Wall clock time and date at job start Tue Mar 31 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30857 * 125.41860 * 2 1 4 4 C 1.33319 * 109.68211 * 179.79088 * 3 2 1 5 5 C 1.36655 * 107.78642 * 0.38284 * 4 3 2 6 6 C 1.46767 * 126.84548 * 179.89999 * 5 4 3 7 7 O 1.21679 * 120.00221 * 188.07971 * 6 5 4 8 8 N 1.34774 * 119.99911 * 8.06902 * 6 5 4 9 9 C 1.47430 * 125.64922 * 358.76380 * 8 6 5 10 10 C 1.54911 * 104.83158 * 155.88965 * 9 8 6 11 11 H 1.09000 * 111.00288 * 155.08738 * 10 9 8 12 12 N 1.46500 * 111.03489 * 278.91917 * 10 9 8 13 13 C 1.36942 * 120.00166 * 267.21711 * 12 10 9 14 14 H 1.08001 * 119.99803 * 359.97438 * 13 12 10 15 15 C 1.38812 * 119.99896 * 180.02562 * 13 12 10 16 16 N 1.31612 * 120.00371 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47153 * 59.99582 * 17 15 13 19 19 H 1.48499 * 109.47044 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47033 * 299.99566 * 17 15 13 21 21 C 1.55148 * 101.58179 * 37.00915 * 10 9 8 22 22 C 1.47026 * 125.64969 * 178.78130 * 8 6 5 23 23 H 1.08993 * 109.88407 * 300.46294 * 22 8 6 24 24 C 1.53007 * 109.87973 * 61.62704 * 22 8 6 25 25 N 1.34488 * 125.41439 * 180.02562 * 2 1 3 26 26 C 1.46497 * 126.47729 * 359.97438 * 25 2 1 27 27 H 1.09005 * 109.47024 * 269.97130 * 1 2 3 28 28 H 1.09002 * 109.47149 * 29.96630 * 1 2 3 29 29 H 1.08996 * 109.47425 * 149.97340 * 1 2 3 30 30 H 1.07998 * 126.10591 * 180.28119 * 4 3 2 31 31 H 1.09000 * 110.36548 * 37.05284 * 9 8 6 32 32 H 1.08999 * 110.45583 * 274.77747 * 9 8 6 33 33 H 0.97001 * 120.00340 * 87.21681 * 12 10 9 34 34 H 0.96996 * 120.00831 * 180.02562 * 16 15 13 35 35 H 1.09002 * 110.72133 * 206.13107 * 21 10 9 36 36 H 1.09002 * 110.72114 * 82.86526 * 21 10 9 37 37 H 1.08998 * 109.46991 * 177.80795 * 24 22 8 38 38 H 1.08994 * 109.46650 * 297.81049 * 24 22 8 39 39 H 1.08998 * 109.46975 * 57.80453 * 24 22 8 40 40 H 1.09001 * 109.47650 * 274.82824 * 26 25 2 41 41 H 1.09002 * 109.46821 * 34.83457 * 26 25 2 42 42 H 1.09003 * 109.47170 * 154.82664 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0046 5 6 3.5975 -0.6608 -0.0011 6 6 4.8028 -1.4983 -0.0010 7 8 4.7076 -2.7016 -0.1545 8 7 6.0151 -0.9346 0.1689 9 6 6.2764 0.5064 0.3388 10 6 7.6295 0.5782 1.0896 11 1 8.1342 1.5247 0.8956 12 7 7.4444 0.3703 2.5279 13 6 7.2695 1.4452 3.3583 14 1 7.2685 2.4462 2.9528 15 6 7.0947 1.2481 4.7212 16 7 7.0965 0.0283 5.2153 17 14 6.8554 2.7143 5.8537 18 1 5.6427 3.4656 5.4412 19 1 6.6913 2.2389 7.2509 20 1 8.0415 3.6038 5.7691 21 6 8.4031 -0.6056 0.4516 22 6 7.2961 -1.6546 0.2153 23 1 7.2872 -2.3749 1.0333 24 6 7.5366 -2.3747 -1.1132 25 7 2.2864 -1.0961 -0.0005 26 6 1.8311 -2.4885 -0.0006 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3634 -0.8897 -0.5142 30 1 4.3978 1.3721 0.0100 31 1 5.4877 0.9675 0.9333 32 1 6.3546 0.9964 -0.6317 33 1 7.4458 -0.5287 2.8922 34 1 6.9740 -0.1095 6.1676 35 1 9.1571 -0.9889 1.1390 36 1 8.8576 -0.3052 -0.4925 37 1 8.5051 -2.8739 -1.0857 38 1 6.7514 -3.1135 -1.2733 39 1 7.5245 -1.6495 -1.9269 40 1 1.6363 -2.8072 1.0234 41 1 0.9162 -2.5715 -0.5873 42 1 2.6020 -3.1228 -0.4381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989348329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:32 Heat of formation + Delta-G solvation = 29.454575 kcal Electronic energy + Delta-G solvation = -24295.634731 eV Core-core repulsion = 20890.622857 eV Total energy + Delta-G solvation = -3405.011874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.33881 -41.00844 -38.73187 -35.85952 -35.14184 -33.65126 -33.13504 -32.14661 -30.17298 -28.67104 -27.78411 -26.90849 -25.74264 -24.39493 -22.61982 -21.77009 -20.77915 -20.26134 -19.27135 -18.03564 -17.79108 -17.25519 -17.02769 -16.45222 -16.15458 -15.49454 -15.40276 -15.16869 -14.78814 -14.46947 -14.25779 -14.18335 -14.15401 -13.71316 -13.50148 -13.33961 -13.20410 -13.13770 -13.06343 -12.84387 -12.70163 -12.26200 -12.21213 -11.95651 -11.63794 -11.49746 -11.41818 -10.99192 -10.88977 -10.73802 -9.78067 -9.47679 -8.97819 -7.93422 -5.21916 0.24089 1.37308 1.48180 1.50772 1.55781 1.74986 2.18660 2.27125 2.56853 3.32711 3.39167 3.46119 3.79398 3.84402 3.89697 3.93618 3.95214 4.12131 4.24898 4.28362 4.36793 4.49253 4.51880 4.68711 4.69399 4.71704 4.75165 4.75543 4.93649 5.01095 5.07537 5.13065 5.19515 5.22165 5.35664 5.42493 5.50409 5.56332 6.07482 6.27629 6.46164 6.81899 7.05591 7.34506 8.09474 8.30960 9.29913 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.005899 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.787560 B = 4745.210159 C = 6217.301513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.226 3.774 3 N -0.528 5.528 4 C 0.025 3.975 5 C -0.108 4.108 6 C 0.601 3.399 7 O -0.584 6.584 8 N -0.586 5.586 9 C 0.060 3.940 10 C 0.157 3.843 11 H 0.095 0.905 12 N -0.725 5.725 13 C -0.235 4.235 14 H 0.086 0.914 15 C -0.076 4.076 16 N -0.972 5.972 17 Si 0.967 3.033 18 H -0.282 1.282 19 H -0.303 1.303 20 H -0.272 1.272 21 C -0.122 4.122 22 C 0.137 3.863 23 H 0.044 0.956 24 C -0.147 4.147 25 N -0.432 5.432 26 C 0.061 3.939 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.198 0.802 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.369 0.631 34 H 0.248 0.752 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 -2.143 -15.647 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.036 4.036 3 N -0.248 5.248 4 C -0.128 4.128 5 C -0.224 4.224 6 C 0.391 3.609 7 O -0.467 6.467 8 N -0.316 5.316 9 C -0.065 4.065 10 C 0.047 3.953 11 H 0.112 0.888 12 N -0.362 5.362 13 C -0.367 4.367 14 H 0.104 0.896 15 C -0.268 4.268 16 N -0.623 5.623 17 Si 0.797 3.203 18 H -0.208 1.208 19 H -0.229 1.229 20 H -0.198 1.198 21 C -0.161 4.161 22 C 0.034 3.966 23 H 0.062 0.938 24 C -0.205 4.205 25 N -0.113 5.113 26 C -0.080 4.080 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.214 0.786 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.201 0.799 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.144 0.856 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.431 -2.016 -15.666 17.905 hybrid contribution 0.215 -0.687 1.437 1.607 sum -8.216 -2.703 -14.229 16.652 Atomic orbital electron populations 1.20508 0.80813 1.06069 1.05147 1.24414 0.97726 0.80545 1.00933 1.70141 1.02485 1.29479 1.22674 1.23614 0.95889 0.92050 1.01272 1.20666 0.85919 0.95156 1.20697 1.16533 0.81814 0.85833 0.76702 1.90671 1.86673 1.15292 1.54071 1.48088 1.04859 1.09647 1.69017 1.23811 1.01382 0.80232 1.01030 1.21683 0.92323 0.98403 0.82912 0.88766 1.42524 1.85892 1.05705 1.02122 1.19664 1.39250 0.88776 0.88962 0.89588 1.25516 1.03950 0.98516 0.98789 1.69820 1.59118 1.21175 1.12189 0.85301 0.78301 0.79116 0.77613 1.20792 1.22931 1.19801 1.23034 0.96036 0.94433 1.02589 1.21614 0.82286 0.94456 0.98203 0.93766 1.22031 1.02419 1.00479 0.95548 1.45271 1.04438 1.09509 1.52105 1.22475 1.03292 0.77369 1.04820 0.88633 0.87892 0.87688 0.78568 0.90966 0.88231 0.79934 0.94362 0.90261 0.86606 0.89588 0.93742 0.91194 0.89963 0.85578 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.18 71.24 0.73 -0.32 16 2 C 0.23 6.26 7.88 138.20 1.09 7.35 16 3 N -0.53 -17.83 11.20 -187.40 -2.10 -19.93 16 4 C 0.03 0.88 10.21 84.10 0.86 1.74 16 5 C -0.11 -3.86 6.86 40.01 0.27 -3.59 16 6 C 0.60 22.81 7.62 86.47 0.66 23.47 16 7 O -0.58 -23.82 13.78 -4.28 -0.06 -23.88 16 8 N -0.59 -20.30 3.07 -792.59 -2.43 -22.73 16 9 C 0.06 1.93 4.98 86.85 0.43 2.36 16 10 C 0.16 5.40 3.72 46.38 0.17 5.57 16 11 H 0.09 2.95 8.09 -2.39 -0.02 2.93 16 12 N -0.72 -34.39 5.24 -316.38 -1.66 -36.04 16 13 C -0.23 -12.39 9.96 84.03 0.84 -11.55 16 14 H 0.09 4.23 7.83 -2.91 -0.02 4.20 16 15 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 16 N -0.97 -59.87 13.06 21.65 0.28 -59.58 16 17 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 C -0.12 -3.41 6.07 31.78 0.19 -3.22 16 22 C 0.14 4.33 3.46 45.34 0.16 4.49 16 23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 24 C -0.15 -3.79 9.09 71.98 0.65 -3.13 16 25 N -0.43 -12.89 3.17 -524.94 -1.67 -14.55 16 26 C 0.06 1.36 10.62 127.77 1.36 2.71 16 27 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 0.97 7.13 -2.39 -0.02 0.95 16 30 H 0.20 6.30 4.73 -2.91 -0.01 6.28 16 31 H 0.07 2.68 5.31 -2.39 -0.01 2.67 16 32 H 0.10 2.46 8.04 -2.39 -0.02 2.44 16 33 H 0.37 19.75 7.86 -92.71 -0.73 19.02 16 34 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 36 H 0.12 2.35 7.85 -2.39 -0.02 2.33 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.13 1.62 7.18 -2.39 -0.02 1.60 16 42 H 0.09 2.38 6.12 -2.39 -0.01 2.37 16 Total: -1.00 -75.09 338.83 2.59 -72.50 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: 0.31 Total: 34.19 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 7.87 Total: 22.08 kcal Atomic # 7 Polarization: -145.27 SS G_CDS: -7.57 Total: -152.84 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -75.09 2.59 -72.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989348329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.956 kcal (2) G-P(sol) polarization free energy of solvation -75.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds