Wall clock time and date at job start Tue Mar 31 2020 03:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34952 * 126.03469 * 2 1 4 4 C 1.35316 * 107.74193 * 179.75317 * 3 2 1 5 5 C 1.39871 * 107.92375 * 0.39094 * 4 3 2 6 6 C 1.50697 * 125.90026 * 179.86550 * 5 4 3 7 7 C 1.50698 * 109.46908 * 124.71702 * 6 5 4 8 8 O 1.21281 * 120.00543 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00060 * 179.97438 * 7 6 5 10 10 C 1.48216 * 119.97014 * 179.97438 * 9 7 6 11 11 C 1.47141 * 110.33874 * 102.51810 * 10 9 7 12 12 C 1.53791 * 111.84275 * 58.29354 * 11 10 9 13 13 N 1.43463 * 107.96008 * 281.66442 * 12 11 10 14 14 C 1.36939 * 118.93940 * 273.60921 * 13 12 11 15 15 H 1.07996 * 119.99888 * 27.15052 * 14 13 12 16 16 C 1.38811 * 119.99923 * 207.14277 * 14 13 12 17 17 N 1.31618 * 119.99828 * 26.50753 * 16 14 13 18 18 Si 1.86794 * 120.00121 * 206.50449 * 16 14 13 19 19 H 1.48502 * 109.47371 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.47290 * 60.00322 * 18 16 14 21 21 H 1.48493 * 109.47308 * 300.00281 * 18 16 14 22 22 C 1.48860 * 122.11873 * 93.89373 * 13 12 11 23 23 C 1.43629 * 119.96601 * 0.02562 * 9 7 6 24 24 N 1.30845 * 108.19926 * 359.60167 * 5 4 3 25 25 H 1.09006 * 109.47146 * 269.98091 * 1 2 3 26 26 H 1.09002 * 109.47445 * 29.97050 * 1 2 3 27 27 H 1.08997 * 109.47044 * 149.98056 * 1 2 3 28 28 H 1.07994 * 126.13027 * 359.97438 * 3 2 1 29 29 H 1.08000 * 126.03894 * 180.27544 * 4 3 2 30 30 H 1.09000 * 109.46996 * 4.71804 * 6 5 4 31 31 H 1.08998 * 109.47187 * 244.71465 * 6 5 4 32 32 H 1.08998 * 109.32711 * 342.24591 * 10 9 7 33 33 H 1.09004 * 109.32269 * 222.77652 * 10 9 7 34 34 H 1.09004 * 109.00324 * 297.68651 * 11 10 9 35 35 H 1.08995 * 108.94047 * 178.86463 * 11 10 9 36 36 H 1.09008 * 109.76191 * 162.05047 * 12 11 10 37 37 H 1.09000 * 109.80804 * 41.31082 * 12 11 10 38 38 H 0.97004 * 120.00393 * 5.78352 * 17 16 14 39 39 H 1.09002 * 109.48060 * 80.34523 * 22 13 12 40 40 H 1.08993 * 109.47722 * 200.37784 * 22 13 12 41 41 H 1.09000 * 108.87201 * 31.42068 * 23 9 7 42 42 H 1.08996 * 108.87306 * 149.96369 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5436 0.6666 0.0056 5 6 3.5347 -0.7321 0.0000 6 6 4.7497 -1.6236 0.0004 7 6 4.6721 -2.5777 1.1643 8 8 3.7239 -2.5375 1.9194 9 7 5.6566 -3.4758 1.3662 10 6 5.5799 -4.4136 2.5114 11 6 5.1613 -5.7476 2.0529 12 6 6.1234 -6.3179 0.9973 13 7 5.8243 -5.6916 -0.2582 14 6 4.8467 -6.2305 -1.0513 15 1 4.0397 -6.7935 -0.6062 16 6 4.8929 -6.0531 -2.4272 17 7 6.0480 -5.8572 -3.0270 18 14 3.3159 -6.0925 -3.4275 19 1 3.6343 -5.8798 -4.8624 20 1 2.4047 -5.0180 -2.9578 21 1 2.6548 -7.4113 -3.2579 22 6 6.5467 -4.4783 -0.7294 23 6 6.7795 -3.5226 0.4719 24 7 2.2891 -1.1328 0.0000 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.9281 2.1193 -0.0004 29 1 4.4210 1.2963 0.0112 30 1 5.6482 -1.0131 0.0903 31 1 4.7860 -2.1887 -0.9309 32 1 4.8582 -4.0386 3.2370 33 1 6.5592 -4.4857 2.9847 34 1 4.1625 -5.6776 1.6219 35 1 5.1320 -6.4226 2.9082 36 1 5.9828 -7.3956 0.9144 37 1 7.1534 -6.1015 1.2811 38 1 6.8737 -5.9200 -2.5219 39 1 7.5059 -4.7696 -1.1574 40 1 5.9495 -3.9711 -1.4871 41 1 6.9704 -2.5186 0.0928 42 1 7.6556 -3.8633 1.0236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981143794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:49 Heat of formation + Delta-G solvation = 78.681266 kcal Electronic energy + Delta-G solvation = -24547.326399 eV Core-core repulsion = 21144.449154 eV Total energy + Delta-G solvation = -3402.877245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01145 -39.57412 -37.00282 -34.35021 -33.76228 -32.81392 -30.80015 -30.18524 -29.40506 -27.49706 -25.87142 -24.97833 -23.64194 -22.11537 -20.98597 -19.84901 -19.67616 -18.25055 -17.35940 -16.86839 -16.44677 -15.82878 -15.29066 -15.07503 -14.26445 -14.13636 -13.93068 -13.68327 -13.53901 -13.40355 -12.89924 -12.71578 -12.57699 -12.46346 -12.19381 -12.15638 -12.09551 -11.60231 -11.19050 -11.02404 -10.64650 -10.31599 -10.25210 -10.24364 -10.20724 -9.95622 -9.33754 -9.27853 -8.97095 -8.38325 -8.26868 -8.04022 -6.83610 -6.01682 -3.18519 2.09928 2.68310 2.94339 3.18638 3.53461 3.60281 3.65988 3.75803 4.57271 4.65042 4.83546 5.00656 5.09208 5.15325 5.16742 5.35060 5.40171 5.46996 5.56659 5.59507 5.74443 5.76538 5.85985 5.90512 5.95743 6.01253 6.05506 6.19012 6.23913 6.41058 6.51324 6.73275 6.80969 6.81861 6.98484 7.02794 7.17239 7.26093 7.97119 8.00645 8.11753 8.62167 8.75825 9.20316 9.89231 10.28442 11.24532 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.006217 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.477219 B = 4502.459166 C = 5633.023970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.381 5.381 3 C 0.044 3.956 4 C -0.267 4.267 5 C 0.089 3.911 6 C -0.061 4.061 7 C 0.526 3.474 8 O -0.539 6.539 9 N -0.588 5.588 10 C 0.132 3.868 11 C -0.168 4.168 12 C 0.165 3.835 13 N -0.593 5.593 14 C -0.348 4.348 15 H 0.052 0.948 16 C -0.018 4.018 17 N -0.916 5.916 18 Si 1.052 2.948 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.293 1.293 22 C 0.136 3.864 23 C 0.087 3.913 24 N -0.255 5.255 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.145 0.855 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.031 0.969 38 H 0.267 0.733 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 13.149 7.117 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.163 5.163 3 C -0.102 4.102 4 C -0.297 4.297 5 C -0.079 4.079 6 C -0.102 4.102 7 C 0.314 3.686 8 O -0.416 6.416 9 N -0.320 5.320 10 C 0.011 3.989 11 C -0.210 4.210 12 C 0.037 3.963 13 N -0.316 5.316 14 C -0.478 4.478 15 H 0.070 0.930 16 C -0.220 4.220 17 N -0.556 5.556 18 Si 0.882 3.118 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.221 1.221 22 C 0.010 3.990 23 C -0.039 4.039 24 N -0.076 5.076 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.187 0.813 29 H 0.163 0.837 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.258 12.369 5.991 14.388 hybrid contribution 1.047 0.438 1.473 1.859 sum -3.211 12.807 7.463 15.167 Atomic orbital electron populations 1.21786 0.74649 1.04196 1.03123 1.48584 1.06577 1.04017 1.57168 1.22410 0.91197 0.93293 1.03280 1.21314 0.96993 0.94054 1.17326 1.21618 0.92882 0.93213 1.00183 1.20104 0.94235 0.96028 0.99883 1.20167 0.81845 0.81022 0.85616 1.90658 1.31881 1.71829 1.47277 1.47318 1.22186 1.34299 1.28228 1.20505 1.00842 0.89777 0.87824 1.21837 1.03402 0.95831 0.99888 1.20271 0.94244 0.95680 0.86096 1.43665 1.43010 1.26364 1.18548 1.19897 1.02521 1.35298 0.90036 0.92984 1.25665 1.02881 0.99418 0.94057 1.70827 0.97696 1.49140 1.37947 0.83713 0.75495 0.76356 0.76220 1.21153 1.21914 1.22052 1.22203 0.96424 0.86928 0.93442 1.22033 0.88226 1.00420 0.93187 1.77591 1.01343 1.06511 1.22172 0.91016 0.89807 0.89310 0.81302 0.83691 0.87549 0.86700 0.90554 0.92285 0.91212 0.92783 0.93588 0.95102 0.92159 0.94690 0.91273 0.91233 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 11.47 59.85 0.69 1.74 16 2 N -0.38 -5.74 4.01 -68.16 -0.27 -6.02 16 3 C 0.04 0.55 11.49 -17.22 -0.20 0.35 16 4 C -0.27 -3.81 10.72 -40.01 -0.43 -4.24 16 5 C 0.09 1.59 6.02 -82.40 -0.50 1.10 16 6 C -0.06 -1.04 4.83 -29.04 -0.14 -1.18 16 7 C 0.53 10.49 7.66 -10.99 -0.08 10.41 16 8 O -0.54 -12.52 15.00 5.56 0.08 -12.44 16 9 N -0.59 -10.82 2.46 -176.39 -0.43 -11.25 16 10 C 0.13 2.30 5.70 -5.91 -0.03 2.27 16 11 C -0.17 -3.21 5.64 -29.13 -0.16 -3.37 16 12 C 0.17 3.43 5.63 -5.24 -0.03 3.40 16 13 N -0.59 -14.36 2.38 -171.75 -0.41 -14.77 16 14 C -0.35 -9.73 9.12 -15.06 -0.14 -9.87 16 15 H 0.05 1.52 7.96 -52.49 -0.42 1.10 16 16 C -0.02 -0.51 4.60 -17.43 -0.08 -0.59 16 17 N -0.92 -26.82 12.63 55.49 0.70 -26.12 16 18 Si 1.05 26.14 29.99 -169.99 -5.10 21.04 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.14 2.95 5.09 -1.54 -0.01 2.94 16 23 C 0.09 1.46 5.07 -4.36 -0.02 1.44 16 24 N -0.25 -5.06 11.92 33.67 0.40 -4.65 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.11 1.39 7.35 -51.93 -0.38 1.01 16 31 H 0.12 2.12 7.35 -51.93 -0.38 1.73 16 32 H 0.08 1.38 7.12 -51.93 -0.37 1.01 16 33 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.07 1.61 7.91 -51.93 -0.41 1.20 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.99 8.02 -51.92 -0.42 0.58 16 37 H 0.03 0.58 7.59 -51.93 -0.39 0.18 16 38 H 0.27 7.78 6.37 -40.82 -0.26 7.52 16 39 H 0.04 0.78 7.11 -51.93 -0.37 0.41 16 40 H 0.07 1.67 6.23 -51.93 -0.32 1.35 16 41 H 0.07 0.97 6.38 -51.93 -0.33 0.64 16 42 H 0.06 0.96 7.73 -51.93 -0.40 0.56 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -36.50 336.58 -7.30 -43.80 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.21 Total: 0.95 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.14 Total: 4.39 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.01 Total: -62.81 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.44 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.10 Total: 21.04 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.50 -7.30 -43.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981143794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.477 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds