Wall clock time and date at job start Tue Mar 31 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30857 * 125.41860 * 2 1 4 4 C 1.33319 * 109.68211 * 179.79088 * 3 2 1 5 5 C 1.36655 * 107.78642 * 0.38284 * 4 3 2 6 6 C 1.46767 * 126.84548 * 179.89999 * 5 4 3 7 7 O 1.21679 * 120.00221 * 188.07971 * 6 5 4 8 8 N 1.34774 * 119.99911 * 8.06902 * 6 5 4 9 9 C 1.47430 * 125.64922 * 358.76380 * 8 6 5 10 10 C 1.54911 * 104.83158 * 155.88965 * 9 8 6 11 11 H 1.09000 * 111.00288 * 155.08738 * 10 9 8 12 12 N 1.46500 * 111.03489 * 278.91917 * 10 9 8 13 13 C 1.36942 * 120.00166 * 267.21711 * 12 10 9 14 14 H 1.08001 * 119.99803 * 359.97438 * 13 12 10 15 15 C 1.38812 * 119.99896 * 180.02562 * 13 12 10 16 16 N 1.31612 * 120.00371 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47153 * 59.99582 * 17 15 13 19 19 H 1.48499 * 109.47044 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47033 * 299.99566 * 17 15 13 21 21 C 1.55148 * 101.58179 * 37.00915 * 10 9 8 22 22 C 1.47026 * 125.64969 * 178.78130 * 8 6 5 23 23 H 1.08993 * 109.88407 * 300.46294 * 22 8 6 24 24 C 1.53007 * 109.87973 * 61.62704 * 22 8 6 25 25 N 1.34488 * 125.41439 * 180.02562 * 2 1 3 26 26 C 1.46497 * 126.47729 * 359.97438 * 25 2 1 27 27 H 1.09005 * 109.47024 * 269.97130 * 1 2 3 28 28 H 1.09002 * 109.47149 * 29.96630 * 1 2 3 29 29 H 1.08996 * 109.47425 * 149.97340 * 1 2 3 30 30 H 1.07998 * 126.10591 * 180.28119 * 4 3 2 31 31 H 1.09000 * 110.36548 * 37.05284 * 9 8 6 32 32 H 1.08999 * 110.45583 * 274.77747 * 9 8 6 33 33 H 0.97001 * 120.00340 * 87.21681 * 12 10 9 34 34 H 0.96996 * 120.00831 * 180.02562 * 16 15 13 35 35 H 1.09002 * 110.72133 * 206.13107 * 21 10 9 36 36 H 1.09002 * 110.72114 * 82.86526 * 21 10 9 37 37 H 1.08998 * 109.46991 * 177.80795 * 24 22 8 38 38 H 1.08994 * 109.46650 * 297.81049 * 24 22 8 39 39 H 1.08998 * 109.46975 * 57.80453 * 24 22 8 40 40 H 1.09001 * 109.47650 * 274.82824 * 26 25 2 41 41 H 1.09002 * 109.46821 * 34.83457 * 26 25 2 42 42 H 1.09003 * 109.47170 * 154.82664 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0046 5 6 3.5975 -0.6608 -0.0011 6 6 4.8028 -1.4983 -0.0010 7 8 4.7076 -2.7016 -0.1545 8 7 6.0151 -0.9346 0.1689 9 6 6.2764 0.5064 0.3388 10 6 7.6295 0.5782 1.0896 11 1 8.1342 1.5247 0.8956 12 7 7.4444 0.3703 2.5279 13 6 7.2695 1.4452 3.3583 14 1 7.2685 2.4462 2.9528 15 6 7.0947 1.2481 4.7212 16 7 7.0965 0.0283 5.2153 17 14 6.8554 2.7143 5.8537 18 1 5.6427 3.4656 5.4412 19 1 6.6913 2.2389 7.2509 20 1 8.0415 3.6038 5.7691 21 6 8.4031 -0.6056 0.4516 22 6 7.2961 -1.6546 0.2153 23 1 7.2872 -2.3749 1.0333 24 6 7.5366 -2.3747 -1.1132 25 7 2.2864 -1.0961 -0.0005 26 6 1.8311 -2.4885 -0.0006 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3634 -0.8897 -0.5142 30 1 4.3978 1.3721 0.0100 31 1 5.4877 0.9675 0.9333 32 1 6.3546 0.9964 -0.6317 33 1 7.4458 -0.5287 2.8922 34 1 6.9740 -0.1095 6.1676 35 1 9.1571 -0.9889 1.1390 36 1 8.8576 -0.3052 -0.4925 37 1 8.5051 -2.8739 -1.0857 38 1 6.7514 -3.1135 -1.2733 39 1 7.5245 -1.6495 -1.9269 40 1 1.6363 -2.8072 1.0234 41 1 0.9162 -2.5715 -0.5873 42 1 2.6020 -3.1228 -0.4381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989348329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:32 Heat of formation + Delta-G solvation = 51.813827 kcal Electronic energy + Delta-G solvation = -24294.665161 eV Core-core repulsion = 20890.622857 eV Total energy + Delta-G solvation = -3404.042304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.14190 -39.64429 -37.28668 -34.20691 -33.84099 -32.43281 -31.36529 -31.07322 -28.50039 -27.58561 -26.73444 -25.64666 -23.85358 -23.01544 -21.35725 -20.39818 -19.57076 -18.96191 -17.32008 -16.71627 -16.46607 -16.04723 -15.76342 -14.86975 -14.62848 -14.00506 -13.90479 -13.70213 -13.37354 -13.36218 -13.18364 -13.10015 -12.73498 -12.62124 -12.40442 -12.37441 -12.23311 -11.86861 -11.63174 -11.16878 -10.90347 -10.71650 -10.55733 -10.33656 -10.14973 -10.04115 -9.72403 -9.61261 -9.50963 -9.02647 -8.41248 -8.18167 -7.04927 -5.82373 -3.13020 1.50390 2.53398 2.97087 3.42091 3.43940 3.47206 3.47481 3.61809 4.39102 4.53859 4.64465 4.77035 4.92168 5.09994 5.14112 5.18466 5.30028 5.33798 5.39236 5.50583 5.53766 5.57391 5.58413 5.65520 5.73354 5.79490 5.85871 5.97571 6.15755 6.18383 6.26553 6.39722 6.40702 6.54575 6.66552 6.71010 6.79067 7.14591 7.64471 7.84334 8.04323 8.34651 8.43704 9.46716 10.01212 10.35456 11.39494 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.005899 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.787560 B = 4745.210159 C = 6217.301513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.218 3.782 3 N -0.495 5.495 4 C 0.031 3.969 5 C -0.077 4.077 6 C 0.610 3.390 7 O -0.562 6.562 8 N -0.583 5.583 9 C 0.051 3.949 10 C 0.169 3.831 11 H 0.077 0.923 12 N -0.710 5.710 13 C -0.249 4.249 14 H 0.073 0.927 15 C -0.007 4.007 16 N -0.929 5.929 17 Si 0.907 3.093 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.284 1.284 21 C -0.139 4.139 22 C 0.142 3.858 23 H 0.076 0.924 24 C -0.160 4.160 25 N -0.426 5.426 26 C 0.064 3.936 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.193 0.807 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 -3.152 -13.753 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.044 4.044 3 N -0.214 5.214 4 C -0.122 4.122 5 C -0.193 4.193 6 C 0.399 3.601 7 O -0.443 6.443 8 N -0.314 5.314 9 C -0.075 4.075 10 C 0.056 3.944 11 H 0.095 0.905 12 N -0.350 5.350 13 C -0.379 4.379 14 H 0.091 0.909 15 C -0.204 4.204 16 N -0.576 5.576 17 Si 0.737 3.263 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.211 1.211 21 C -0.178 4.178 22 C 0.039 3.961 23 H 0.094 0.906 24 C -0.218 4.218 25 N -0.108 5.108 26 C -0.078 4.078 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.210 0.790 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.782 -3.053 -13.709 16.057 hybrid contribution 0.056 -0.370 0.946 1.017 sum -7.726 -3.422 -12.763 15.307 Atomic orbital electron populations 1.20228 0.84673 1.03954 1.03767 1.23393 0.95801 0.81398 1.03826 1.70128 1.02374 1.28031 1.20903 1.23449 0.95260 0.91951 1.01555 1.20641 0.85044 0.94986 1.18654 1.16268 0.81143 0.85863 0.76823 1.90695 1.86278 1.14487 1.52868 1.47971 1.04682 1.09205 1.69504 1.23925 1.03388 0.80436 0.99755 1.21345 0.91035 0.96313 0.85693 0.90483 1.42331 1.85683 1.07190 0.99770 1.19200 1.42556 0.87554 0.88628 0.90879 1.24759 1.02265 0.96396 0.96986 1.69651 1.56154 1.19138 1.12699 0.86281 0.78089 0.81825 0.80074 1.21099 1.21737 1.21099 1.23106 0.97010 0.96468 1.01248 1.21514 0.82327 0.94448 0.97771 0.90636 1.22141 1.02003 1.00833 0.96783 1.44987 1.05169 1.08096 1.52535 1.22283 1.02257 0.79374 1.03878 0.89850 0.88953 0.90841 0.79015 0.88772 0.92012 0.78040 0.93356 0.89621 0.90615 0.91888 0.91595 0.92779 0.90380 0.89905 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.18 36.01 0.37 -0.26 16 2 C 0.22 3.18 7.88 -155.62 -1.23 1.96 16 3 N -0.50 -8.53 11.20 -10.59 -0.12 -8.65 16 4 C 0.03 0.54 10.21 -17.48 -0.18 0.36 16 5 C -0.08 -1.37 6.86 -82.14 -0.56 -1.94 16 6 C 0.61 11.39 7.62 -12.81 -0.10 11.29 16 7 O -0.56 -11.15 13.78 5.21 0.07 -11.08 16 8 N -0.58 -10.15 3.07 -164.50 -0.50 -10.66 16 9 C 0.05 0.84 4.98 -2.52 -0.01 0.83 16 10 C 0.17 3.03 3.72 -65.79 -0.24 2.78 16 11 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 12 N -0.71 -16.79 5.24 -51.35 -0.27 -17.05 16 13 C -0.25 -6.57 9.96 -15.06 -0.15 -6.72 16 14 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 15 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 16 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 17 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 C -0.14 -2.08 6.07 -24.90 -0.15 -2.23 16 22 C 0.14 2.29 3.46 -66.95 -0.23 2.05 16 23 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 24 C -0.16 -2.19 9.09 37.16 0.34 -1.85 16 25 N -0.43 -6.54 3.17 -117.27 -0.37 -6.91 16 26 C 0.06 0.75 10.62 59.85 0.64 1.39 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.50 7.13 -51.93 -0.37 0.13 16 30 H 0.19 3.09 4.73 -52.49 -0.25 2.84 16 31 H 0.09 1.75 5.31 -51.93 -0.28 1.48 16 32 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16 33 H 0.39 10.01 7.86 -40.82 -0.32 9.69 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.02 6.86 -51.93 -0.36 0.66 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.66 7.18 -51.93 -0.37 0.29 16 42 H 0.11 1.45 6.12 -51.93 -0.32 1.14 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -33.33 338.83 -8.01 -41.33 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.01 Total: 10.51 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -1.61 Total: 7.36 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -0.54 Total: -70.29 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.07 Total: -11.08 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.33 -8.01 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989348329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.148 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds