Wall clock time and date at job start Tue Mar 31 2020 03:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.70505 * 2 1 4 4 C 1.53197 * 109.58880 * 120.34985 * 2 1 3 5 5 H 1.09001 * 109.52096 * 294.39167 * 4 2 1 6 6 N 1.46500 * 109.49644 * 54.47043 * 4 2 1 7 7 C 1.34771 * 120.00270 * 204.84435 * 6 4 2 8 8 O 1.21606 * 119.99926 * 359.97438 * 7 6 4 9 9 C 1.47433 * 120.00160 * 180.02562 * 7 6 4 10 10 C 1.41285 * 126.41370 * 0.02562 * 9 7 6 11 11 N 1.30451 * 108.02253 * 179.72025 * 10 9 7 12 12 N 1.39939 * 108.89525 * 0.40424 * 11 10 9 13 13 C 1.46494 * 125.75102 * 179.84799 * 12 11 10 14 14 C 1.34256 * 108.49148 * 359.58299 * 12 11 10 15 15 C 1.53037 * 109.31438 * 174.42211 * 4 2 1 16 16 C 1.53041 * 109.53779 * 298.63827 * 15 4 2 17 17 C 1.53188 * 109.31389 * 61.36489 * 16 15 4 18 18 N 1.46923 * 108.77533 * 305.36139 * 17 16 15 19 19 C 1.36931 * 120.63456 * 233.60661 * 18 17 16 20 20 H 1.08007 * 120.00173 * 150.16941 * 19 18 17 21 21 C 1.38811 * 120.00159 * 330.17287 * 19 18 17 22 22 N 1.31619 * 119.99960 * 344.49416 * 21 19 18 23 23 Si 1.86798 * 120.00050 * 164.49087 * 21 19 18 24 24 H 1.48493 * 109.47398 * 59.99882 * 23 21 19 25 25 H 1.48510 * 109.47079 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47040 * 299.99882 * 23 21 19 27 27 H 1.09004 * 109.47104 * 299.65045 * 1 2 3 28 28 H 1.08993 * 109.47010 * 59.64712 * 1 2 3 29 29 H 1.08997 * 109.47095 * 179.64739 * 1 2 3 30 30 H 0.97003 * 120.00017 * 24.83551 * 6 4 2 31 31 H 1.08002 * 125.98859 * 359.97438 * 10 9 7 32 32 H 1.09000 * 109.47657 * 269.69037 * 13 12 11 33 33 H 1.09011 * 109.47068 * 149.69091 * 13 12 11 34 34 H 1.09002 * 109.47490 * 29.69121 * 13 12 11 35 35 H 1.07997 * 126.29553 * 180.26213 * 14 12 11 36 36 H 1.08998 * 109.45954 * 58.65545 * 15 4 2 37 37 H 1.08995 * 109.45839 * 178.61547 * 15 4 2 38 38 H 1.09003 * 109.49539 * 181.31845 * 16 15 4 39 39 H 1.09007 * 109.49425 * 301.40902 * 16 15 4 40 40 H 1.09000 * 109.58752 * 65.15386 * 17 16 15 41 41 H 1.09004 * 109.58455 * 185.57735 * 17 16 15 42 42 H 0.96993 * 120.00203 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2455 5 1 1.7660 -0.1671 2.1371 6 7 1.4514 -2.0678 1.3073 7 6 1.3313 -2.6975 2.4928 8 8 1.7149 -2.1547 3.5112 9 6 0.7359 -4.0448 2.5550 10 6 0.2495 -4.7980 1.4630 11 7 -0.1914 -5.9365 1.9225 12 7 -0.0195 -5.9620 3.3110 13 6 -0.3920 -7.0656 4.1995 14 6 0.5498 -4.8069 3.6909 15 6 3.5675 -0.8479 1.1702 16 6 3.9569 -1.6657 -0.0634 17 6 3.4650 -0.9470 -1.3236 18 7 2.0226 -0.6997 -1.1944 19 6 1.1537 -1.1132 -2.1686 20 1 0.1397 -1.3803 -1.9100 21 6 1.5762 -1.1892 -3.4887 22 7 2.6869 -0.5884 -3.8599 23 14 0.5684 -2.1442 -4.7384 24 1 -0.7921 -1.5564 -4.8304 25 1 1.2298 -2.0730 -6.0661 26 1 0.4668 -3.5631 -4.3120 27 1 -0.3633 0.5084 0.8931 28 1 -0.3633 0.5193 -0.8867 29 1 -0.3633 -1.0276 -0.0063 30 1 1.1457 -2.5009 0.4950 31 1 0.2474 -4.4874 0.4286 32 1 -1.4150 -6.9226 4.5474 33 1 0.2831 -7.0869 5.0552 34 1 -0.3210 -8.0084 3.6572 35 1 0.8138 -4.5257 4.6996 36 1 4.0061 0.1474 1.0993 37 1 3.9378 -1.3446 2.0670 38 1 5.0412 -1.7695 -0.1035 39 1 3.4983 -2.6528 -0.0050 40 1 3.9903 0.0020 -1.4316 41 1 3.6518 -1.5719 -2.1970 42 1 2.9819 -0.6412 -4.7823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993031966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:19 Heat of formation + Delta-G solvation = 61.626835 kcal Electronic energy + Delta-G solvation = -24363.188829 eV Core-core repulsion = 20959.572049 eV Total energy + Delta-G solvation = -3403.616780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31292 -39.32118 -37.33950 -33.89247 -33.49257 -32.30998 -31.60885 -30.34855 -29.29874 -27.19498 -26.10076 -24.96983 -23.05655 -21.74210 -20.99773 -20.70983 -19.87104 -18.59695 -17.85684 -16.37990 -15.81372 -15.71912 -15.28805 -14.82765 -14.55760 -14.53689 -13.90618 -13.72421 -13.39789 -13.12563 -13.06240 -12.85047 -12.71553 -12.65862 -12.47584 -11.80439 -11.22413 -11.18068 -11.04619 -10.93956 -10.67790 -10.56909 -10.48191 -10.08642 -9.97488 -9.63077 -9.61806 -9.44635 -9.26072 -8.74017 -8.48520 -8.29950 -6.64359 -5.79441 -3.24832 1.57276 2.27624 2.28367 3.37078 3.43296 3.44229 3.78299 3.81973 4.38356 4.47187 4.71289 4.84612 4.96408 5.10752 5.28329 5.35514 5.36415 5.45683 5.62623 5.66253 5.80974 5.85624 6.02742 6.18019 6.27920 6.37200 6.45380 6.48341 6.58725 6.73044 6.73794 6.75070 6.83633 6.99065 7.02903 7.20357 7.41585 7.51082 7.68699 7.79715 8.17472 8.44377 8.77666 9.20276 9.83382 10.41172 11.28540 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015724 B = 0.005266 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.327801 B = 5315.360649 C = 6355.721583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.136 3.864 5 H 0.076 0.924 6 N -0.696 5.696 7 C 0.589 3.411 8 O -0.567 6.567 9 C -0.285 4.285 10 C 0.086 3.914 11 N -0.301 5.301 12 N -0.370 5.370 13 C 0.099 3.901 14 C 0.119 3.881 15 C -0.121 4.121 16 C -0.140 4.140 17 C 0.172 3.828 18 N -0.586 5.586 19 C -0.257 4.257 20 H 0.070 0.930 21 C 0.008 3.992 22 N -0.900 5.900 23 Si 0.898 3.102 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.407 0.593 31 H 0.193 0.807 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.186 0.814 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.017 0.983 41 H 0.085 0.915 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -8.507 13.814 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.030 3.970 5 H 0.094 0.906 6 N -0.346 5.346 7 C 0.376 3.624 8 O -0.448 6.448 9 C -0.300 4.300 10 C -0.102 4.102 11 N -0.121 5.121 12 N -0.149 5.149 13 C -0.042 4.042 14 C -0.032 4.032 15 C -0.159 4.159 16 C -0.179 4.179 17 C 0.047 3.953 18 N -0.309 5.309 19 C -0.386 4.386 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.728 3.272 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.210 1.210 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.243 0.757 31 H 0.210 0.790 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.203 0.797 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.103 0.897 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.817 -9.342 14.110 17.347 hybrid contribution -0.150 0.070 -0.927 0.941 sum -3.968 -9.273 13.183 16.599 Atomic orbital electron populations 1.21776 0.95644 1.01500 1.00363 1.20729 0.93343 0.93901 0.86834 0.94352 1.21513 0.92819 0.83009 0.99694 0.90623 1.45767 1.61532 1.18453 1.08804 1.17224 0.77815 0.83634 0.83738 1.90710 1.51937 1.67562 1.34618 1.20421 1.17188 0.99265 0.93075 1.24224 0.95110 0.90652 1.00187 1.77196 1.25100 1.21786 0.88036 1.48403 1.46435 1.13950 1.06161 1.21930 1.01737 0.88248 0.92299 1.22912 0.94309 0.85781 1.00165 1.21767 0.95604 1.00335 0.98223 1.22140 0.98846 0.99648 0.97311 1.20781 0.83196 0.97091 0.94273 1.44144 1.03077 1.64888 1.18828 1.19098 0.95180 1.38192 0.86146 0.91261 1.25092 0.97762 0.99345 0.96977 1.70012 1.24029 1.43506 1.16787 0.86444 0.79652 0.80248 0.80822 1.20930 1.21773 1.20966 0.94227 0.91855 0.92735 0.75659 0.79005 0.90422 0.89238 0.89007 0.79726 0.92031 0.93120 0.93577 0.92777 0.96450 0.89710 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.72 37.16 0.29 -2.16 16 2 C 0.16 3.13 3.20 -67.60 -0.22 2.92 16 3 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.14 2.44 2.32 -67.81 -0.16 2.29 16 5 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 6 N -0.70 -11.89 3.46 -54.76 -0.19 -12.07 16 7 C 0.59 10.07 7.78 -12.52 -0.10 9.97 16 8 O -0.57 -11.08 16.56 5.27 0.09 -10.99 16 9 C -0.28 -4.20 6.13 -105.07 -0.64 -4.84 16 10 C 0.09 1.22 11.50 -16.98 -0.20 1.03 16 11 N -0.30 -4.25 12.50 30.86 0.39 -3.86 16 12 N -0.37 -4.21 3.98 -67.60 -0.27 -4.48 16 13 C 0.10 0.62 11.44 59.84 0.68 1.30 16 14 C 0.12 1.45 11.30 -16.56 -0.19 1.27 16 15 C -0.12 -2.16 5.58 -26.69 -0.15 -2.31 16 16 C -0.14 -2.68 5.93 -26.61 -0.16 -2.83 16 17 C 0.17 3.91 5.28 -3.71 -0.02 3.89 16 18 N -0.59 -13.36 2.64 -164.77 -0.44 -13.79 16 19 C -0.26 -6.37 8.58 -15.06 -0.13 -6.50 16 20 H 0.07 1.66 6.23 -52.48 -0.33 1.33 16 21 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 22 N -0.90 -25.04 11.23 55.49 0.62 -24.41 16 23 Si 0.90 20.75 29.58 -169.99 -5.03 15.72 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 29 H 0.05 0.97 6.37 -51.93 -0.33 0.64 16 30 H 0.41 7.03 6.72 -40.82 -0.27 6.75 16 31 H 0.19 2.49 7.50 -52.49 -0.39 2.10 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.05 7.53 -51.92 -0.39 0.66 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 2.17 6.15 -51.93 -0.32 1.85 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -31.19 338.36 -6.98 -38.17 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.19 Total: 6.50 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.07 Total: 4.12 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.12 Total: -58.62 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.19 -6.98 -38.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993031966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.800 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds