Wall clock time and date at job start Tue Mar 31 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46517 * 2 1 4 4 C 1.50701 * 109.46960 * 119.99584 * 2 1 3 5 5 O 1.21284 * 119.99944 * 34.11736 * 4 2 1 6 6 N 1.34772 * 119.99901 * 214.11036 * 4 2 1 7 7 C 1.47018 * 125.64801 * 4.63916 * 6 4 2 8 8 C 1.54342 * 107.26315 * 178.84883 * 7 6 4 9 9 C 1.55160 * 103.02028 * 338.13779 * 8 7 6 10 10 H 1.09005 * 111.03474 * 277.22285 * 9 8 7 11 11 N 1.46500 * 111.00217 * 153.38525 * 9 8 7 12 12 C 1.46503 * 119.99618 * 307.80161 * 11 9 8 13 13 C 1.36929 * 119.99871 * 127.80412 * 11 9 8 14 14 H 1.07997 * 120.00395 * 24.29588 * 13 11 9 15 15 C 1.38814 * 120.00065 * 204.28534 * 13 11 9 16 16 N 1.31621 * 119.99578 * 9.94827 * 15 13 11 17 17 Si 1.86799 * 120.00464 * 189.93869 * 15 13 11 18 18 H 1.48505 * 109.46833 * 90.00500 * 17 15 13 19 19 H 1.48494 * 109.47240 * 210.00672 * 17 15 13 20 20 H 1.48503 * 109.46750 * 330.00411 * 17 15 13 21 21 C 1.47429 * 125.64787 * 184.94231 * 6 4 2 22 22 N 1.46491 * 109.46933 * 240.00175 * 2 1 3 23 23 C 1.34947 * 126.03921 * 324.99618 * 22 2 1 24 24 C 1.35312 * 107.74742 * 179.97438 * 23 22 2 25 25 C 1.39871 * 107.92099 * 359.97438 * 24 23 22 26 26 N 1.30826 * 108.20068 * 359.74285 * 25 24 23 27 27 H 1.09001 * 109.47004 * 176.00612 * 1 2 3 28 28 H 1.08998 * 109.47028 * 296.00861 * 1 2 3 29 29 H 1.08999 * 109.47259 * 56.00422 * 1 2 3 30 30 H 1.08992 * 109.88406 * 298.38803 * 7 6 4 31 31 H 1.09005 * 109.88459 * 59.55982 * 7 6 4 32 32 H 1.09006 * 110.84729 * 219.67432 * 8 7 6 33 33 H 1.08994 * 110.66811 * 96.52283 * 8 7 6 34 34 H 1.09005 * 109.46946 * 86.04290 * 12 11 9 35 35 H 1.09003 * 109.47015 * 206.03811 * 12 11 9 36 36 H 1.08996 * 109.47284 * 326.04336 * 12 11 9 37 37 H 0.97007 * 119.99955 * 180.02562 * 16 15 13 38 38 H 1.09004 * 110.36705 * 322.93669 * 21 6 4 39 39 H 1.08999 * 110.36313 * 85.14442 * 21 6 4 40 40 H 1.07998 * 126.12723 * 359.95925 * 23 22 2 41 41 H 1.08005 * 126.04066 * 180.02562 * 24 23 22 42 42 H 1.08004 * 125.89457 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.4146 -1.6513 1.6822 6 7 3.1680 -0.3000 1.8290 7 6 3.9600 0.8784 1.4477 8 6 5.1497 0.9671 2.4270 9 6 4.6552 0.1539 3.6524 10 1 4.0284 0.7660 4.3010 11 7 5.7830 -0.4109 4.3975 12 6 6.8015 -1.1988 3.6987 13 6 5.8852 -0.2025 5.7469 14 1 5.0013 0.0139 6.3284 15 6 7.1250 -0.2695 6.3677 16 7 8.2213 -0.3373 5.6424 17 14 7.2377 -0.2631 8.2323 18 1 7.1873 -1.6592 8.7360 19 1 8.5159 0.3676 8.6488 20 1 6.0993 0.5074 8.7942 21 6 3.8253 -0.9622 2.9705 22 7 2.0183 -0.6905 -1.1961 23 6 1.4402 -1.7558 -1.7895 24 6 2.1961 -2.0921 -2.8602 25 6 3.2727 -1.2015 -2.9238 26 7 3.1639 -0.3574 -1.9303 27 1 -0.3633 -1.0252 -0.0716 28 1 -0.3633 0.4506 0.9236 29 1 -0.3634 0.5746 -0.8520 30 1 4.3252 0.7652 0.4271 31 1 3.3488 1.7775 1.5274 32 1 5.3467 2.0025 2.7053 33 1 6.0393 0.5097 1.9940 34 1 7.5610 -0.5314 3.2914 35 1 7.2660 -1.8941 4.3979 36 1 6.3353 -1.7571 2.8869 37 1 9.0877 -0.3845 6.0761 38 1 3.0798 -1.3563 3.6612 39 1 4.4777 -1.7623 2.6206 40 1 0.5363 -2.2514 -1.4673 41 1 2.0019 -2.9042 -3.5452 42 1 4.0562 -1.2073 -3.6671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971119244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:14 Heat of formation + Delta-G solvation = 61.753227 kcal Electronic energy + Delta-G solvation = -23862.366531 eV Core-core repulsion = 20458.755231 eV Total energy + Delta-G solvation = -3403.611300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.33405 -41.07213 -39.10234 -36.65223 -35.51222 -33.49709 -31.43021 -31.05474 -30.45061 -29.57777 -28.11032 -26.34400 -24.73046 -23.88634 -22.21060 -21.88260 -21.02228 -20.13965 -18.99019 -18.70471 -18.17494 -17.59086 -16.74352 -16.30067 -15.90766 -15.44139 -15.24553 -15.20371 -14.86780 -14.48527 -14.43015 -14.31292 -13.99412 -13.75864 -13.50984 -13.37578 -13.20633 -13.04786 -12.84874 -12.67467 -12.47621 -12.39668 -12.21015 -12.12765 -11.87794 -11.70316 -11.51433 -11.37965 -10.65391 -10.38194 -9.81724 -9.55818 -8.81950 -7.88701 -5.37860 0.72113 1.02565 1.46762 1.48168 1.56614 1.75442 1.94863 1.96459 2.48770 3.18079 3.29602 3.41145 3.47741 3.80557 3.86762 3.93742 3.99874 4.11379 4.13389 4.24867 4.35595 4.53376 4.60620 4.64289 4.70208 4.70900 4.83630 4.85638 4.92895 5.01936 5.10394 5.14821 5.15270 5.25140 5.34529 5.58714 5.65817 5.72721 6.01057 6.29357 6.34759 6.71773 6.85142 7.10103 7.78716 8.24375 9.16344 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029233 B = 0.003562 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.593529 B = 7858.961806 C = 8263.863189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.154 3.846 3 H 0.132 0.868 4 C 0.512 3.488 5 O -0.570 6.570 6 N -0.603 5.603 7 C 0.108 3.892 8 C -0.140 4.140 9 C 0.169 3.831 10 H 0.080 0.920 11 N -0.601 5.601 12 C 0.180 3.820 13 C -0.271 4.271 14 H 0.073 0.927 15 C -0.046 4.046 16 N -0.936 5.936 17 Si 0.971 3.029 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.267 1.267 21 C 0.096 3.904 22 N -0.374 5.374 23 C 0.053 3.947 24 C -0.278 4.278 25 C 0.043 3.957 26 N -0.327 5.327 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.003 0.997 35 H 0.031 0.969 36 H 0.015 0.985 37 H 0.250 0.750 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.190 0.810 41 H 0.171 0.829 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 2.320 -16.823 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.048 3.952 3 H 0.150 0.850 4 C 0.299 3.701 5 O -0.448 6.448 6 N -0.336 5.336 7 C -0.014 4.014 8 C -0.179 4.179 9 C 0.060 3.940 10 H 0.098 0.902 11 N -0.322 5.322 12 C 0.035 3.965 13 C -0.401 4.401 14 H 0.090 0.910 15 C -0.241 4.241 16 N -0.581 5.581 17 Si 0.799 3.201 18 H -0.215 1.215 19 H -0.220 1.220 20 H -0.192 1.192 21 C -0.029 4.029 22 N -0.158 5.158 23 C -0.091 4.091 24 C -0.307 4.307 25 C -0.144 4.144 26 N -0.147 5.147 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.021 0.979 35 H 0.050 0.950 36 H 0.033 0.967 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.207 0.793 41 H 0.189 0.811 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -14.161 2.879 -15.828 21.432 hybrid contribution 0.433 -1.032 0.780 1.364 sum -13.728 1.848 -15.047 20.452 Atomic orbital electron populations 1.22053 0.88172 1.04801 1.05382 1.21333 0.98084 0.97381 0.78385 0.85006 1.21031 0.79433 0.84219 0.85428 1.90686 1.57298 1.30373 1.66451 1.48577 1.23530 1.28868 1.32585 1.22209 0.92569 0.87652 0.98994 1.23021 0.97095 1.02012 0.95806 1.21521 0.88793 0.91709 0.92010 0.90171 1.43951 1.24820 1.58559 1.04866 1.20483 0.89667 0.93036 0.93338 1.19569 0.92699 1.43751 0.84045 0.90970 1.25800 0.95132 1.00949 1.02264 1.70214 0.97203 1.55600 1.35126 0.85211 0.77048 0.77538 0.80276 1.21477 1.21965 1.19164 1.22669 0.95564 0.97097 0.87594 1.48581 1.20344 1.25290 1.21625 1.23019 1.00750 0.90516 0.94855 1.21875 0.98661 1.06719 1.03414 1.24481 0.99722 0.93204 0.96953 1.77347 1.03244 1.25552 1.08578 0.90804 0.88825 0.88366 0.90416 0.88305 0.89298 0.92130 0.97907 0.95018 0.96705 0.94082 0.92147 0.93168 0.79267 0.81108 0.77439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.50 71.98 0.61 -1.62 16 2 C 0.15 3.30 3.42 44.25 0.15 3.46 16 3 H 0.13 2.39 6.96 -2.39 -0.02 2.38 16 4 C 0.51 15.41 7.18 87.66 0.63 16.04 16 5 O -0.57 -20.88 16.57 -3.04 -0.05 -20.93 16 6 N -0.60 -18.94 3.33 -811.77 -2.70 -21.64 16 7 C 0.11 2.85 6.01 86.74 0.52 3.37 16 8 C -0.14 -4.61 6.50 31.79 0.21 -4.40 16 9 C 0.17 6.69 3.55 46.38 0.16 6.86 16 10 H 0.08 3.15 7.96 -2.38 -0.02 3.13 16 11 N -0.60 -29.75 2.96 -695.01 -2.06 -31.80 16 12 C 0.18 8.96 7.71 127.77 0.99 9.94 16 13 C -0.27 -14.65 9.61 84.04 0.81 -13.85 16 14 H 0.07 3.78 7.85 -2.91 -0.02 3.76 16 15 C -0.05 -2.53 5.10 84.86 0.43 -2.10 16 16 N -0.94 -54.48 10.67 21.65 0.23 -54.25 16 17 Si 0.97 44.51 29.57 68.60 2.03 46.53 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 C 0.10 3.63 6.51 86.85 0.57 4.19 16 22 N -0.37 -8.77 3.51 -331.08 -1.16 -9.93 16 23 C 0.05 1.09 10.58 83.54 0.88 1.97 16 24 C -0.28 -5.16 10.80 21.99 0.24 -4.92 16 25 C 0.04 0.87 12.03 85.24 1.02 1.90 16 26 N -0.33 -8.27 12.57 -57.03 -0.72 -8.98 16 27 H 0.07 1.21 6.80 -2.39 -0.02 1.20 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.10 1.98 7.91 -2.38 -0.02 1.96 16 32 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 33 H 0.06 2.22 6.91 -2.39 -0.02 2.20 16 34 H 0.00 0.14 7.62 -2.38 -0.02 0.12 16 35 H 0.03 1.73 6.72 -2.39 -0.02 1.71 16 36 H 0.01 0.66 6.37 -2.39 -0.02 0.65 16 37 H 0.25 14.16 8.31 -92.70 -0.77 13.38 16 38 H 0.06 2.42 7.99 -2.39 -0.02 2.40 16 39 H 0.05 2.07 6.34 -2.39 -0.02 2.06 16 40 H 0.19 2.97 7.16 -2.91 -0.02 2.95 16 41 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 42 H 0.21 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -70.08 341.59 3.81 -66.27 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.01 Total: 13.87 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 7.22 Total: 20.85 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -6.40 Total: -126.60 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.08 3.81 -66.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971119244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.023 kcal (2) G-P(sol) polarization free energy of solvation -70.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds