Wall clock time and date at job start Tue Mar 31 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46517 * 2 1 4 4 C 1.50701 * 109.46960 * 119.99584 * 2 1 3 5 5 O 1.21284 * 119.99944 * 34.11736 * 4 2 1 6 6 N 1.34772 * 119.99901 * 214.11036 * 4 2 1 7 7 C 1.47018 * 125.64801 * 4.63916 * 6 4 2 8 8 C 1.54342 * 107.26315 * 178.84883 * 7 6 4 9 9 C 1.55160 * 103.02028 * 338.13779 * 8 7 6 10 10 H 1.09005 * 111.03474 * 277.22285 * 9 8 7 11 11 N 1.46500 * 111.00217 * 153.38525 * 9 8 7 12 12 C 1.46503 * 119.99618 * 307.80161 * 11 9 8 13 13 C 1.36929 * 119.99871 * 127.80412 * 11 9 8 14 14 H 1.07997 * 120.00395 * 24.29588 * 13 11 9 15 15 C 1.38814 * 120.00065 * 204.28534 * 13 11 9 16 16 N 1.31621 * 119.99578 * 9.94827 * 15 13 11 17 17 Si 1.86799 * 120.00464 * 189.93869 * 15 13 11 18 18 H 1.48505 * 109.46833 * 90.00500 * 17 15 13 19 19 H 1.48494 * 109.47240 * 210.00672 * 17 15 13 20 20 H 1.48503 * 109.46750 * 330.00411 * 17 15 13 21 21 C 1.47429 * 125.64787 * 184.94231 * 6 4 2 22 22 N 1.46491 * 109.46933 * 240.00175 * 2 1 3 23 23 C 1.34947 * 126.03921 * 324.99618 * 22 2 1 24 24 C 1.35312 * 107.74742 * 179.97438 * 23 22 2 25 25 C 1.39871 * 107.92099 * 359.97438 * 24 23 22 26 26 N 1.30826 * 108.20068 * 359.74285 * 25 24 23 27 27 H 1.09001 * 109.47004 * 176.00612 * 1 2 3 28 28 H 1.08998 * 109.47028 * 296.00861 * 1 2 3 29 29 H 1.08999 * 109.47259 * 56.00422 * 1 2 3 30 30 H 1.08992 * 109.88406 * 298.38803 * 7 6 4 31 31 H 1.09005 * 109.88459 * 59.55982 * 7 6 4 32 32 H 1.09006 * 110.84729 * 219.67432 * 8 7 6 33 33 H 1.08994 * 110.66811 * 96.52283 * 8 7 6 34 34 H 1.09005 * 109.46946 * 86.04290 * 12 11 9 35 35 H 1.09003 * 109.47015 * 206.03811 * 12 11 9 36 36 H 1.08996 * 109.47284 * 326.04336 * 12 11 9 37 37 H 0.97007 * 119.99955 * 180.02562 * 16 15 13 38 38 H 1.09004 * 110.36705 * 322.93669 * 21 6 4 39 39 H 1.08999 * 110.36313 * 85.14442 * 21 6 4 40 40 H 1.07998 * 126.12723 * 359.95925 * 23 22 2 41 41 H 1.08005 * 126.04066 * 180.02562 * 24 23 22 42 42 H 1.08004 * 125.89457 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.4146 -1.6513 1.6822 6 7 3.1680 -0.3000 1.8290 7 6 3.9600 0.8784 1.4477 8 6 5.1497 0.9671 2.4270 9 6 4.6552 0.1539 3.6524 10 1 4.0284 0.7660 4.3010 11 7 5.7830 -0.4109 4.3975 12 6 6.8015 -1.1988 3.6987 13 6 5.8852 -0.2025 5.7469 14 1 5.0013 0.0139 6.3284 15 6 7.1250 -0.2695 6.3677 16 7 8.2213 -0.3373 5.6424 17 14 7.2377 -0.2631 8.2323 18 1 7.1873 -1.6592 8.7360 19 1 8.5159 0.3676 8.6488 20 1 6.0993 0.5074 8.7942 21 6 3.8253 -0.9622 2.9705 22 7 2.0183 -0.6905 -1.1961 23 6 1.4402 -1.7558 -1.7895 24 6 2.1961 -2.0921 -2.8602 25 6 3.2727 -1.2015 -2.9238 26 7 3.1639 -0.3574 -1.9303 27 1 -0.3633 -1.0252 -0.0716 28 1 -0.3633 0.4506 0.9236 29 1 -0.3634 0.5746 -0.8520 30 1 4.3252 0.7652 0.4271 31 1 3.3488 1.7775 1.5274 32 1 5.3467 2.0025 2.7053 33 1 6.0393 0.5097 1.9940 34 1 7.5610 -0.5314 3.2914 35 1 7.2660 -1.8941 4.3979 36 1 6.3353 -1.7571 2.8869 37 1 9.0877 -0.3845 6.0761 38 1 3.0798 -1.3563 3.6612 39 1 4.4777 -1.7623 2.6206 40 1 0.5363 -2.2514 -1.4673 41 1 2.0019 -2.9042 -3.5452 42 1 4.0562 -1.2073 -3.6671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971119244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:14 Heat of formation + Delta-G solvation = 82.004246 kcal Electronic energy + Delta-G solvation = -23861.488380 eV Core-core repulsion = 20458.755231 eV Total energy + Delta-G solvation = -3402.733150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43248 -39.81806 -37.63671 -34.89046 -34.55377 -31.68957 -30.24403 -29.80630 -29.62805 -28.10066 -26.09387 -25.14615 -23.32738 -22.37587 -21.26778 -20.97570 -19.37095 -19.06760 -17.53236 -17.22477 -17.05331 -15.99741 -15.39219 -14.90215 -14.62602 -14.40254 -13.95644 -13.69550 -13.52927 -13.38112 -13.01759 -12.90801 -12.63306 -12.60240 -12.47658 -12.28329 -11.95478 -11.81026 -11.38104 -10.95122 -10.85339 -10.80309 -10.54119 -10.45475 -10.27881 -10.21999 -9.94727 -9.88008 -9.42299 -8.69081 -8.60538 -8.43885 -6.83272 -5.81733 -3.28914 1.67784 1.95818 2.76335 2.90460 3.08632 3.34970 3.41540 3.42513 4.22753 4.31082 4.43200 4.63113 4.76873 4.86047 4.99469 5.20026 5.24354 5.30658 5.37799 5.43457 5.49286 5.54900 5.60232 5.75624 5.76174 5.88267 5.90198 5.99052 6.22654 6.36067 6.44431 6.52311 6.58895 6.79157 6.82750 6.83926 7.32702 7.57362 7.61584 7.64711 7.74966 8.09381 8.33441 9.15400 9.76589 10.26059 11.24453 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029233 B = 0.003562 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.593529 B = 7858.961806 C = 8263.863189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.117 0.883 4 C 0.515 3.485 5 O -0.536 6.536 6 N -0.599 5.599 7 C 0.097 3.903 8 C -0.149 4.149 9 C 0.174 3.826 10 H 0.079 0.921 11 N -0.584 5.584 12 C 0.160 3.840 13 C -0.262 4.262 14 H 0.070 0.930 15 C 0.006 3.994 16 N -0.906 5.906 17 Si 0.908 3.092 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.083 3.917 22 N -0.362 5.362 23 C 0.066 3.934 24 C -0.277 4.277 25 C 0.047 3.953 26 N -0.292 5.292 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.021 0.979 35 H 0.061 0.939 36 H -0.005 1.005 37 H 0.254 0.746 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.173 0.827 41 H 0.148 0.852 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 1.474 -15.593 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.135 0.865 4 C 0.300 3.700 5 O -0.413 6.413 6 N -0.332 5.332 7 C -0.026 4.026 8 C -0.189 4.189 9 C 0.063 3.937 10 H 0.097 0.903 11 N -0.304 5.304 12 C 0.016 3.984 13 C -0.391 4.391 14 H 0.088 0.912 15 C -0.193 4.193 16 N -0.550 5.550 17 Si 0.738 3.262 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.041 4.041 22 N -0.146 5.146 23 C -0.080 4.080 24 C -0.306 4.306 25 C -0.140 4.140 26 N -0.112 5.112 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.014 0.986 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.190 0.810 41 H 0.165 0.835 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.492 2.013 -14.560 19.289 hybrid contribution -0.027 -0.703 0.477 0.850 sum -12.519 1.309 -14.083 18.888 Atomic orbital electron populations 1.22021 0.90412 1.04532 1.03992 1.21276 0.96516 0.97579 0.80492 0.86498 1.20216 0.80353 0.84643 0.84804 1.90707 1.56394 1.28798 1.65372 1.48498 1.23035 1.28434 1.33232 1.22201 0.93455 0.87139 0.99842 1.23183 0.96633 1.02288 0.96834 1.21408 0.90020 0.91088 0.91188 0.90292 1.43804 1.23905 1.57762 1.04974 1.20815 0.89889 0.93918 0.93823 1.19245 0.92562 1.44637 0.82657 0.91240 1.25068 0.95374 1.00618 0.98231 1.70064 0.97016 1.54205 1.33711 0.86198 0.77097 0.77785 0.85091 1.21367 1.21646 1.20400 1.23085 0.96273 0.97920 0.86842 1.48478 1.20119 1.24563 1.21441 1.22545 1.00006 0.90769 0.94669 1.21498 0.99272 1.06481 1.03343 1.23917 0.99083 0.93805 0.97151 1.77400 1.02346 1.24087 1.07398 0.90338 0.89504 0.90689 0.91025 0.91813 0.90347 0.90423 0.96100 0.92076 0.98639 0.93578 0.90794 0.91276 0.81013 0.83471 0.79943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.50 37.16 0.32 -1.04 16 2 C 0.15 1.75 3.42 -69.08 -0.24 1.51 16 3 H 0.12 1.24 6.96 -51.93 -0.36 0.88 16 4 C 0.52 8.10 7.18 -10.99 -0.08 8.02 16 5 O -0.54 -9.98 16.57 5.55 0.09 -9.89 16 6 N -0.60 -9.78 3.33 -170.51 -0.57 -10.34 16 7 C 0.10 1.38 6.01 -3.06 -0.02 1.37 16 8 C -0.15 -2.54 6.50 -24.88 -0.16 -2.71 16 9 C 0.17 3.47 3.55 -65.78 -0.23 3.23 16 10 H 0.08 1.57 7.96 -51.93 -0.41 1.16 16 11 N -0.58 -14.27 2.96 -171.03 -0.51 -14.77 16 12 C 0.16 3.88 7.71 59.85 0.46 4.34 16 13 C -0.26 -7.02 9.61 -15.06 -0.14 -7.17 16 14 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 15 C 0.01 0.16 5.10 -17.43 -0.09 0.07 16 16 N -0.91 -25.81 10.67 55.49 0.59 -25.22 16 17 Si 0.91 21.49 29.57 -169.99 -5.03 16.46 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.08 1.57 6.51 -2.53 -0.02 1.55 16 22 N -0.36 -4.62 3.51 -56.00 -0.20 -4.81 16 23 C 0.07 0.74 10.58 -17.23 -0.18 0.56 16 24 C -0.28 -2.90 10.80 -40.01 -0.43 -3.33 16 25 C 0.05 0.53 12.03 -17.37 -0.21 0.32 16 26 N -0.29 -3.97 12.57 30.62 0.39 -3.59 16 27 H 0.08 0.73 6.80 -51.93 -0.35 0.37 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.76 7.91 -51.93 -0.41 0.35 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.44 6.91 -51.93 -0.36 1.08 16 34 H 0.02 0.53 7.62 -51.93 -0.40 0.14 16 35 H 0.06 1.62 6.72 -51.93 -0.35 1.28 16 36 H 0.00 -0.10 6.37 -51.93 -0.33 -0.44 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.07 1.46 7.99 -51.93 -0.42 1.04 16 39 H 0.07 1.40 6.34 -51.93 -0.33 1.08 16 40 H 0.17 1.53 7.16 -52.49 -0.38 1.16 16 41 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 42 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -32.12 341.59 -7.28 -39.40 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.18 Total: 0.89 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.02 Total: 6.73 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.29 Total: -58.74 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.12 -7.28 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971119244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.401 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds