Wall clock time and date at job start Tue Mar 31 2020 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47065 * 2 1 4 4 C 1.35401 * 126.44285 * 265.00220 * 3 2 1 5 5 C 1.35559 * 107.16178 * 179.97438 * 4 3 2 6 6 N 1.33096 * 108.34984 * 359.77755 * 5 4 3 7 7 C 1.31609 * 109.09644 * 0.36904 * 6 5 4 8 8 C 1.47408 * 125.86858 * 179.89770 * 7 6 5 9 9 O 1.21602 * 120.00589 * 179.69613 * 8 7 6 10 10 N 1.34778 * 119.99649 * 359.68741 * 8 7 6 11 11 C 1.47022 * 125.65027 * 359.97438 * 10 8 7 12 12 C 1.54321 * 107.27483 * 178.97223 * 11 10 8 13 13 C 1.55154 * 103.10325 * 337.72147 * 12 11 10 14 14 H 1.08994 * 111.00657 * 277.51335 * 13 12 11 15 15 N 1.46505 * 111.00518 * 153.66145 * 13 12 11 16 16 C 1.46501 * 119.99777 * 300.00167 * 15 13 12 17 17 C 1.36927 * 120.00183 * 120.00251 * 15 13 12 18 18 H 1.08000 * 119.99769 * 323.53062 * 17 15 13 19 19 C 1.38815 * 120.00450 * 143.52611 * 17 15 13 20 20 N 1.31616 * 120.00167 * 157.90958 * 19 17 15 21 21 Si 1.86800 * 119.99841 * 337.91717 * 19 17 15 22 22 H 1.48498 * 109.47088 * 95.66704 * 21 19 17 23 23 H 1.48501 * 109.47062 * 215.67065 * 21 19 17 24 24 H 1.48501 * 109.47304 * 335.66945 * 21 19 17 25 25 C 1.47424 * 125.65229 * 180.02562 * 10 8 7 26 26 H 1.09000 * 109.47077 * 300.00105 * 1 2 3 27 27 H 1.09002 * 109.46691 * 59.99774 * 1 2 3 28 28 H 1.08997 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47266 * 240.00617 * 2 1 3 30 30 H 1.08992 * 109.47154 * 120.00007 * 2 1 3 31 31 H 1.08002 * 126.41350 * 359.97438 * 4 3 2 32 32 H 1.07996 * 125.82410 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.88208 * 59.55858 * 11 10 8 34 34 H 1.09001 * 110.01607 * 298.46934 * 11 10 8 35 35 H 1.09004 * 110.71937 * 96.17394 * 12 11 10 36 36 H 1.09000 * 110.72704 * 219.26672 * 12 11 10 37 37 H 1.09001 * 109.47338 * 85.95310 * 16 15 13 38 38 H 1.09004 * 109.47287 * 205.95924 * 16 15 13 39 39 H 1.09004 * 109.47409 * 325.95274 * 16 15 13 40 40 H 0.97000 * 120.00244 * 180.02562 * 20 19 17 41 41 H 1.09004 * 110.36601 * 322.93363 * 25 10 8 42 42 H 1.09001 * 110.36995 * 85.25244 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3759 2.1079 -1.0851 5 6 2.7651 3.3275 -0.6392 6 7 2.6437 3.3475 0.6860 7 6 2.1981 2.1787 1.0953 8 6 1.9323 1.7972 2.4941 9 8 1.5148 0.6847 2.7522 10 7 2.1524 2.6815 3.4871 11 6 2.6541 4.0531 3.3176 12 6 2.7210 4.6932 4.7202 13 6 1.7181 3.8424 5.5433 14 1 0.6955 4.1869 5.3898 15 7 2.0653 3.8526 6.9666 16 6 3.3672 3.3448 7.4066 17 6 1.1730 4.3365 7.8856 18 1 0.5498 5.1834 7.6390 19 6 1.0694 3.7387 9.1341 20 7 0.5715 4.4143 10.1480 21 14 1.6368 1.9753 9.3753 22 1 3.0273 1.9697 9.8963 23 1 0.7417 1.2957 10.3459 24 1 1.5924 1.2588 8.0753 25 6 1.9309 2.4335 4.9234 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.3549 1.7777 -2.1132 32 1 3.1113 4.1446 -1.2547 33 1 1.9735 4.6210 2.6831 34 1 3.6481 4.0342 2.8708 35 1 3.7263 4.6116 5.1337 36 1 2.4039 5.7354 4.6841 37 1 4.1084 4.1414 7.3425 38 1 3.2929 2.9996 8.4379 39 1 3.6689 2.5154 6.7668 40 1 0.4994 3.9966 11.0205 41 1 1.0437 1.8173 5.0695 42 1 2.8043 1.9531 5.3645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971426722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:25 Heat of formation + Delta-G solvation = 69.979297 kcal Electronic energy + Delta-G solvation = -23943.920264 eV Core-core repulsion = 20540.665674 eV Total energy + Delta-G solvation = -3403.254590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.41589 -39.53828 -37.51105 -35.42048 -34.75660 -31.89977 -30.75166 -30.28973 -29.61211 -27.99726 -26.26147 -24.76833 -23.88460 -22.55072 -21.80176 -21.42263 -19.39064 -19.13513 -17.37162 -17.04150 -16.52077 -16.25605 -15.67719 -15.29500 -14.90707 -14.77302 -14.07864 -13.87667 -13.80120 -13.65225 -13.30364 -12.87144 -12.81419 -12.51241 -12.36993 -12.30713 -12.27242 -11.88072 -11.74410 -11.52837 -10.83620 -10.73709 -10.53225 -10.26925 -10.11942 -10.03277 -9.96956 -9.87826 -9.60894 -8.77569 -8.56106 -8.34887 -6.89297 -6.03606 -3.46075 1.30463 2.28052 2.53291 3.20550 3.30319 3.42038 3.46946 3.52105 4.22658 4.39374 4.49173 4.52861 4.72885 4.86588 4.99037 5.04516 5.17971 5.23573 5.28942 5.37228 5.44852 5.48685 5.59419 5.74301 5.83248 5.83917 6.00364 6.09708 6.21436 6.27874 6.38182 6.41924 6.47080 6.53312 6.65436 6.69859 6.75943 6.84121 7.58713 7.71033 7.98545 8.19087 8.32845 8.91424 9.65249 10.03949 11.11502 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.003965 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.165926 B = 7060.022739 C = 7680.845364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.415 5.415 4 C -0.035 4.035 5 C -0.032 4.032 6 N -0.441 5.441 7 C 0.151 3.849 8 C 0.612 3.388 9 O -0.548 6.548 10 N -0.587 5.587 11 C 0.115 3.885 12 C -0.153 4.153 13 C 0.172 3.828 14 H 0.089 0.911 15 N -0.594 5.594 16 C 0.106 3.894 17 C -0.274 4.274 18 H 0.083 0.917 19 C 0.037 3.963 20 N -0.897 5.897 21 Si 0.881 3.119 22 H -0.286 1.286 23 H -0.301 1.301 24 H -0.268 1.268 25 C 0.083 3.917 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.180 0.820 32 H 0.176 0.824 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.020 0.980 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.264 0.736 41 H 0.077 0.923 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 -5.741 -23.216 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.096 5.096 4 C -0.173 4.173 5 C -0.185 4.185 6 N -0.162 5.162 7 C -0.109 4.109 8 C 0.398 3.602 9 O -0.427 6.427 10 N -0.319 5.319 11 C -0.007 4.007 12 C -0.194 4.194 13 C 0.063 3.937 14 H 0.107 0.893 15 N -0.316 5.316 16 C -0.038 4.038 17 C -0.402 4.402 18 H 0.100 0.900 19 C -0.164 4.164 20 N -0.538 5.538 21 Si 0.711 3.289 22 H -0.214 1.214 23 H -0.229 1.229 24 H -0.193 1.193 25 C -0.041 4.041 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.197 0.803 32 H 0.193 0.807 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.038 0.962 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.130 -5.898 -22.314 23.447 hybrid contribution 0.210 -1.668 -0.508 1.756 sum 4.340 -7.566 -22.822 24.432 Atomic orbital electron populations 1.22064 0.93507 1.03402 1.03084 1.22113 0.96410 0.78832 1.05204 1.45289 1.45274 1.12915 1.06132 1.22878 1.07237 0.94220 0.92981 1.22456 1.07337 0.97394 0.91291 1.70376 1.15188 1.18457 1.12190 1.22659 1.09738 0.88291 0.90175 1.16063 0.78751 0.83954 0.81426 1.90784 1.48009 1.20496 1.83372 1.48089 1.62622 1.14276 1.06886 1.22115 0.99784 0.81010 0.97833 1.23222 1.01901 1.00476 0.93758 1.21716 0.97503 0.90261 0.84261 0.89313 1.43985 1.13223 1.73163 1.01197 1.21377 0.87638 0.96351 0.98468 1.18808 1.17922 1.10280 0.93197 0.89982 1.25468 0.97301 0.97535 0.96072 1.69857 1.47519 1.36098 1.00322 0.86887 0.76827 0.87366 0.77773 1.21403 1.22914 1.19283 1.23238 1.01884 1.01596 0.77391 0.91158 0.92354 0.90357 0.89135 0.87216 0.80289 0.80674 0.90720 0.91126 0.90833 0.90184 0.96172 0.93325 0.95001 0.92571 0.90433 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 10.23 37.16 0.38 -1.07 16 2 C 0.10 0.89 6.18 -4.04 -0.02 0.87 16 3 N -0.42 -4.78 2.76 -114.59 -0.32 -5.10 16 4 C -0.03 -0.32 11.53 -16.93 -0.20 -0.51 16 5 C -0.03 -0.33 11.85 -17.96 -0.21 -0.55 16 6 N -0.44 -6.11 8.67 -11.26 -0.10 -6.21 16 7 C 0.15 2.20 7.65 -154.53 -1.18 1.02 16 8 C 0.61 10.36 7.84 -12.53 -0.10 10.26 16 9 O -0.55 -10.13 14.76 5.28 0.08 -10.05 16 10 N -0.59 -9.91 3.33 -171.48 -0.57 -10.48 16 11 C 0.12 1.72 5.53 -3.07 -0.02 1.71 16 12 C -0.15 -2.46 6.53 -24.90 -0.16 -2.62 16 13 C 0.17 3.34 3.57 -65.52 -0.23 3.11 16 14 H 0.09 1.77 7.96 -51.93 -0.41 1.36 16 15 N -0.59 -13.76 2.55 -170.73 -0.43 -14.20 16 16 C 0.11 2.27 8.43 59.85 0.50 2.78 16 17 C -0.27 -7.50 9.88 -15.06 -0.15 -7.65 16 18 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 19 C 0.04 1.06 5.29 -17.43 -0.09 0.97 16 20 N -0.90 -27.08 13.97 55.49 0.78 -26.31 16 21 Si 0.88 22.16 24.96 -169.99 -4.24 17.92 16 22 H -0.29 -6.98 6.68 56.52 0.38 -6.60 16 23 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 25 C 0.08 1.54 6.48 -2.26 -0.01 1.53 16 26 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.11 1.22 6.64 -51.93 -0.34 0.88 16 31 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.18 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.07 1.09 7.63 -51.93 -0.40 0.70 16 34 H 0.07 1.02 7.75 -51.93 -0.40 0.62 16 35 H 0.07 1.19 7.19 -51.93 -0.37 0.81 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.40 7.94 -51.93 -0.41 -0.01 16 38 H 0.05 1.13 3.31 -51.93 -0.17 0.96 16 39 H 0.03 0.61 5.94 -51.93 -0.31 0.30 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.08 1.55 8.04 -51.93 -0.42 1.13 16 42 H 0.07 1.34 5.94 -51.93 -0.31 1.03 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -32.49 334.09 -7.35 -39.83 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.07 Total: -0.27 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -1.50 Total: 9.83 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.64 Total: -62.30 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.24 Total: 17.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.49 -7.35 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971426722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.813 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds