Wall clock time and date at job start Tue Mar 31 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35366 * 127.25128 * 2 1 4 4 N 1.35032 * 107.22919 * 180.02562 * 3 2 1 5 5 C 1.46505 * 124.88165 * 179.97438 * 4 3 2 6 6 N 1.28464 * 110.23094 * 0.26329 * 4 3 2 7 7 C 1.31814 * 110.07552 * 359.56081 * 6 4 3 8 8 C 1.47704 * 126.51874 * 180.17214 * 7 6 4 9 9 O 1.21574 * 119.99803 * 180.29845 * 8 7 6 10 10 N 1.34780 * 120.00305 * 0.30326 * 8 7 6 11 11 C 1.47016 * 125.64597 * 0.02562 * 10 8 7 12 12 C 1.54328 * 107.27081 * 181.02221 * 11 10 8 13 13 C 1.55155 * 102.93842 * 22.19688 * 12 11 10 14 14 H 1.08994 * 111.00822 * 82.61040 * 13 12 11 15 15 N 1.46504 * 111.00253 * 206.41976 * 13 12 11 16 16 C 1.46507 * 119.99729 * 59.99986 * 15 13 12 17 17 C 1.36933 * 120.00449 * 240.00142 * 15 13 12 18 18 H 1.08001 * 119.99807 * 23.24265 * 17 15 13 19 19 C 1.38812 * 120.00265 * 203.24846 * 17 15 13 20 20 N 1.31616 * 119.99893 * 13.75558 * 19 17 15 21 21 Si 1.86796 * 120.00220 * 193.75742 * 19 17 15 22 22 H 1.48503 * 109.47207 * 89.99489 * 21 19 17 23 23 H 1.48494 * 109.47096 * 209.99911 * 21 19 17 24 24 H 1.48503 * 109.47113 * 330.00129 * 21 19 17 25 25 C 1.47419 * 125.64726 * 179.71608 * 10 8 7 26 26 H 1.09004 * 109.47009 * 89.97614 * 1 2 3 27 27 H 1.08998 * 109.47624 * 209.97826 * 1 2 3 28 28 H 1.08999 * 109.47412 * 329.98101 * 1 2 3 29 29 H 1.07996 * 126.38330 * 0.02811 * 3 2 1 30 30 H 1.09000 * 109.46718 * 90.00199 * 5 4 3 31 31 H 1.08996 * 109.47010 * 329.99715 * 5 4 3 32 32 H 1.09004 * 109.46739 * 209.99853 * 5 4 3 33 33 H 1.09006 * 109.88461 * 300.44290 * 11 10 8 34 34 H 1.09001 * 109.88299 * 61.45614 * 11 10 8 35 35 H 1.09000 * 110.71720 * 140.55652 * 12 11 10 36 36 H 1.08997 * 110.72125 * 263.65263 * 12 11 10 37 37 H 1.08999 * 109.46800 * 95.15887 * 16 15 13 38 38 H 1.08996 * 109.47046 * 215.16026 * 16 15 13 39 39 H 1.09004 * 109.46918 * 335.16020 * 16 15 13 40 40 H 0.96999 * 120.00678 * 179.97438 * 20 19 17 41 41 H 1.09003 * 110.36835 * 274.74450 * 25 10 8 42 42 H 1.08995 * 110.37316 * 37.06442 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6152 -0.0006 5 6 4.7938 1.4575 -0.0013 6 7 3.5998 -0.6694 -0.0065 7 6 2.3634 -1.1265 -0.0006 8 6 1.9505 -2.5446 -0.0008 9 8 0.7697 -2.8339 -0.0004 10 7 2.8828 -3.5180 -0.0014 11 6 4.3382 -3.3104 -0.0013 12 6 4.9998 -4.7044 -0.0283 13 6 3.8825 -5.6080 -0.6134 14 1 3.8639 -5.5513 -1.7017 15 7 4.0395 -6.9939 -0.1652 16 6 4.0040 -7.3098 1.2649 17 6 4.2195 -7.9941 -1.0830 18 1 4.6148 -7.7644 -2.0615 19 6 3.8938 -9.3032 -0.7558 20 7 3.1696 -9.5534 0.3143 21 14 4.4833 -10.7098 -1.8344 22 1 5.8068 -11.1813 -1.3534 23 1 3.5065 -11.8264 -1.7694 24 1 4.6054 -10.2399 -3.2378 25 6 2.6119 -4.9671 0.0043 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8901 0.5135 28 1 -0.3634 0.8898 0.5141 29 1 2.0221 2.1137 0.0004 30 1 5.0915 1.6665 1.0262 31 1 4.5791 2.3944 -0.5152 32 1 5.6025 0.9381 -0.5155 33 1 4.6319 -2.7433 -0.8847 34 1 4.6360 -2.7737 0.8995 35 1 5.8748 -4.7033 -0.6784 36 1 5.2696 -5.0229 0.9786 37 1 2.9945 -7.6100 1.5457 38 1 4.6969 -8.1247 1.4743 39 1 4.2942 -6.4296 1.8387 40 1 2.9417 -10.4681 0.5428 41 1 2.4630 -5.3212 1.0244 42 1 1.7383 -5.1922 -0.6074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971528136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:06 Heat of formation + Delta-G solvation = 58.161108 kcal Electronic energy + Delta-G solvation = -23664.165142 eV Core-core repulsion = 20260.398077 eV Total energy + Delta-G solvation = -3403.767066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.61561 -40.87389 -38.85985 -36.57779 -34.81096 -33.64018 -32.76309 -31.26972 -29.76466 -28.83271 -28.07906 -27.50629 -25.35131 -24.02923 -22.71549 -21.67121 -20.93743 -20.22783 -18.94806 -18.24582 -17.62564 -17.44664 -17.13942 -16.49267 -16.22927 -15.63327 -15.12565 -14.88218 -14.51776 -14.40353 -14.28282 -14.19627 -14.02152 -13.76011 -13.44403 -13.32260 -13.21988 -13.15186 -12.95671 -12.77750 -12.47795 -12.39891 -12.21692 -12.06783 -11.85635 -11.68200 -11.44528 -11.10141 -10.64343 -10.19851 -9.82090 -9.55737 -8.80301 -7.83631 -5.34493 0.53093 1.17733 1.48454 1.49040 1.58261 1.60062 2.01350 2.31891 2.51912 3.25810 3.31901 3.53855 3.76108 3.92349 3.93277 4.12487 4.19619 4.33603 4.38575 4.43766 4.46854 4.51503 4.61833 4.69336 4.75437 4.78829 4.88970 4.89714 4.99374 5.01237 5.17166 5.20103 5.24942 5.30368 5.41189 5.52358 5.64472 5.69313 5.96142 6.30880 6.47627 6.84517 7.11355 7.13608 7.82355 8.27738 9.19167 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029981 B = 0.003454 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.703622 B = 8105.355915 C = 8621.190210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.176 4.176 3 C -0.002 4.002 4 N -0.278 5.278 5 C 0.076 3.924 6 N -0.267 5.267 7 C -0.047 4.047 8 C 0.603 3.397 9 O -0.576 6.576 10 N -0.605 5.605 11 C 0.129 3.871 12 C -0.138 4.138 13 C 0.168 3.832 14 H 0.074 0.926 15 N -0.599 5.599 16 C 0.177 3.823 17 C -0.269 4.269 18 H 0.076 0.924 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.973 3.027 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.267 1.267 25 C 0.100 3.900 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.228 0.772 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.002 0.998 38 H 0.019 0.981 39 H 0.033 0.967 40 H 0.249 0.751 41 H 0.054 0.946 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.803 27.345 -0.076 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.186 4.186 3 C -0.145 4.145 4 N -0.066 5.066 5 C -0.062 4.062 6 N -0.105 5.105 7 C -0.204 4.204 8 C 0.391 3.609 9 O -0.455 6.455 10 N -0.337 5.337 11 C 0.006 3.994 12 C -0.178 4.178 13 C 0.059 3.941 14 H 0.092 0.908 15 N -0.320 5.320 16 C 0.032 3.968 17 C -0.399 4.399 18 H 0.093 0.907 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.801 3.199 22 H -0.210 1.210 23 H -0.224 1.224 24 H -0.192 1.192 25 C -0.025 4.025 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.245 0.755 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.020 0.980 38 H 0.038 0.962 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.346 26.808 -0.019 27.336 hybrid contribution -0.945 -1.228 -0.232 1.567 sum 4.401 25.579 -0.250 25.956 Atomic orbital electron populations 1.20111 0.87940 1.02836 1.02260 1.20699 0.98192 0.90814 1.08881 1.23184 0.82767 1.01485 1.07042 1.45902 1.08808 1.03209 1.48698 1.22646 0.83181 0.94219 1.06124 1.73574 1.22171 0.95314 1.19416 1.21544 0.91116 0.93672 1.14076 1.17078 0.84166 0.83454 0.76156 1.90721 1.17988 1.83391 1.53382 1.48384 1.08232 1.05910 1.71222 1.22003 0.77501 0.97118 1.02736 1.23109 0.98971 0.93129 1.02614 1.21624 0.91462 0.83797 0.97182 0.90773 1.44036 1.83431 1.01888 1.02684 1.20504 0.97959 0.95357 0.82940 1.19601 1.35753 0.87572 0.97006 0.90660 1.25861 0.98584 1.00639 0.99534 1.70248 1.39970 1.19001 1.29091 0.85180 0.77158 0.78695 0.78866 1.20980 1.22421 1.19181 1.22761 1.00312 0.79051 1.00406 0.91604 0.93232 0.88939 0.75509 0.88078 0.85171 0.88255 0.90225 0.90596 0.88682 0.90900 0.98010 0.96190 0.94892 0.94195 0.92819 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 9.93 71.24 0.71 -0.98 16 2 C -0.18 -4.35 6.25 -19.72 -0.12 -4.47 16 3 C 0.00 -0.03 11.40 83.54 0.95 0.93 16 4 N -0.28 -4.58 3.70 -369.45 -1.37 -5.95 16 5 C 0.08 0.37 11.31 127.77 1.44 1.81 16 6 N -0.27 -6.78 9.50 -48.18 -0.46 -7.23 16 7 C -0.05 -1.45 6.98 42.45 0.30 -1.16 16 8 C 0.60 23.41 7.86 86.74 0.68 24.09 16 9 O -0.58 -25.90 15.37 -3.95 -0.06 -25.96 16 10 N -0.60 -22.67 3.32 -814.90 -2.71 -25.38 16 11 C 0.13 3.89 5.54 86.73 0.48 4.37 16 12 C -0.14 -4.53 6.49 31.78 0.21 -4.33 16 13 C 0.17 7.08 3.55 46.46 0.16 7.24 16 14 H 0.07 3.16 7.96 -2.39 -0.02 3.14 16 15 N -0.60 -30.42 2.96 -694.57 -2.05 -32.47 16 16 C 0.18 8.93 7.56 127.77 0.97 9.90 16 17 C -0.27 -14.90 9.60 84.03 0.81 -14.09 16 18 H 0.08 4.00 7.87 -2.91 -0.02 3.97 16 19 C -0.05 -2.87 5.08 84.86 0.43 -2.44 16 20 N -0.94 -56.51 10.77 21.65 0.23 -56.28 16 21 Si 0.97 45.46 29.58 68.60 2.03 47.49 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C 0.10 4.28 6.46 86.94 0.56 4.84 16 26 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.05 1.47 6.72 -2.39 -0.02 1.45 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.23 1.08 8.06 -2.91 -0.02 1.05 16 30 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.13 -0.26 8.13 -2.39 -0.02 -0.28 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 2.22 7.65 -2.38 -0.02 2.20 16 34 H 0.08 2.13 7.77 -2.39 -0.02 2.11 16 35 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.07 2.44 6.47 -2.39 -0.02 2.42 16 37 H 0.00 0.09 7.33 -2.39 -0.02 0.07 16 38 H 0.02 1.06 7.38 -2.39 -0.02 1.04 16 39 H 0.03 1.42 6.37 -2.38 -0.02 1.41 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.05 2.45 6.96 -2.39 -0.02 2.43 16 42 H 0.05 2.27 8.03 -2.39 -0.02 2.25 16 Total: -1.00 -77.66 340.24 4.21 -73.46 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.01 Total: 6.61 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 7.58 Total: 25.72 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -6.35 Total: -127.31 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.06 Total: -25.96 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -77.66 4.21 -73.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971528136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.616 kcal (2) G-P(sol) polarization free energy of solvation -77.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds