Wall clock time and date at job start Tue Mar 31 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35366 * 127.25128 * 2 1 4 4 N 1.35032 * 107.22919 * 180.02562 * 3 2 1 5 5 C 1.46505 * 124.88165 * 179.97438 * 4 3 2 6 6 N 1.28464 * 110.23094 * 0.26329 * 4 3 2 7 7 C 1.31814 * 110.07552 * 359.56081 * 6 4 3 8 8 C 1.47704 * 126.51874 * 180.17214 * 7 6 4 9 9 O 1.21574 * 119.99803 * 180.29845 * 8 7 6 10 10 N 1.34780 * 120.00305 * 0.30326 * 8 7 6 11 11 C 1.47016 * 125.64597 * 0.02562 * 10 8 7 12 12 C 1.54328 * 107.27081 * 181.02221 * 11 10 8 13 13 C 1.55155 * 102.93842 * 22.19688 * 12 11 10 14 14 H 1.08994 * 111.00822 * 82.61040 * 13 12 11 15 15 N 1.46504 * 111.00253 * 206.41976 * 13 12 11 16 16 C 1.46507 * 119.99729 * 59.99986 * 15 13 12 17 17 C 1.36933 * 120.00449 * 240.00142 * 15 13 12 18 18 H 1.08001 * 119.99807 * 23.24265 * 17 15 13 19 19 C 1.38812 * 120.00265 * 203.24846 * 17 15 13 20 20 N 1.31616 * 119.99893 * 13.75558 * 19 17 15 21 21 Si 1.86796 * 120.00220 * 193.75742 * 19 17 15 22 22 H 1.48503 * 109.47207 * 89.99489 * 21 19 17 23 23 H 1.48494 * 109.47096 * 209.99911 * 21 19 17 24 24 H 1.48503 * 109.47113 * 330.00129 * 21 19 17 25 25 C 1.47419 * 125.64726 * 179.71608 * 10 8 7 26 26 H 1.09004 * 109.47009 * 89.97614 * 1 2 3 27 27 H 1.08998 * 109.47624 * 209.97826 * 1 2 3 28 28 H 1.08999 * 109.47412 * 329.98101 * 1 2 3 29 29 H 1.07996 * 126.38330 * 0.02811 * 3 2 1 30 30 H 1.09000 * 109.46718 * 90.00199 * 5 4 3 31 31 H 1.08996 * 109.47010 * 329.99715 * 5 4 3 32 32 H 1.09004 * 109.46739 * 209.99853 * 5 4 3 33 33 H 1.09006 * 109.88461 * 300.44290 * 11 10 8 34 34 H 1.09001 * 109.88299 * 61.45614 * 11 10 8 35 35 H 1.09000 * 110.71720 * 140.55652 * 12 11 10 36 36 H 1.08997 * 110.72125 * 263.65263 * 12 11 10 37 37 H 1.08999 * 109.46800 * 95.15887 * 16 15 13 38 38 H 1.08996 * 109.47046 * 215.16026 * 16 15 13 39 39 H 1.09004 * 109.46918 * 335.16020 * 16 15 13 40 40 H 0.96999 * 120.00678 * 179.97438 * 20 19 17 41 41 H 1.09003 * 110.36835 * 274.74450 * 25 10 8 42 42 H 1.08995 * 110.37316 * 37.06442 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6152 -0.0006 5 6 4.7938 1.4575 -0.0013 6 7 3.5998 -0.6694 -0.0065 7 6 2.3634 -1.1265 -0.0006 8 6 1.9505 -2.5446 -0.0008 9 8 0.7697 -2.8339 -0.0004 10 7 2.8828 -3.5180 -0.0014 11 6 4.3382 -3.3104 -0.0013 12 6 4.9998 -4.7044 -0.0283 13 6 3.8825 -5.6080 -0.6134 14 1 3.8639 -5.5513 -1.7017 15 7 4.0395 -6.9939 -0.1652 16 6 4.0040 -7.3098 1.2649 17 6 4.2195 -7.9941 -1.0830 18 1 4.6148 -7.7644 -2.0615 19 6 3.8938 -9.3032 -0.7558 20 7 3.1696 -9.5534 0.3143 21 14 4.4833 -10.7098 -1.8344 22 1 5.8068 -11.1813 -1.3534 23 1 3.5065 -11.8264 -1.7694 24 1 4.6054 -10.2399 -3.2378 25 6 2.6119 -4.9671 0.0043 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8901 0.5135 28 1 -0.3634 0.8898 0.5141 29 1 2.0221 2.1137 0.0004 30 1 5.0915 1.6665 1.0262 31 1 4.5791 2.3944 -0.5152 32 1 5.6025 0.9381 -0.5155 33 1 4.6319 -2.7433 -0.8847 34 1 4.6360 -2.7737 0.8995 35 1 5.8748 -4.7033 -0.6784 36 1 5.2696 -5.0229 0.9786 37 1 2.9945 -7.6100 1.5457 38 1 4.6969 -8.1247 1.4743 39 1 4.2942 -6.4296 1.8387 40 1 2.9417 -10.4681 0.5428 41 1 2.4630 -5.3212 1.0244 42 1 1.7383 -5.1922 -0.6074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971528136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:07 Heat of formation + Delta-G solvation = 80.399922 kcal Electronic energy + Delta-G solvation = -23663.200795 eV Core-core repulsion = 20260.398077 eV Total energy + Delta-G solvation = -3402.802718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.71997 -39.38432 -37.25497 -34.74103 -33.99286 -32.21570 -31.35885 -29.65781 -28.58138 -27.72273 -26.47255 -25.99448 -23.84654 -22.40092 -21.57579 -20.75822 -19.22606 -18.98828 -17.13756 -16.98060 -16.46617 -16.40488 -15.66470 -15.00913 -14.59504 -14.11888 -13.77380 -13.62350 -13.39998 -13.17442 -13.12353 -12.76710 -12.58965 -12.55005 -12.33307 -12.22882 -12.08357 -11.81971 -11.37436 -10.86876 -10.81388 -10.65841 -10.45272 -10.39335 -10.20534 -9.85129 -9.78173 -9.64899 -9.29088 -8.81799 -8.55334 -8.15662 -6.75660 -5.72460 -3.20221 1.63545 2.05394 2.33099 3.33927 3.40318 3.46480 3.47829 3.63031 4.19434 4.49853 4.60649 4.71418 4.74710 5.00468 5.10367 5.17416 5.21003 5.37208 5.50053 5.50329 5.68277 5.73109 5.78795 5.90829 5.96417 6.03939 6.15363 6.18257 6.40722 6.45699 6.51238 6.63766 6.68248 6.75570 6.84012 6.96813 7.36822 7.74145 7.79240 7.81676 7.94020 8.38874 8.50891 9.22462 9.84999 10.34430 11.31802 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029981 B = 0.003454 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.703622 B = 8105.355915 C = 8621.190210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.147 4.147 3 C -0.028 4.028 4 N -0.290 5.290 5 C 0.089 3.911 6 N -0.255 5.255 7 C -0.007 4.007 8 C 0.610 3.390 9 O -0.538 6.538 10 N -0.601 5.601 11 C 0.117 3.883 12 C -0.155 4.155 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.585 5.585 16 C 0.159 3.841 17 C -0.261 4.261 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.907 3.093 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.089 3.911 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.179 0.821 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.002 0.998 40 H 0.253 0.747 41 H 0.069 0.931 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 23.807 0.579 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.157 4.157 3 C -0.171 4.171 4 N -0.078 5.078 5 C -0.051 4.051 6 N -0.091 5.091 7 C -0.167 4.167 8 C 0.396 3.604 9 O -0.414 6.414 10 N -0.334 5.334 11 C -0.007 4.007 12 C -0.195 4.195 13 C 0.063 3.937 14 H 0.096 0.904 15 N -0.305 5.305 16 C 0.014 3.986 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.737 3.263 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.035 4.035 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.196 0.804 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.265 23.221 0.651 23.458 hybrid contribution -0.339 -0.328 -0.432 0.640 sum 2.926 22.893 0.219 23.080 Atomic orbital electron populations 1.20167 0.88138 1.02957 1.02328 1.20394 0.97488 0.90470 1.07340 1.22559 0.83799 1.00345 1.10366 1.45322 1.06937 1.03972 1.51533 1.22130 0.84959 0.93724 1.04310 1.73685 1.23243 0.93240 1.18922 1.21906 0.89321 0.95046 1.10438 1.16514 0.84665 0.81985 0.77220 1.90758 1.16424 1.82432 1.51784 1.48338 1.06954 1.07121 1.70968 1.21983 0.79421 0.97840 1.01416 1.23255 0.99776 0.93782 1.02708 1.21509 0.89947 0.85066 0.97212 0.90373 1.43859 1.83091 1.00642 1.02898 1.20809 1.00395 0.94963 0.82393 1.19227 1.36542 0.86735 0.96500 0.91207 1.25057 0.98098 0.98211 0.98038 1.70072 1.38408 1.19003 1.27261 0.86222 0.77985 0.82091 0.80026 1.21476 1.21743 1.20429 1.23146 1.01351 0.76997 1.02018 0.91531 0.89801 0.92222 0.80418 0.89842 0.88836 0.88528 0.91644 0.91954 0.90774 0.90723 0.94848 0.93983 0.97922 0.93638 0.91230 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.93 36.00 0.36 -0.56 16 2 C -0.15 -1.94 6.25 -104.40 -0.65 -2.59 16 3 C -0.03 -0.28 11.40 -17.17 -0.20 -0.48 16 4 N -0.29 -2.96 3.70 -68.12 -0.25 -3.21 16 5 C 0.09 0.44 11.31 59.85 0.68 1.11 16 6 N -0.26 -3.53 9.50 33.42 0.32 -3.22 16 7 C -0.01 -0.11 6.98 -82.76 -0.58 -0.69 16 8 C 0.61 11.47 7.86 -12.39 -0.10 11.38 16 9 O -0.54 -11.38 15.37 5.30 0.08 -11.30 16 10 N -0.60 -11.07 3.32 -171.54 -0.57 -11.64 16 11 C 0.12 1.85 5.54 -3.07 -0.02 1.83 16 12 C -0.15 -2.65 6.49 -24.90 -0.16 -2.81 16 13 C 0.17 3.61 3.55 -65.66 -0.23 3.37 16 14 H 0.08 1.65 7.96 -51.93 -0.41 1.24 16 15 N -0.58 -14.57 2.96 -170.89 -0.51 -15.07 16 16 C 0.16 3.89 7.56 59.85 0.45 4.34 16 17 C -0.26 -7.12 9.60 -15.06 -0.14 -7.27 16 18 H 0.07 1.86 7.87 -52.49 -0.41 1.45 16 19 C 0.00 0.14 5.08 -17.43 -0.09 0.05 16 20 N -0.90 -26.37 10.77 55.49 0.60 -25.77 16 21 Si 0.91 21.84 29.58 -169.99 -5.03 16.81 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.09 1.83 6.46 -2.41 -0.02 1.81 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.19 6.72 -51.93 -0.35 0.84 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.20 8.13 -51.93 -0.42 -0.22 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.98 7.65 -51.93 -0.40 0.59 16 34 H 0.06 0.94 7.77 -51.93 -0.40 0.54 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.32 6.47 -51.93 -0.34 0.98 16 37 H 0.03 0.89 7.33 -51.93 -0.38 0.51 16 38 H 0.04 1.10 7.38 -51.93 -0.38 0.71 16 39 H 0.00 0.05 6.37 -51.93 -0.33 -0.28 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.07 1.50 6.96 -51.93 -0.36 1.14 16 42 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -33.70 340.24 -7.21 -40.91 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.28 Total: -2.14 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -0.70 Total: 9.50 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.41 Total: -58.91 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.70 -7.21 -40.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971528136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.311 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds