Wall clock time and date at job start Tue Mar 31 2020 03:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47038 * 2 1 4 4 C 1.50694 * 109.47233 * 240.00188 * 2 1 3 5 5 O 1.21280 * 119.99998 * 248.97641 * 4 2 1 6 6 N 1.34782 * 120.00167 * 68.96930 * 4 2 1 7 7 C 1.47016 * 125.64534 * 4.06545 * 6 4 2 8 8 C 1.54336 * 107.26100 * 178.84869 * 7 6 4 9 9 C 1.55155 * 103.02487 * 338.13768 * 8 7 6 10 10 H 1.08999 * 111.00302 * 277.23575 * 9 8 7 11 11 N 1.46496 * 111.00811 * 153.38312 * 9 8 7 12 12 C 1.46495 * 119.99915 * 307.80938 * 11 9 8 13 13 C 1.36933 * 120.00055 * 127.80326 * 11 9 8 14 14 H 1.08000 * 119.99897 * 23.60443 * 13 11 9 15 15 C 1.38818 * 120.00172 * 203.60365 * 13 11 9 16 16 N 1.31613 * 119.99626 * 12.58577 * 15 13 11 17 17 Si 1.86801 * 120.00169 * 192.58712 * 15 13 11 18 18 H 1.48506 * 109.46891 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47059 * 120.00022 * 17 15 13 20 20 H 1.48497 * 109.46919 * 240.00078 * 17 15 13 21 21 C 1.47424 * 125.64715 * 184.36625 * 6 4 2 22 22 N 1.46498 * 109.47044 * 119.99874 * 2 1 3 23 23 C 1.34945 * 126.03701 * 35.00303 * 22 2 1 24 24 C 1.35313 * 107.74595 * 180.20427 * 23 22 2 25 25 C 1.39871 * 107.92236 * 359.64099 * 24 23 22 26 26 N 1.30839 * 108.19660 * 0.36388 * 25 24 23 27 27 H 1.09007 * 109.46951 * 67.49292 * 1 2 3 28 28 H 1.08993 * 109.47304 * 187.49340 * 1 2 3 29 29 H 1.09004 * 109.47519 * 307.49578 * 1 2 3 30 30 H 1.09001 * 109.88412 * 298.38532 * 7 6 4 31 31 H 1.08995 * 109.88897 * 59.56043 * 7 6 4 32 32 H 1.09008 * 110.84895 * 219.66529 * 8 7 6 33 33 H 1.09000 * 110.66862 * 96.52583 * 8 7 6 34 34 H 1.09002 * 109.47918 * 88.87185 * 12 11 9 35 35 H 1.08998 * 109.46981 * 208.87572 * 12 11 9 36 36 H 1.09008 * 109.47054 * 328.86728 * 12 11 9 37 37 H 0.97001 * 120.00029 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.36946 * 322.93688 * 21 6 4 39 39 H 1.09004 * 110.36412 * 85.14421 * 21 6 4 40 40 H 1.07998 * 126.12596 * 359.93485 * 23 22 2 41 41 H 1.08004 * 126.03965 * 179.76725 * 24 23 22 42 42 H 1.08000 * 125.90168 * 180.13781 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.5897 -1.7824 -1.1266 6 7 1.8621 -0.1543 -2.4463 7 6 1.2827 1.1712 -2.7088 8 6 1.3166 1.3915 -4.2360 9 6 2.4235 0.4113 -4.7062 10 1 3.4131 0.8516 -4.5836 11 7 2.2036 -0.0024 -6.0942 12 6 0.9037 -0.5419 -6.5005 13 6 3.2131 0.1153 -7.0119 14 1 4.2417 0.1382 -6.6833 15 6 2.9146 0.2053 -8.3646 16 7 1.6763 0.4264 -8.7518 17 14 4.2702 0.0123 -9.6352 18 1 5.5640 -0.2264 -8.9463 19 1 3.9596 -1.1396 -10.5193 20 1 4.3648 1.2503 -10.4499 21 6 2.2202 -0.7771 -3.7337 22 7 2.0183 -0.6906 1.1962 23 6 1.4402 -1.7559 1.7895 24 6 2.1939 -2.0897 2.8625 25 6 3.2740 -1.2031 2.9225 26 7 3.1681 -0.3620 1.9258 27 1 -0.3633 0.3934 -0.9495 28 1 -0.3633 -1.0188 0.1340 29 1 -0.3634 0.6255 0.8154 30 1 0.2538 1.2036 -2.3504 31 1 1.8749 1.9396 -2.2121 32 1 1.5862 2.4207 -4.4736 33 1 0.3569 1.1329 -4.6834 34 1 0.2532 0.2746 -6.8142 35 1 1.0414 -1.2358 -7.3298 36 1 0.4491 -1.0663 -5.6599 37 1 1.4676 0.4896 -9.6970 38 1 3.1430 -1.3487 -3.6349 39 1 1.4119 -1.4203 -4.0818 40 1 0.5354 -2.2504 1.4682 41 1 1.9974 -2.8992 3.5499 42 1 4.0578 -1.2091 3.6654 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971119242.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:10 Heat of formation + Delta-G solvation = 63.636844 kcal Electronic energy + Delta-G solvation = -23677.319415 eV Core-core repulsion = 20273.789796 eV Total energy + Delta-G solvation = -3403.529620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.30540 -41.06582 -38.99746 -36.64627 -35.61771 -33.47822 -31.46953 -31.01374 -30.53187 -29.25421 -28.07269 -26.35840 -24.89584 -23.81196 -22.15077 -21.83652 -20.99195 -20.26796 -18.97577 -18.45308 -18.22201 -17.54690 -16.57199 -16.40106 -15.99746 -15.45591 -15.37462 -14.97780 -14.90095 -14.55744 -14.36924 -14.31375 -13.99362 -13.89314 -13.52077 -13.34901 -13.14061 -12.94635 -12.87854 -12.63279 -12.51482 -12.38893 -12.17236 -12.08741 -11.86830 -11.65536 -11.43697 -11.22596 -10.66279 -10.38237 -9.78006 -9.52283 -8.80236 -7.88820 -5.35995 0.85086 1.34747 1.40635 1.44517 1.47283 1.56602 1.96525 1.99612 2.48681 3.19691 3.28949 3.50699 3.51915 3.76163 3.88066 3.92594 4.01187 4.12668 4.17089 4.24035 4.40828 4.49956 4.59958 4.65780 4.71743 4.75266 4.84996 4.89404 4.96985 5.08856 5.11938 5.16535 5.21773 5.30097 5.39896 5.60679 5.69482 5.74823 6.05133 6.29719 6.39879 6.75937 6.91545 7.11558 7.81128 8.24547 9.15576 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034463 B = 0.003229 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.264091 B = 8670.511617 C = 9019.380330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.152 3.848 3 H 0.138 0.862 4 C 0.510 3.490 5 O -0.581 6.581 6 N -0.605 5.605 7 C 0.100 3.900 8 C -0.140 4.140 9 C 0.165 3.835 10 H 0.068 0.932 11 N -0.601 5.601 12 C 0.178 3.822 13 C -0.270 4.270 14 H 0.066 0.934 15 C -0.044 4.044 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.098 3.902 22 N -0.367 5.367 23 C 0.061 3.939 24 C -0.284 4.284 25 C 0.040 3.960 26 N -0.340 5.340 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.009 0.991 35 H 0.021 0.979 36 H 0.027 0.973 37 H 0.250 0.750 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.193 0.807 41 H 0.171 0.829 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 1.340 21.192 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.156 0.844 4 C 0.298 3.702 5 O -0.461 6.461 6 N -0.338 5.338 7 C -0.022 4.022 8 C -0.179 4.179 9 C 0.056 3.944 10 H 0.087 0.913 11 N -0.322 5.322 12 C 0.033 3.967 13 C -0.400 4.400 14 H 0.084 0.916 15 C -0.240 4.240 16 N -0.577 5.577 17 Si 0.794 3.206 18 H -0.196 1.196 19 H -0.218 1.218 20 H -0.216 1.216 21 C -0.027 4.027 22 N -0.149 5.149 23 C -0.084 4.084 24 C -0.313 4.313 25 C -0.145 4.145 26 N -0.161 5.161 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.027 0.973 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.210 0.790 41 H 0.189 0.811 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.756 1.842 20.424 21.299 hybrid contribution 0.578 -1.067 -0.970 1.554 sum -5.178 0.775 19.454 20.146 Atomic orbital electron populations 1.22260 0.87355 1.05207 1.06524 1.21211 0.98366 0.97126 0.78735 0.84417 1.21075 0.79099 0.85582 0.84427 1.90723 1.44522 1.24465 1.86355 1.48446 1.61061 1.19634 1.04686 1.22456 1.00410 0.82850 0.96476 1.23037 1.00235 1.00918 0.93744 1.21516 0.97877 0.91844 0.83202 0.91336 1.43946 1.11536 1.72225 1.04520 1.20508 0.85721 0.95418 0.95021 1.19528 0.87999 1.44741 0.87764 0.91608 1.25701 0.98409 1.00538 0.99320 1.70195 1.18962 1.53745 1.14800 0.85231 0.79251 0.76931 0.79164 1.19570 1.21785 1.21567 1.22648 0.99423 0.97598 0.83038 1.48410 1.19604 1.25253 1.21648 1.22954 1.00686 0.90249 0.94519 1.21851 0.98868 1.06844 1.03696 1.24437 0.99780 0.93502 0.96822 1.77281 1.03449 1.26460 1.08905 0.87643 0.90674 0.87826 0.87574 0.88902 0.89664 0.90930 0.97320 0.95972 0.95505 0.94055 0.93591 0.91880 0.79032 0.81116 0.77510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 8.92 71.98 0.64 -1.24 16 2 C 0.15 3.18 3.12 44.24 0.14 3.31 16 3 H 0.14 2.47 7.97 -2.38 -0.02 2.45 16 4 C 0.51 15.22 7.17 87.65 0.63 15.85 16 5 O -0.58 -23.22 16.58 -3.03 -0.05 -23.27 16 6 N -0.60 -17.13 3.32 -811.79 -2.70 -19.83 16 7 C 0.10 2.05 6.12 86.73 0.53 2.58 16 8 C -0.14 -4.02 6.50 31.79 0.21 -3.81 16 9 C 0.16 6.28 3.55 46.38 0.16 6.44 16 10 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 11 N -0.60 -28.82 2.96 -695.04 -2.05 -30.87 16 12 C 0.18 8.34 7.63 127.77 0.98 9.31 16 13 C -0.27 -14.56 9.60 84.04 0.81 -13.75 16 14 H 0.07 3.51 7.86 -2.91 -0.02 3.49 16 15 C -0.04 -2.40 5.06 84.86 0.43 -1.97 16 16 N -0.93 -53.17 10.76 21.65 0.23 -52.93 16 17 Si 0.97 44.51 29.57 68.60 2.03 46.54 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 C 0.10 3.52 6.50 86.85 0.56 4.09 16 22 N -0.37 -9.20 3.07 -331.08 -1.02 -10.21 16 23 C 0.06 1.31 10.43 83.54 0.87 2.18 16 24 C -0.28 -5.68 10.80 21.99 0.24 -5.44 16 25 C 0.04 0.91 12.03 85.24 1.03 1.93 16 26 N -0.34 -9.61 12.58 -57.02 -0.72 -10.33 16 27 H 0.11 1.01 5.52 -2.38 -0.01 1.00 16 28 H 0.07 0.91 6.78 -2.39 -0.02 0.90 16 29 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.11 1.44 5.90 -2.39 -0.01 1.43 16 31 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 32 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.07 2.21 6.98 -2.39 -0.02 2.19 16 34 H 0.01 0.43 7.59 -2.39 -0.02 0.41 16 35 H 0.02 1.14 6.95 -2.39 -0.02 1.13 16 36 H 0.03 1.08 6.39 -2.38 -0.02 1.06 16 37 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.05 1.87 8.00 -2.39 -0.02 1.85 16 39 H 0.06 2.34 6.36 -2.39 -0.02 2.32 16 40 H 0.19 2.91 7.08 -2.91 -0.02 2.89 16 41 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 42 H 0.21 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -74.94 337.77 3.96 -70.97 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.02 Total: 10.44 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 7.22 Total: 19.48 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -6.26 Total: -124.17 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.05 Total: -23.27 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -74.94 3.96 -70.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971119242.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.611 kcal (2) G-P(sol) polarization free energy of solvation -74.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds