Wall clock time and date at job start Tue Mar 31 2020 03:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.70505 * 2 1 4 4 C 1.53197 * 109.58880 * 120.34985 * 2 1 3 5 5 H 1.09001 * 109.52096 * 294.39167 * 4 2 1 6 6 N 1.46500 * 109.49644 * 54.47043 * 4 2 1 7 7 C 1.34771 * 120.00270 * 204.84435 * 6 4 2 8 8 O 1.21606 * 119.99926 * 359.97438 * 7 6 4 9 9 C 1.47433 * 120.00160 * 180.02562 * 7 6 4 10 10 C 1.41285 * 126.41370 * 0.02562 * 9 7 6 11 11 N 1.30451 * 108.02253 * 179.72025 * 10 9 7 12 12 N 1.39939 * 108.89525 * 0.40424 * 11 10 9 13 13 C 1.46494 * 125.75102 * 179.84799 * 12 11 10 14 14 C 1.34256 * 108.49148 * 359.58299 * 12 11 10 15 15 C 1.53037 * 109.31438 * 174.42211 * 4 2 1 16 16 C 1.53041 * 109.53779 * 298.63827 * 15 4 2 17 17 C 1.53188 * 109.31389 * 61.36489 * 16 15 4 18 18 N 1.46923 * 108.77533 * 305.36139 * 17 16 15 19 19 C 1.36931 * 120.63456 * 233.60661 * 18 17 16 20 20 H 1.08007 * 120.00173 * 150.16941 * 19 18 17 21 21 C 1.38811 * 120.00159 * 330.17287 * 19 18 17 22 22 N 1.31619 * 119.99960 * 344.49416 * 21 19 18 23 23 Si 1.86798 * 120.00050 * 164.49087 * 21 19 18 24 24 H 1.48493 * 109.47398 * 59.99882 * 23 21 19 25 25 H 1.48510 * 109.47079 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47040 * 299.99882 * 23 21 19 27 27 H 1.09004 * 109.47104 * 299.65045 * 1 2 3 28 28 H 1.08993 * 109.47010 * 59.64712 * 1 2 3 29 29 H 1.08997 * 109.47095 * 179.64739 * 1 2 3 30 30 H 0.97003 * 120.00017 * 24.83551 * 6 4 2 31 31 H 1.08002 * 125.98859 * 359.97438 * 10 9 7 32 32 H 1.09000 * 109.47657 * 269.69037 * 13 12 11 33 33 H 1.09011 * 109.47068 * 149.69091 * 13 12 11 34 34 H 1.09002 * 109.47490 * 29.69121 * 13 12 11 35 35 H 1.07997 * 126.29553 * 180.26213 * 14 12 11 36 36 H 1.08998 * 109.45954 * 58.65545 * 15 4 2 37 37 H 1.08995 * 109.45839 * 178.61547 * 15 4 2 38 38 H 1.09003 * 109.49539 * 181.31845 * 16 15 4 39 39 H 1.09007 * 109.49425 * 301.40902 * 16 15 4 40 40 H 1.09000 * 109.58752 * 65.15386 * 17 16 15 41 41 H 1.09004 * 109.58455 * 185.57735 * 17 16 15 42 42 H 0.96993 * 120.00203 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2455 5 1 1.7660 -0.1671 2.1371 6 7 1.4514 -2.0678 1.3073 7 6 1.3313 -2.6975 2.4928 8 8 1.7149 -2.1547 3.5112 9 6 0.7359 -4.0448 2.5550 10 6 0.2495 -4.7980 1.4630 11 7 -0.1914 -5.9365 1.9225 12 7 -0.0195 -5.9620 3.3110 13 6 -0.3920 -7.0656 4.1995 14 6 0.5498 -4.8069 3.6909 15 6 3.5675 -0.8479 1.1702 16 6 3.9569 -1.6657 -0.0634 17 6 3.4650 -0.9470 -1.3236 18 7 2.0226 -0.6997 -1.1944 19 6 1.1537 -1.1132 -2.1686 20 1 0.1397 -1.3803 -1.9100 21 6 1.5762 -1.1892 -3.4887 22 7 2.6869 -0.5884 -3.8599 23 14 0.5684 -2.1442 -4.7384 24 1 -0.7921 -1.5564 -4.8304 25 1 1.2298 -2.0730 -6.0661 26 1 0.4668 -3.5631 -4.3120 27 1 -0.3633 0.5084 0.8931 28 1 -0.3633 0.5193 -0.8867 29 1 -0.3633 -1.0276 -0.0063 30 1 1.1457 -2.5009 0.4950 31 1 0.2474 -4.4874 0.4286 32 1 -1.4150 -6.9226 4.5474 33 1 0.2831 -7.0869 5.0552 34 1 -0.3210 -8.0084 3.6572 35 1 0.8138 -4.5257 4.6996 36 1 4.0061 0.1474 1.0993 37 1 3.9378 -1.3446 2.0670 38 1 5.0412 -1.7695 -0.1035 39 1 3.4983 -2.6528 -0.0050 40 1 3.9903 0.0020 -1.4316 41 1 3.6518 -1.5719 -2.1970 42 1 2.9819 -0.6412 -4.7823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993031966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:19 Heat of formation + Delta-G solvation = 42.180028 kcal Electronic energy + Delta-G solvation = -24364.032106 eV Core-core repulsion = 20959.572049 eV Total energy + Delta-G solvation = -3404.460057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31073 -40.74730 -38.86987 -35.52395 -34.45809 -33.85283 -33.26802 -31.56935 -30.77827 -28.19753 -27.51604 -26.76606 -24.35586 -23.28739 -22.30739 -21.97394 -21.12165 -20.14830 -18.96182 -18.19376 -17.10231 -16.77451 -16.60615 -16.41286 -15.92169 -15.63825 -15.51435 -15.18717 -14.81666 -14.59576 -14.45604 -14.18466 -13.81219 -13.51438 -13.46720 -13.41340 -12.91215 -12.81267 -12.65244 -12.41165 -12.31114 -12.15359 -12.03526 -11.89584 -11.61967 -11.31224 -10.97934 -10.78372 -10.55524 -10.44467 -9.94261 -9.54774 -8.55443 -7.77485 -5.23817 0.59573 1.17204 1.49825 1.53066 1.55057 1.59850 2.49738 2.57254 2.58539 3.38981 3.56639 3.64574 3.85556 4.03706 4.14187 4.19743 4.23024 4.27424 4.44691 4.45445 4.60571 4.62824 4.71477 4.72108 4.73504 4.88075 5.00541 5.05162 5.11035 5.19146 5.28602 5.38829 5.41455 5.51440 5.60901 5.74143 5.79651 5.85636 5.92411 6.48952 6.51832 6.83042 7.24248 7.44472 7.94480 8.48202 9.29072 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015724 B = 0.005266 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.327801 B = 5315.360649 C = 6355.721583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.031 0.969 4 C 0.145 3.855 5 H 0.081 0.919 6 N -0.695 5.695 7 C 0.593 3.407 8 O -0.594 6.594 9 C -0.315 4.315 10 C 0.081 3.919 11 N -0.325 5.325 12 N -0.361 5.361 13 C 0.086 3.914 14 C 0.135 3.865 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.246 4.246 20 H 0.080 0.920 21 C -0.047 4.047 22 N -0.936 5.936 23 Si 0.956 3.044 24 H -0.278 1.278 25 H -0.304 1.304 26 H -0.276 1.276 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.406 0.594 31 H 0.194 0.806 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.213 0.787 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.051 0.949 40 H -0.005 1.005 41 H 0.054 0.946 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.648 -9.929 16.019 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.049 0.951 4 C 0.038 3.962 5 H 0.099 0.901 6 N -0.344 5.344 7 C 0.382 3.618 8 O -0.477 6.477 9 C -0.330 4.330 10 C -0.106 4.106 11 N -0.146 5.146 12 N -0.140 5.140 13 C -0.052 4.052 14 C -0.018 4.018 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.055 3.945 18 N -0.319 5.319 19 C -0.377 4.377 20 H 0.097 0.903 21 C -0.242 4.242 22 N -0.582 5.582 23 Si 0.785 3.215 24 H -0.204 1.204 25 H -0.231 1.231 26 H -0.202 1.202 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.242 0.758 31 H 0.211 0.789 32 H 0.113 0.887 33 H 0.139 0.861 34 H 0.115 0.885 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.013 0.987 41 H 0.072 0.928 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.929 -10.800 16.339 20.196 hybrid contribution 0.150 0.472 -1.486 1.566 sum -4.779 -10.328 14.853 18.711 Atomic orbital electron populations 1.21692 0.94281 1.01731 1.00762 1.20850 0.94483 0.93416 0.86220 0.95113 1.21307 0.92762 0.83510 0.98577 0.90144 1.45712 1.61609 1.18059 1.09021 1.17467 0.77139 0.84224 0.83005 1.90688 1.53292 1.68441 1.35269 1.20322 1.19413 0.98796 0.94429 1.24276 0.95188 0.90761 1.00422 1.77143 1.25770 1.21821 0.89855 1.48808 1.44877 1.14652 1.05645 1.22403 1.03594 0.86824 0.92426 1.23309 0.92600 0.85330 1.00585 1.21715 0.95678 1.00418 0.97513 1.21947 0.99593 0.99058 0.95896 1.20557 0.83388 0.95694 0.94901 1.44317 1.02887 1.65406 1.19333 1.19441 0.95605 1.36244 0.86364 0.90264 1.25743 0.98892 1.00825 0.98772 1.70169 1.25901 1.45671 1.16464 0.85517 0.78319 0.79371 0.78259 1.20402 1.23063 1.20239 0.91803 0.93481 0.92505 0.75769 0.78877 0.88714 0.86122 0.88523 0.77029 0.91496 0.92603 0.92151 0.93001 0.98735 0.92806 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.72 71.98 0.56 -3.89 16 2 C 0.16 6.07 3.20 44.97 0.14 6.21 16 3 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.15 5.03 2.32 45.07 0.10 5.13 16 5 H 0.08 2.77 7.58 -2.39 -0.02 2.75 16 6 N -0.69 -22.90 3.46 -445.43 -1.54 -24.45 16 7 C 0.59 19.37 7.78 86.67 0.67 20.05 16 8 O -0.59 -22.15 16.56 -4.05 -0.07 -22.22 16 9 C -0.31 -8.75 6.13 -20.15 -0.12 -8.88 16 10 C 0.08 2.20 11.50 85.65 0.99 3.19 16 11 N -0.33 -8.63 12.50 -56.28 -0.70 -9.33 16 12 N -0.36 -7.20 3.98 -367.78 -1.46 -8.66 16 13 C 0.09 0.77 11.44 127.77 1.46 2.23 16 14 C 0.13 2.90 11.30 84.28 0.95 3.86 16 15 C -0.11 -3.97 5.58 30.62 0.17 -3.80 16 16 C -0.13 -4.74 5.93 30.67 0.18 -4.55 16 17 C 0.18 8.36 5.28 86.36 0.46 8.81 16 18 N -0.60 -27.28 2.64 -675.22 -1.78 -29.06 16 19 C -0.25 -12.24 8.58 84.03 0.72 -11.52 16 20 H 0.08 3.73 6.23 -2.91 -0.02 3.72 16 21 C -0.05 -2.48 4.94 84.86 0.42 -2.06 16 22 N -0.94 -53.61 11.23 21.65 0.24 -53.36 16 23 Si 0.96 43.15 29.58 68.60 2.03 45.18 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 27 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.05 1.78 7.67 -2.39 -0.02 1.77 16 29 H 0.06 1.95 6.37 -2.39 -0.02 1.93 16 30 H 0.41 13.66 6.72 -92.71 -0.62 13.04 16 31 H 0.19 4.94 7.50 -2.91 -0.02 4.92 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.21 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.98 7.53 -2.38 -0.02 1.96 16 40 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.05 2.84 6.15 -2.38 -0.01 2.82 16 42 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -67.26 338.36 3.82 -63.44 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.40 Total: 23.69 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 6.70 Total: 14.78 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -5.25 Total: -124.87 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.07 Total: -22.22 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.26 3.82 -63.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993031966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.620 kcal (2) G-P(sol) polarization free energy of solvation -67.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds