Wall clock time and date at job start Tue Mar 31 2020 03:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47038 * 2 1 4 4 C 1.50694 * 109.47233 * 240.00188 * 2 1 3 5 5 O 1.21280 * 119.99998 * 248.97641 * 4 2 1 6 6 N 1.34782 * 120.00167 * 68.96930 * 4 2 1 7 7 C 1.47016 * 125.64534 * 4.06545 * 6 4 2 8 8 C 1.54336 * 107.26100 * 178.84869 * 7 6 4 9 9 C 1.55155 * 103.02487 * 338.13768 * 8 7 6 10 10 H 1.08999 * 111.00302 * 277.23575 * 9 8 7 11 11 N 1.46496 * 111.00811 * 153.38312 * 9 8 7 12 12 C 1.46495 * 119.99915 * 307.80938 * 11 9 8 13 13 C 1.36933 * 120.00055 * 127.80326 * 11 9 8 14 14 H 1.08000 * 119.99897 * 23.60443 * 13 11 9 15 15 C 1.38818 * 120.00172 * 203.60365 * 13 11 9 16 16 N 1.31613 * 119.99626 * 12.58577 * 15 13 11 17 17 Si 1.86801 * 120.00169 * 192.58712 * 15 13 11 18 18 H 1.48506 * 109.46891 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47059 * 120.00022 * 17 15 13 20 20 H 1.48497 * 109.46919 * 240.00078 * 17 15 13 21 21 C 1.47424 * 125.64715 * 184.36625 * 6 4 2 22 22 N 1.46498 * 109.47044 * 119.99874 * 2 1 3 23 23 C 1.34945 * 126.03701 * 35.00303 * 22 2 1 24 24 C 1.35313 * 107.74595 * 180.20427 * 23 22 2 25 25 C 1.39871 * 107.92236 * 359.64099 * 24 23 22 26 26 N 1.30839 * 108.19660 * 0.36388 * 25 24 23 27 27 H 1.09007 * 109.46951 * 67.49292 * 1 2 3 28 28 H 1.08993 * 109.47304 * 187.49340 * 1 2 3 29 29 H 1.09004 * 109.47519 * 307.49578 * 1 2 3 30 30 H 1.09001 * 109.88412 * 298.38532 * 7 6 4 31 31 H 1.08995 * 109.88897 * 59.56043 * 7 6 4 32 32 H 1.09008 * 110.84895 * 219.66529 * 8 7 6 33 33 H 1.09000 * 110.66862 * 96.52583 * 8 7 6 34 34 H 1.09002 * 109.47918 * 88.87185 * 12 11 9 35 35 H 1.08998 * 109.46981 * 208.87572 * 12 11 9 36 36 H 1.09008 * 109.47054 * 328.86728 * 12 11 9 37 37 H 0.97001 * 120.00029 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.36946 * 322.93688 * 21 6 4 39 39 H 1.09004 * 110.36412 * 85.14421 * 21 6 4 40 40 H 1.07998 * 126.12596 * 359.93485 * 23 22 2 41 41 H 1.08004 * 126.03965 * 179.76725 * 24 23 22 42 42 H 1.08000 * 125.90168 * 180.13781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.5897 -1.7824 -1.1266 6 7 1.8621 -0.1543 -2.4463 7 6 1.2827 1.1712 -2.7088 8 6 1.3166 1.3915 -4.2360 9 6 2.4235 0.4113 -4.7062 10 1 3.4131 0.8516 -4.5836 11 7 2.2036 -0.0024 -6.0942 12 6 0.9037 -0.5419 -6.5005 13 6 3.2131 0.1153 -7.0119 14 1 4.2417 0.1382 -6.6833 15 6 2.9146 0.2053 -8.3646 16 7 1.6763 0.4264 -8.7518 17 14 4.2702 0.0123 -9.6352 18 1 5.5640 -0.2264 -8.9463 19 1 3.9596 -1.1396 -10.5193 20 1 4.3648 1.2503 -10.4499 21 6 2.2202 -0.7771 -3.7337 22 7 2.0183 -0.6906 1.1962 23 6 1.4402 -1.7559 1.7895 24 6 2.1939 -2.0897 2.8625 25 6 3.2740 -1.2031 2.9225 26 7 3.1681 -0.3620 1.9258 27 1 -0.3633 0.3934 -0.9495 28 1 -0.3633 -1.0188 0.1340 29 1 -0.3634 0.6255 0.8154 30 1 0.2538 1.2036 -2.3504 31 1 1.8749 1.9396 -2.2121 32 1 1.5862 2.4207 -4.4736 33 1 0.3569 1.1329 -4.6834 34 1 0.2532 0.2746 -6.8142 35 1 1.0414 -1.2358 -7.3298 36 1 0.4491 -1.0663 -5.6599 37 1 1.4676 0.4896 -9.6970 38 1 3.1430 -1.3487 -3.6349 39 1 1.4119 -1.4203 -4.0818 40 1 0.5354 -2.2504 1.4682 41 1 1.9974 -2.8992 3.5499 42 1 4.0578 -1.2091 3.6654 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971119242.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:11 Heat of formation + Delta-G solvation = 85.524835 kcal Electronic energy + Delta-G solvation = -23676.370281 eV Core-core repulsion = 20273.789796 eV Total energy + Delta-G solvation = -3402.580485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.38508 -39.85980 -37.57532 -35.02000 -34.59769 -31.73786 -30.21072 -29.93479 -29.60112 -27.90921 -26.12656 -25.29535 -23.47437 -22.41093 -21.20798 -20.90605 -19.41730 -19.21618 -17.33439 -17.30602 -17.05853 -16.01328 -15.34341 -15.01525 -14.69089 -14.29923 -14.18639 -13.69580 -13.59022 -13.40883 -13.18946 -12.94641 -12.69000 -12.56498 -12.50796 -12.37224 -11.90288 -11.85286 -11.43279 -11.00871 -10.84868 -10.75422 -10.58989 -10.52896 -10.28498 -10.06803 -9.96256 -9.89791 -9.40892 -8.66219 -8.62170 -8.48820 -6.87179 -5.84653 -3.30733 1.77766 2.24924 2.53084 2.82929 3.11052 3.33003 3.41125 3.43319 4.20831 4.34468 4.41314 4.53547 4.72976 4.86476 4.90070 4.97910 5.16101 5.25903 5.30261 5.39402 5.46134 5.50753 5.54442 5.68726 5.75354 5.83523 5.92584 5.95059 6.19659 6.27608 6.39219 6.53713 6.58666 6.71179 6.78908 6.88864 7.27033 7.56943 7.59806 7.64789 7.73132 8.11471 8.29595 9.12384 9.73963 10.22511 11.21547 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034463 B = 0.003229 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.264091 B = 8670.511617 C = 9019.380330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.124 0.876 4 C 0.513 3.487 5 O -0.529 6.529 6 N -0.607 5.607 7 C 0.094 3.906 8 C -0.150 4.150 9 C 0.173 3.827 10 H 0.079 0.921 11 N -0.584 5.584 12 C 0.160 3.840 13 C -0.262 4.262 14 H 0.070 0.930 15 C 0.006 3.994 16 N -0.905 5.905 17 Si 0.907 3.093 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.085 3.915 22 N -0.354 5.354 23 C 0.072 3.928 24 C -0.278 4.278 25 C 0.046 3.954 26 N -0.294 5.294 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.025 0.975 35 H 0.054 0.946 36 H -0.002 1.002 37 H 0.253 0.747 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.169 0.831 41 H 0.146 0.854 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 0.585 19.162 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.142 0.858 4 C 0.299 3.701 5 O -0.405 6.405 6 N -0.342 5.342 7 C -0.029 4.029 8 C -0.191 4.191 9 C 0.063 3.937 10 H 0.097 0.903 11 N -0.304 5.304 12 C 0.016 3.984 13 C -0.391 4.391 14 H 0.088 0.912 15 C -0.193 4.193 16 N -0.549 5.549 17 Si 0.736 3.264 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.216 1.216 21 C -0.039 4.039 22 N -0.135 5.135 23 C -0.074 4.074 24 C -0.308 4.308 25 C -0.141 4.141 26 N -0.115 5.115 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.016 0.984 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.186 0.814 41 H 0.164 0.836 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.760 1.054 18.349 18.985 hybrid contribution 0.226 -0.779 -0.425 0.916 sum -4.534 0.275 17.924 18.490 Atomic orbital electron populations 1.22216 0.90552 1.04373 1.04965 1.21046 0.96162 0.97546 0.81210 0.85806 1.20255 0.80232 0.86100 0.83534 1.90751 1.42197 1.21979 1.85579 1.48427 1.61242 1.18795 1.05717 1.22269 0.97666 0.84003 0.98933 1.23204 1.02528 1.01955 0.91365 1.21407 0.96798 0.90382 0.85163 0.90283 1.43811 1.12032 1.71377 1.03193 1.20797 0.85901 0.96608 0.95129 1.19279 0.87351 1.45648 0.86823 0.91183 1.25036 0.96510 1.00037 0.97714 1.70069 1.17517 1.52423 1.14889 0.86155 0.81331 0.77388 0.81493 1.20195 1.21504 1.21635 1.23071 1.00888 0.98425 0.81498 1.48221 1.19588 1.24443 1.21295 1.22398 0.99865 0.90631 0.94510 1.21438 0.99408 1.06523 1.03402 1.23854 0.99058 0.94107 0.97074 1.77353 1.02071 1.24600 1.07439 0.88852 0.90838 0.90135 0.91581 0.91546 0.90277 0.90339 0.95695 0.92775 0.98357 0.93640 0.90891 0.91191 0.81368 0.83598 0.80093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.92 37.16 0.33 -0.97 16 2 C 0.15 1.73 3.12 -69.09 -0.22 1.51 16 3 H 0.12 1.31 7.97 -51.93 -0.41 0.89 16 4 C 0.51 8.00 7.17 -10.99 -0.08 7.92 16 5 O -0.53 -10.54 16.58 5.56 0.09 -10.45 16 6 N -0.61 -9.12 3.32 -170.52 -0.57 -9.69 16 7 C 0.09 1.14 6.12 -3.06 -0.02 1.12 16 8 C -0.15 -2.32 6.50 -24.89 -0.16 -2.48 16 9 C 0.17 3.32 3.55 -65.79 -0.23 3.09 16 10 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 11 N -0.58 -13.82 2.96 -171.04 -0.51 -14.33 16 12 C 0.16 3.70 7.63 59.84 0.46 4.16 16 13 C -0.26 -6.93 9.60 -15.06 -0.14 -7.08 16 14 H 0.07 1.84 7.86 -52.49 -0.41 1.42 16 15 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 16 N -0.90 -25.35 10.76 55.49 0.60 -24.76 16 17 Si 0.91 21.35 29.57 -169.99 -5.03 16.32 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 C 0.09 1.53 6.50 -2.53 -0.02 1.51 16 22 N -0.35 -4.75 3.07 -56.00 -0.17 -4.92 16 23 C 0.07 0.84 10.43 -17.23 -0.18 0.66 16 24 C -0.28 -3.07 10.80 -40.01 -0.43 -3.50 16 25 C 0.05 0.54 12.03 -17.36 -0.21 0.34 16 26 N -0.29 -4.32 12.58 30.63 0.39 -3.94 16 27 H 0.09 0.68 5.52 -51.93 -0.29 0.39 16 28 H 0.07 0.58 6.78 -51.93 -0.35 0.22 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.62 5.90 -51.93 -0.31 0.32 16 31 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 32 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 33 H 0.08 1.28 6.98 -51.93 -0.36 0.91 16 34 H 0.02 0.61 7.59 -51.93 -0.39 0.21 16 35 H 0.05 1.38 6.95 -51.93 -0.36 1.02 16 36 H 0.00 -0.04 6.39 -51.92 -0.33 -0.37 16 37 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 38 H 0.07 1.44 8.00 -51.93 -0.42 1.02 16 39 H 0.07 1.30 6.36 -51.93 -0.33 0.97 16 40 H 0.17 1.49 7.08 -52.49 -0.37 1.12 16 41 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 42 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -33.27 337.77 -7.10 -40.37 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.00 Total: -0.05 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.99 Total: 6.34 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.26 Total: -57.62 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.27 -7.10 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971119242.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.894 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds