Wall clock time and date at job start Tue Mar 31 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47065 * 2 1 4 4 C 1.35401 * 126.44285 * 265.00220 * 3 2 1 5 5 C 1.35559 * 107.16178 * 179.97438 * 4 3 2 6 6 N 1.33096 * 108.34984 * 359.77755 * 5 4 3 7 7 C 1.31609 * 109.09644 * 0.36904 * 6 5 4 8 8 C 1.47408 * 125.86858 * 179.89770 * 7 6 5 9 9 O 1.21602 * 120.00589 * 179.69613 * 8 7 6 10 10 N 1.34778 * 119.99649 * 359.68741 * 8 7 6 11 11 C 1.47022 * 125.65027 * 359.97438 * 10 8 7 12 12 C 1.54321 * 107.27483 * 178.97223 * 11 10 8 13 13 C 1.55154 * 103.10325 * 337.72147 * 12 11 10 14 14 H 1.08994 * 111.00657 * 277.51335 * 13 12 11 15 15 N 1.46505 * 111.00518 * 153.66145 * 13 12 11 16 16 C 1.46501 * 119.99777 * 300.00167 * 15 13 12 17 17 C 1.36927 * 120.00183 * 120.00251 * 15 13 12 18 18 H 1.08000 * 119.99769 * 323.53062 * 17 15 13 19 19 C 1.38815 * 120.00450 * 143.52611 * 17 15 13 20 20 N 1.31616 * 120.00167 * 157.90958 * 19 17 15 21 21 Si 1.86800 * 119.99841 * 337.91717 * 19 17 15 22 22 H 1.48498 * 109.47088 * 95.66704 * 21 19 17 23 23 H 1.48501 * 109.47062 * 215.67065 * 21 19 17 24 24 H 1.48501 * 109.47304 * 335.66945 * 21 19 17 25 25 C 1.47424 * 125.65229 * 180.02562 * 10 8 7 26 26 H 1.09000 * 109.47077 * 300.00105 * 1 2 3 27 27 H 1.09002 * 109.46691 * 59.99774 * 1 2 3 28 28 H 1.08997 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47266 * 240.00617 * 2 1 3 30 30 H 1.08992 * 109.47154 * 120.00007 * 2 1 3 31 31 H 1.08002 * 126.41350 * 359.97438 * 4 3 2 32 32 H 1.07996 * 125.82410 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.88208 * 59.55858 * 11 10 8 34 34 H 1.09001 * 110.01607 * 298.46934 * 11 10 8 35 35 H 1.09004 * 110.71937 * 96.17394 * 12 11 10 36 36 H 1.09000 * 110.72704 * 219.26672 * 12 11 10 37 37 H 1.09001 * 109.47338 * 85.95310 * 16 15 13 38 38 H 1.09004 * 109.47287 * 205.95924 * 16 15 13 39 39 H 1.09004 * 109.47409 * 325.95274 * 16 15 13 40 40 H 0.97000 * 120.00244 * 180.02562 * 20 19 17 41 41 H 1.09004 * 110.36601 * 322.93363 * 25 10 8 42 42 H 1.09001 * 110.36995 * 85.25244 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3759 2.1079 -1.0851 5 6 2.7651 3.3275 -0.6392 6 7 2.6437 3.3475 0.6860 7 6 2.1981 2.1787 1.0953 8 6 1.9323 1.7972 2.4941 9 8 1.5148 0.6847 2.7522 10 7 2.1524 2.6815 3.4871 11 6 2.6541 4.0531 3.3176 12 6 2.7210 4.6932 4.7202 13 6 1.7181 3.8424 5.5433 14 1 0.6955 4.1869 5.3898 15 7 2.0653 3.8526 6.9666 16 6 3.3672 3.3448 7.4066 17 6 1.1730 4.3365 7.8856 18 1 0.5498 5.1834 7.6390 19 6 1.0694 3.7387 9.1341 20 7 0.5715 4.4143 10.1480 21 14 1.6368 1.9753 9.3753 22 1 3.0273 1.9697 9.8963 23 1 0.7417 1.2957 10.3459 24 1 1.5924 1.2588 8.0753 25 6 1.9309 2.4335 4.9234 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.3549 1.7777 -2.1132 32 1 3.1113 4.1446 -1.2547 33 1 1.9735 4.6210 2.6831 34 1 3.6481 4.0342 2.8708 35 1 3.7263 4.6116 5.1337 36 1 2.4039 5.7354 4.6841 37 1 4.1084 4.1414 7.3425 38 1 3.2929 2.9996 8.4379 39 1 3.6689 2.5154 6.7668 40 1 0.4994 3.9966 11.0205 41 1 1.0437 1.8173 5.0695 42 1 2.8043 1.9531 5.3645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971426722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:24 Heat of formation + Delta-G solvation = 49.227788 kcal Electronic energy + Delta-G solvation = -23944.820117 eV Core-core repulsion = 20540.665674 eV Total energy + Delta-G solvation = -3404.154443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.28880 -40.87796 -38.96638 -36.81444 -35.89046 -33.84436 -32.03677 -31.30957 -30.63454 -29.38616 -28.11905 -26.10831 -24.89586 -24.05024 -22.93914 -22.28209 -20.99778 -20.24213 -19.01678 -18.41093 -17.86099 -17.63988 -17.04567 -16.44689 -16.30618 -15.65731 -15.42396 -15.25556 -14.77405 -14.72230 -14.58271 -14.54528 -14.31603 -14.06770 -13.82480 -13.60017 -13.41519 -13.32979 -13.02534 -12.53849 -12.45187 -12.31404 -12.20502 -12.05855 -11.63595 -11.50134 -11.38247 -11.04142 -10.83711 -10.66544 -9.86713 -9.45111 -8.81298 -8.22923 -5.61891 0.31554 1.28473 1.33298 1.41543 1.51623 1.64174 2.11319 2.34691 2.39189 3.01579 3.15070 3.27187 3.70593 3.77943 3.82151 3.93912 4.02792 4.16466 4.26658 4.31974 4.40821 4.41201 4.48829 4.54139 4.61943 4.70367 4.78436 4.79991 4.94974 4.95991 5.00643 5.09517 5.12396 5.25303 5.27938 5.36815 5.69960 5.89640 5.93230 6.15095 6.33661 6.71007 6.91574 7.02660 7.56650 7.98441 8.96437 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.003965 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.165926 B = 7060.022739 C = 7680.845364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.093 3.907 3 N -0.414 5.414 4 C -0.005 4.005 5 C -0.048 4.048 6 N -0.456 5.456 7 C 0.105 3.895 8 C 0.608 3.392 9 O -0.575 6.575 10 N -0.593 5.593 11 C 0.130 3.870 12 C -0.139 4.139 13 C 0.167 3.833 14 H 0.074 0.926 15 N -0.606 5.606 16 C 0.104 3.896 17 C -0.263 4.263 18 H 0.050 0.950 19 C -0.015 4.015 20 N -0.945 5.945 21 Si 0.942 3.058 22 H -0.271 1.271 23 H -0.309 1.309 24 H -0.264 1.264 25 C 0.094 3.906 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.229 0.771 32 H 0.205 0.795 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.037 0.963 38 H 0.031 0.969 39 H 0.055 0.945 40 H 0.265 0.735 41 H 0.056 0.944 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.949 -6.664 -26.920 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.095 5.095 4 C -0.144 4.144 5 C -0.201 4.201 6 N -0.178 5.178 7 C -0.151 4.151 8 C 0.396 3.604 9 O -0.455 6.455 10 N -0.325 5.325 11 C 0.008 3.992 12 C -0.179 4.179 13 C 0.059 3.941 14 H 0.093 0.907 15 N -0.329 5.329 16 C -0.040 4.040 17 C -0.392 4.392 18 H 0.068 0.932 19 C -0.212 4.212 20 N -0.588 5.588 21 Si 0.771 3.229 22 H -0.198 1.198 23 H -0.238 1.238 24 H -0.188 1.188 25 C -0.030 4.030 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.152 0.848 30 H 0.103 0.897 31 H 0.245 0.755 32 H 0.222 0.778 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.784 -6.830 -26.046 27.541 hybrid contribution -0.313 -1.319 0.419 1.419 sum 5.471 -8.150 -25.627 27.443 Atomic orbital electron populations 1.22018 0.93438 1.04186 1.01812 1.22276 0.96424 0.78002 1.06097 1.45517 1.44541 1.13475 1.05963 1.23711 1.03507 0.93094 0.94100 1.23099 1.07601 0.99125 0.90317 1.70278 1.14985 1.18319 1.14239 1.22082 1.13655 0.89755 0.89658 1.16447 0.77919 0.83477 0.82574 1.90755 1.49095 1.21542 1.84104 1.48086 1.63229 1.15111 1.06075 1.22051 1.00364 0.79902 0.96932 1.23099 1.00877 1.00378 0.93527 1.21732 0.97967 0.91628 0.82810 0.90728 1.44017 1.13399 1.73491 1.01958 1.21436 0.86998 0.97687 0.97835 1.18715 1.17512 1.09076 0.93931 0.93232 1.26032 0.98424 1.00838 0.95934 1.69968 1.50331 1.37652 1.00880 0.85899 0.76902 0.82569 0.77530 1.19773 1.23759 1.18801 1.22868 1.00870 1.00303 0.78990 0.95050 0.90802 0.88634 0.84811 0.89699 0.75471 0.77806 0.90323 0.90014 0.90261 0.89245 0.94458 0.95103 0.92615 0.92639 0.92500 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.23 71.98 0.74 -1.81 16 2 C 0.09 1.50 6.18 86.38 0.53 2.04 16 3 N -0.41 -8.46 2.76 -516.44 -1.42 -9.88 16 4 C -0.01 -0.07 11.53 83.52 0.96 0.89 16 5 C -0.05 -0.84 11.85 83.88 0.99 0.16 16 6 N -0.46 -11.71 8.67 -189.54 -1.64 -13.35 16 7 C 0.11 2.95 7.65 136.28 1.04 3.99 16 8 C 0.61 20.68 7.84 86.66 0.68 21.36 16 9 O -0.57 -21.80 14.76 -4.04 -0.06 -21.86 16 10 N -0.59 -19.94 3.33 -814.70 -2.71 -22.66 16 11 C 0.13 3.72 5.53 86.73 0.48 4.20 16 12 C -0.14 -4.29 6.53 31.78 0.21 -4.09 16 13 C 0.17 6.50 3.57 46.55 0.17 6.67 16 14 H 0.07 3.08 7.96 -2.39 -0.02 3.07 16 15 N -0.61 -28.10 2.55 -694.06 -1.77 -29.86 16 16 C 0.10 4.32 8.43 127.77 1.08 5.40 16 17 C -0.26 -14.77 9.88 84.04 0.83 -13.94 16 18 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 19 C -0.02 -0.88 5.29 84.86 0.45 -0.43 16 20 N -0.94 -58.76 13.97 21.65 0.30 -58.46 16 21 Si 0.94 46.51 24.96 68.60 1.71 48.22 16 22 H -0.27 -12.60 6.68 99.48 0.66 -11.93 16 23 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 24 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 25 C 0.09 3.53 6.48 87.03 0.56 4.10 16 26 H 0.03 0.75 7.85 -2.39 -0.02 0.73 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.13 1.00 8.13 -2.38 -0.02 0.98 16 30 H 0.08 1.84 6.64 -2.39 -0.02 1.83 16 31 H 0.23 0.75 8.06 -2.91 -0.02 0.72 16 32 H 0.21 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.08 2.21 7.63 -2.38 -0.02 2.19 16 34 H 0.08 2.20 7.75 -2.39 -0.02 2.18 16 35 H 0.08 2.39 7.19 -2.39 -0.02 2.37 16 36 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.04 1.42 7.94 -2.39 -0.02 1.40 16 38 H 0.03 1.39 3.31 -2.39 -0.01 1.39 16 39 H 0.06 2.03 5.94 -2.38 -0.01 2.02 16 40 H 0.26 15.59 8.31 -92.71 -0.77 14.81 16 41 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 42 H 0.07 2.59 5.94 -2.39 -0.01 2.58 16 Total: -1.00 -73.69 334.09 4.11 -69.58 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.98 Total: 9.73 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 8.72 Total: 28.53 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -7.24 Total: -134.20 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.06 Total: -21.86 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.71 Total: 48.22 kcal Total: -73.69 4.11 -69.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971426722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.807 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds