 38 38 H 0.97000 * 120.00577 * 91.16046 * 14 12 11 39 39 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 40 40 H 1.08997 * 110.06928 * 61.74469 * 23 9 7 41 41 H 1.09000 * 109.84708 * 300.48149 * 23 9 7 42 42 H 1.08004 * 125.89633 * 180.22384 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7679 1.5452 -0.0073 6 6 5.1824 1.8360 -1.4511 7 6 6.4071 2.7142 -1.4551 8 8 6.9002 3.0719 -0.4063 9 7 6.9544 3.1021 -2.6240 10 6 6.4598 2.7428 -3.9654 11 6 6.9814 3.8671 -4.8947 12 6 8.3793 4.1520 -4.2846 13 1 9.1157 3.4409 -4.6590 14 7 8.7982 5.5268 -4.5684 15 6 9.4864 5.8093 -5.7180 16 1 9.7200 5.0188 -6.4157 17 6 9.8839 7.1120 -5.9867 18 7 9.5997 8.0754 -5.1362 19 14 10.8221 7.4975 -7.5554 20 1 11.1281 8.9498 -7.6048 21 1 12.0896 6.7240 -7.5767 22 1 9.9951 7.1251 -8.7311 23 6 8.1479 3.9530 -2.7718 24 6 3.5346 -0.7322 0.0034 25 7 2.2891 -1.1328 0.0054 26 1 -0.3633 0.0055 1.0277 27 1 -0.3634 0.8872 -0.5185 28 1 -0.3634 -0.8927 -0.5090 29 1 1.9281 2.1193 0.0004 30 1 5.5820 1.0364 0.5089 31 1 4.5441 2.4824 0.5023 32 1 4.3684 2.3448 -1.9674 33 1 5.4063 0.8987 -1.9607 34 1 5.3702 2.7185 -3.9740 35 1 6.8625 1.7781 -4.2743 36 1 6.3432 4.7488 -4.8374 37 1 7.0681 3.5155 -5.9228 38 1 8.5882 6.2370 -3.9420 39 1 9.1122 7.8752 -4.3218 40 1 9.0137 3.4638 -2.3256 41 1 7.9766 4.9171 -2.2931 42 1 4.4053 -1.3711 0.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970788117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:28 Heat of formation + Delta-G solvation = 30.871122 kcal Electronic energy + Delta-G solvation = -22443.468254 eV Core-core repulsion = 19038.517806 eV Total energy + Delta-G solvation = -3404.950448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.12406 -41.04601 -38.82762 -36.23332 -35.28059 -33.60209 -33.19066 -30.98502 -30.56011 -29.19718 -27.62467 -25.73052 -24.85939 -23.71085 -21.99239 -21.75835 -21.01913 -20.12625 -19.53752 -18.29532 -17.48617 -17.32075 -16.77364 -16.43449 -16.20788 -15.96838 -15.53640 -15.29751 -14.89338 -14.59796 -14.21472 -14.09580 -13.81967 -13.64454 -13.50745 -13.31787 -13.26714 -12.98807 -12.78584 -12.75329 -12.43842 -12.39262 -12.03726 -11.87564 -11.79672 -11.43736 -11.29645 -10.93531 -10.91058 -10.35292 -9.70919 -9.28945 -9.15804 -8.39263 -5.35185 0.96542 1.60549 1.63041 1.70421 1.70892 1.77077 1.86496 2.04160 2.73070 3.36670 3.48811 3.64059 3.70123 3.81913 3.98448 4.01472 4.19157 4.22484 4.25155 4.33479 4.39068 4.43163 4.45376 4.56793 4.62893 4.70860 4.72724 4.78450 4.83386 4.92340 4.96982 5.13327 5.19428 5.29398 5.35707 5.37621 5.60868 5.72620 6.16160 6.47287 6.54930 6.75425 7.05194 7.14307 7.94461 8.07401 9.12022 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037817 B = 0.002404 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.231882 B =11646.805796 C =11849.501482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.062 3.938 4 C -0.248 4.248 5 C -0.015 4.015 6 C -0.114 4.114 7 C 0.518 3.482 8 O -0.592 6.592 9 N -0.616 5.616 10 C 0.108 3.892 11 C -0.145 4.145 12 C 0.168 3.832 13 H 0.067 0.933 14 N -0.744 5.744 15 C -0.328 4.328 16 H 0.075 0.925 17 C -0.107 4.107 18 N -0.977 5.977 19 Si 1.129 2.871 20 H -0.297 1.297 21 H -0.277 1.277 22 H -0.274 1.274 23 C 0.109 3.891 24 C 0.046 3.954 25 N -0.337 5.337 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.201 0.799 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.358 0.642 39 H 0.242 0.758 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.105 -18.509 6.620 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.085 4.085 4 C -0.259 4.259 5 C -0.054 4.054 6 C -0.153 4.153 7 C 0.310 3.690 8 O -0.473 6.473 9 N -0.350 5.350 10 C -0.014 4.014 11 C -0.186 4.186 12 C 0.059 3.941 13 H 0.085 0.915 14 N -0.385 5.385 15 C -0.459 4.459 16 H 0.093 0.907 17 C -0.298 4.298 18 N -0.625 5.625 19 Si 0.954 3.046 20 H -0.223 1.223 21 H -0.204 1.204 22 H -0.199 1.199 23 C -0.016 4.016 24 C -0.140 4.140 25 N -0.159 5.159 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.108 0.892 29 H 0.218 0.782 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.190 0.810 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -19.085 -18.354 6.195 27.194 hybrid contribution 0.054 0.127 1.361 1.368 sum -19.032 -18.227 7.556 27.414 Atomic orbital electron populations 1.22171 0.72204 1.05892 1.04460 1.48805 1.07890 1.03447 1.56307 1.22846 0.90610 0.94470 1.00577 1.20082 0.94663 0.93757 1.17436 1.19430 0.93549 0.97979 0.94436 1.21661 0.93690 0.99792 1.00168 1.21311 0.85935 0.80535 0.81243 1.90681 1.65259 1.58934 1.32382 1.48717 1.28863 1.50169 1.07276 1.22514 1.00909 0.98339 0.79624 1.23342 0.97394 0.98008 0.99832 1.21339 0.95223 0.86400 0.91159 0.91482 1.42577 1.67838 1.04316 1.23810 1.20377 1.30657 0.95994 0.98898 0.90746 1.27263 1.03005 0.91900 1.07604 1.71000 1.44702 1.34353 1.12415 0.82610 0.75293 0.75285 0.71425 1.22341 1.20357 1.19948 1.22008 0.88143 0.94028 0.97406 1.24150 0.95407 0.95205 0.99193 1.77296 1.02514 1.09924 1.26172 0.89820 0.86827 0.89225 0.78194 0.91551 0.91627 0.87122 0.86896 0.87832 0.88837 0.92664 0.89436 0.80977 0.94716 0.92206 0.93991 0.78723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.47 127.77 1.47 2.10 16 2 N -0.38 -5.95 4.01 -369.56 -1.48 -7.43 16 3 C 0.06 0.88 11.40 83.54 0.95 1.83 16 4 C -0.25 -4.24 5.35 -20.14 -0.11 -4.35 16 5 C -0.01 -0.28 4.99 29.85 0.15 -0.13 16 6 C -0.11 -2.03 4.69 29.85 0.14 -1.89 16 7 C 0.52 14.69 7.85 87.66 0.69 15.38 16 8 O -0.59 -22.03 16.31 -3.05 -0.05 -22.08 16 9 N -0.62 -17.70 3.33 -811.05 -2.70 -20.40 16 10 C 0.11 2.36 6.69 86.86 0.58 2.94 16 11 C -0.14 -4.39 6.77 31.99 0.22 -4.18 16 12 C 0.17 6.40 3.59 46.19 0.17 6.56 16 13 H 0.07 2.53 8.11 -2.39 -0.02 2.51 16 14 N -0.74 -36.89 5.23 -317.33 -1.66 -38.55 16 15 C -0.33 -17.90 9.97 84.03 0.84 -17.06 16 16 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 17 C -0.11 -6.13 5.50 84.86 0.47 -5.66 16 18 N -0.98 -61.30 13.70 21.65 0.30 -61.01 16 19 Si 1.13 50.98 29.92 68.60 2.05 53.03 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 23 C 0.11 3.90 6.64 86.67 0.58 4.48 16 24 C 0.05 0.84 11.96 85.24 1.02 1.86 16 25 N -0.34 -7.01 12.58 -57.02 -0.72 -7.73 16 26 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 31 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 32 H 0.11 1.57 7.84 -2.39 -0.02 1.55 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 1.65 7.47 -2.39 -0.02 1.63 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 38 H 0.36 19.06 6.37 -92.71 -0.59 18.47 16 39 H 0.24 15.27 6.77 -92.71 -0.63 14.65 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 41 H 0.04 1.71 7.70 -2.39 -0.02 1.69 16 42 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -78.39 352.83 3.45 -74.94 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.56 Total: 27.35 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 7.15 Total: 1.89 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -6.27 Total: -135.12 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.03 kcal Total: -78.39 3.45 -74.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970788117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.810 kcal (2) G-P(sol) polarization free energy of solvation -78.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds