Wall clock time and date at job start Tue Mar 31 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47525 * 2 1 4 4 C 1.50693 * 109.47099 * 120.00263 * 2 1 3 5 5 O 1.21283 * 120.00028 * 94.87970 * 4 2 1 6 6 N 1.34775 * 120.00144 * 274.87510 * 4 2 1 7 7 C 1.46936 * 120.62898 * 4.88287 * 6 4 2 8 8 C 1.53621 * 108.54137 * 126.36686 * 7 6 4 9 9 C 1.53030 * 109.24360 * 54.85821 * 8 7 6 10 10 C 1.53045 * 109.53901 * 298.50590 * 9 8 7 11 11 H 1.08993 * 109.49647 * 301.41764 * 10 9 8 12 12 N 1.46497 * 109.52355 * 181.33338 * 10 9 8 13 13 C 1.36938 * 119.99958 * 85.15075 * 12 10 9 14 14 H 1.07995 * 120.00183 * 359.97438 * 13 12 10 15 15 C 1.38819 * 119.99799 * 179.97438 * 13 12 10 16 16 N 1.31621 * 120.00258 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99596 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47682 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47444 * 120.00366 * 17 15 13 20 20 H 1.48504 * 109.47392 * 239.99654 * 17 15 13 21 21 C 1.46926 * 120.63563 * 185.16101 * 6 4 2 22 22 N 1.46509 * 109.47175 * 240.00059 * 2 1 3 23 23 C 1.34944 * 126.03559 * 325.00458 * 22 2 1 24 24 C 1.35319 * 107.74549 * 180.20640 * 23 22 2 25 25 C 1.39868 * 107.91788 * 359.63543 * 24 23 22 26 26 N 1.30838 * 108.20391 * 0.36715 * 25 24 23 27 27 H 1.08997 * 109.46958 * 295.07439 * 1 2 3 28 28 H 1.08997 * 109.47288 * 55.07193 * 1 2 3 29 29 H 1.08997 * 109.47236 * 175.07095 * 1 2 3 30 30 H 1.08998 * 109.58395 * 246.20070 * 7 6 4 31 31 H 1.09002 * 109.58189 * 6.62584 * 7 6 4 32 32 H 1.09002 * 109.63614 * 294.86076 * 8 7 6 33 33 H 1.09004 * 109.45180 * 174.74052 * 8 7 6 34 34 H 1.09007 * 109.45926 * 178.48733 * 9 8 7 35 35 H 1.09002 * 109.45305 * 58.51920 * 9 8 7 36 36 H 0.97002 * 119.99855 * 265.14541 * 12 10 9 37 37 H 0.96994 * 119.99797 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.58177 * 353.37187 * 21 6 4 39 39 H 1.09004 * 109.58786 * 113.65625 * 21 6 4 40 40 H 1.07998 * 126.12847 * 359.93175 * 23 22 2 41 41 H 1.07998 * 126.04082 * 179.76977 * 24 23 22 42 42 H 1.07997 * 125.90069 * 180.14618 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3187 -1.8877 1.1764 6 7 2.1634 -0.0376 2.3908 7 6 1.7210 1.3593 2.5002 8 6 0.7606 1.4755 3.6936 9 6 1.4483 0.9343 4.9489 10 6 1.7899 -0.5440 4.7484 11 1 0.8778 -1.1031 4.5400 12 7 2.4195 -1.0700 5.9621 13 6 1.6429 -1.5284 6.9927 14 1 0.5664 -1.5017 6.9109 15 6 2.2394 -2.0273 8.1426 16 7 3.5515 -2.0603 8.2421 17 14 1.1801 -2.6519 9.5486 18 1 -0.2538 -2.5072 9.1903 19 1 1.4849 -4.0833 9.8001 20 1 1.4669 -1.8623 10.7732 21 6 2.7570 -0.6849 3.5686 22 7 2.0184 -0.6906 -1.1962 23 6 1.4402 -1.7558 -1.7896 24 6 2.1990 -2.0954 -2.8573 25 6 3.2732 -1.2021 -2.9234 26 7 3.1676 -0.3615 -1.9264 27 1 -0.3633 0.4355 0.9308 28 1 -0.3634 0.5884 -0.8425 29 1 -0.3633 -1.0238 -0.0883 30 1 2.5849 2.0048 2.6586 31 1 1.2062 1.6523 1.5851 32 1 -0.1419 0.8973 3.4951 33 1 0.4961 2.5219 3.8461 34 1 0.7796 1.0398 5.8034 35 1 2.3637 1.4968 5.1326 36 1 3.3864 -1.0937 6.0357 37 1 3.9682 -2.4093 9.0455 38 1 2.9259 -1.7411 3.3588 39 1 3.7049 -0.2043 3.8109 40 1 0.5365 -2.2515 -1.4672 41 1 2.0076 -2.9107 -3.5393 42 1 4.0567 -1.2077 -3.6667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998584607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:01 Heat of formation + Delta-G solvation = 63.564244 kcal Electronic energy + Delta-G solvation = -23736.743090 eV Core-core repulsion = 20333.210322 eV Total energy + Delta-G solvation = -3403.532768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.44213 -40.03411 -37.46195 -34.98953 -34.32455 -32.26633 -31.31332 -30.19450 -29.73001 -28.34178 -25.90770 -24.53653 -23.68638 -22.16058 -21.40630 -21.07339 -19.99135 -18.93222 -17.55515 -17.38389 -17.20024 -15.74071 -15.32148 -14.94671 -14.59114 -14.40766 -14.21743 -14.06380 -13.68756 -13.55299 -13.40542 -13.14410 -12.98095 -12.81280 -12.61199 -12.47594 -12.22878 -11.96050 -11.16656 -11.03723 -10.95389 -10.78674 -10.73881 -10.49046 -10.43031 -10.13576 -10.02259 -9.74697 -9.41583 -8.96374 -8.64284 -8.53247 -7.03688 -5.81709 -3.11767 1.74756 2.17324 2.53354 2.81136 3.03837 3.40382 3.46012 3.48291 4.13803 4.29594 4.45894 4.54487 4.74182 4.78202 4.85912 5.00652 5.10232 5.14471 5.23541 5.42076 5.44190 5.48105 5.53658 5.60746 5.68288 5.71500 5.73863 5.93856 5.94743 6.07311 6.15076 6.31003 6.45770 6.53319 6.59507 6.78925 6.87466 6.97285 7.37992 7.62007 7.65532 8.07547 8.35938 9.47292 10.01976 10.36862 11.40759 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.003420 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.751509 B = 8185.786469 C = 8589.517491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.123 0.877 4 C 0.502 3.498 5 O -0.525 6.525 6 N -0.599 5.599 7 C 0.101 3.899 8 C -0.132 4.132 9 C -0.138 4.138 10 C 0.170 3.830 11 H 0.050 0.950 12 N -0.721 5.721 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.106 3.894 22 N -0.357 5.357 23 C 0.077 3.923 24 C -0.280 4.280 25 C 0.047 3.953 26 N -0.298 5.298 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.170 0.830 41 H 0.147 0.853 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 8.051 -20.349 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.140 0.860 4 C 0.287 3.713 5 O -0.400 6.400 6 N -0.333 5.333 7 C -0.021 4.021 8 C -0.171 4.171 9 C -0.179 4.179 10 C 0.059 3.941 11 H 0.068 0.932 12 N -0.362 5.362 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.016 4.016 22 N -0.139 5.139 23 C -0.069 4.069 24 C -0.309 4.309 25 C -0.139 4.139 26 N -0.119 5.119 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.187 0.813 41 H 0.165 0.835 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.156 8.408 -19.525 22.131 hybrid contribution -0.492 -1.023 0.595 1.282 sum -6.648 7.386 -18.929 21.379 Atomic orbital electron populations 1.22168 0.90392 1.04671 1.04720 1.21144 0.96396 0.97356 0.81387 0.85954 1.20592 0.78869 0.87491 0.84357 1.90753 1.49635 1.15296 1.84297 1.48081 1.60999 1.13236 1.10954 1.21998 0.98727 0.82021 0.99399 1.22008 0.98288 1.01322 0.95470 1.22298 1.00397 0.99066 0.96123 1.20460 0.94854 0.92380 0.86440 0.93175 1.42318 1.06245 1.74136 1.13516 1.19240 0.90336 1.33637 0.93908 0.91084 1.24761 0.95688 1.01866 0.98473 1.69670 1.07752 1.51927 1.28507 0.86113 0.79308 0.78310 0.82410 1.20540 1.21796 1.21827 1.22065 0.96333 0.99409 0.83818 1.48260 1.19647 1.24665 1.21317 1.22434 0.99827 0.90325 0.94307 1.21457 0.99451 1.06287 1.03690 1.23861 0.99099 0.93961 0.97018 1.77348 1.02241 1.24785 1.07503 0.89047 0.90110 0.90551 0.90855 0.90382 0.91734 0.91080 0.91390 0.92360 0.78171 0.93455 0.88907 0.91437 0.81256 0.83549 0.80066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.63 37.16 0.32 -0.92 16 2 C 0.14 1.60 2.86 -69.08 -0.20 1.40 16 3 H 0.12 1.16 6.74 -51.93 -0.35 0.81 16 4 C 0.50 7.53 6.90 -10.99 -0.08 7.46 16 5 O -0.52 -10.18 15.78 5.55 0.09 -10.09 16 6 N -0.60 -8.50 2.97 -172.49 -0.51 -9.02 16 7 C 0.10 1.05 5.94 -3.48 -0.02 1.03 16 8 C -0.13 -1.50 6.10 -26.39 -0.16 -1.66 16 9 C -0.14 -2.23 5.47 -26.69 -0.15 -2.37 16 10 C 0.17 3.28 2.92 -67.81 -0.20 3.08 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.62 16 12 N -0.72 -17.76 5.12 -53.31 -0.27 -18.04 16 13 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 17 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 C 0.11 1.87 5.91 -3.71 -0.02 1.85 16 22 N -0.36 -4.63 3.23 -55.99 -0.18 -4.81 16 23 C 0.08 0.89 10.27 -17.22 -0.18 0.72 16 24 C -0.28 -3.06 10.80 -40.01 -0.43 -3.49 16 25 C 0.05 0.55 12.03 -17.36 -0.21 0.34 16 26 N -0.30 -4.21 12.58 30.62 0.39 -3.82 16 27 H 0.09 0.61 7.18 -51.93 -0.37 0.23 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.61 6.91 -51.93 -0.36 0.25 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.57 4.88 -51.93 -0.25 0.32 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.09 1.88 7.00 -51.93 -0.36 1.52 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.17 1.55 7.14 -52.49 -0.37 1.17 16 41 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -34.69 341.83 -7.37 -42.05 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.16 Total: 8.28 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.56 Total: 0.29 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.14 Total: -62.89 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.69 -7.37 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998584607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.619 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds