Wall clock time and date at job start Tue Mar 31 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46519 * 2 1 4 4 C 1.50697 * 109.47073 * 239.99833 * 2 1 3 5 5 O 1.21282 * 119.99677 * 240.00000 * 4 2 1 6 6 N 1.34776 * 120.00290 * 60.00017 * 4 2 1 7 7 C 1.46498 * 119.99933 * 179.97438 * 6 4 2 8 8 H 1.08997 * 110.64312 * 323.31546 * 7 6 4 9 9 C 1.55157 * 110.72185 * 199.97475 * 7 6 4 10 10 C 1.54915 * 101.58327 * 277.14325 * 9 7 6 11 11 N 1.47420 * 104.82899 * 322.98851 * 10 9 7 12 12 C 1.36938 * 125.64794 * 204.16487 * 11 10 9 13 13 H 1.07993 * 120.00294 * 179.97438 * 12 11 10 14 14 C 1.38816 * 119.99854 * 359.95485 * 12 11 10 15 15 N 1.31622 * 119.99830 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99907 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46966 * 90.00823 * 16 14 12 18 18 H 1.48511 * 109.47098 * 210.00329 * 16 14 12 19 19 H 1.48504 * 109.47295 * 330.00147 * 16 14 12 20 20 C 1.47017 * 108.70690 * 24.12945 * 11 10 9 21 21 C 1.50697 * 109.46754 * 119.99343 * 2 1 3 22 22 C 1.35316 * 126.12346 * 85.00652 * 21 2 1 23 23 C 1.39873 * 107.91987 * 179.97438 * 22 21 2 24 24 N 1.30832 * 108.20166 * 0.02562 * 23 22 21 25 25 N 1.34943 * 126.13122 * 264.99947 * 21 2 1 26 26 C 1.46500 * 126.03414 * 0.26478 * 25 21 2 27 27 H 1.09001 * 109.46519 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47568 * 300.00524 * 1 2 3 29 29 H 1.09002 * 109.46905 * 60.00444 * 1 2 3 30 30 H 0.97002 * 119.99823 * 359.97438 * 6 4 2 31 31 H 1.09006 * 111.00196 * 35.21223 * 9 7 6 32 32 H 1.08995 * 111.00876 * 159.06710 * 9 7 6 33 33 H 1.08999 * 110.36618 * 204.14962 * 10 9 7 34 34 H 1.09005 * 110.45930 * 81.87360 * 10 9 7 35 35 H 0.97005 * 119.99746 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.88728 * 239.52563 * 20 11 10 37 37 H 1.09003 * 110.01584 * 118.42846 * 20 11 10 38 38 H 1.07997 * 126.04396 * 0.02562 * 22 21 2 39 39 H 1.07998 * 125.89584 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.47763 * 269.71272 * 26 25 21 41 41 H 1.09004 * 109.47211 * 29.71722 * 26 25 21 42 42 H 1.09012 * 109.46942 * 149.71408 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1190 6 7 1.7068 -0.2501 -2.4546 7 6 2.1957 -0.9404 -3.6506 8 1 3.2070 -1.3147 -3.4920 9 6 2.1403 -0.0037 -4.8863 10 6 0.6616 -0.1525 -5.3234 11 7 0.3363 -1.5693 -5.0782 12 6 -0.6476 -2.2829 -5.7088 13 1 -0.8073 -3.3210 -5.4575 14 6 -1.4401 -1.6719 -6.6709 15 7 -1.2454 -0.4068 -6.9773 16 14 -2.7819 -2.6456 -7.5317 17 1 -4.0494 -2.5239 -6.7676 18 1 -2.9779 -2.1123 -8.9038 19 1 -2.3851 -4.0746 -7.6081 20 6 1.2439 -2.0894 -4.0451 21 6 2.0323 -0.7103 1.2305 22 6 2.2085 -2.0452 1.3651 23 6 2.6877 -2.2880 2.6565 24 7 2.7949 -1.1402 3.2752 25 7 2.3871 -0.1291 2.3956 26 6 2.3470 1.3053 2.6905 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.1489 0.5384 -2.5436 31 1 2.3632 1.0259 -4.6063 32 1 2.8157 -0.3491 -5.6690 33 1 0.5533 0.0839 -6.3819 34 1 0.0202 0.4933 -4.7236 35 1 -1.7989 0.0201 -7.6499 36 1 1.8180 -2.9262 -4.4431 37 1 0.6725 -2.4127 -3.1750 38 1 2.0142 -2.7912 0.6087 39 1 2.9278 -3.2559 3.0712 40 1 3.3029 1.7575 2.4263 41 1 1.5512 1.7733 2.1109 42 1 2.1569 1.4526 3.7537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014473355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:15 Heat of formation + Delta-G solvation = 72.917007 kcal Electronic energy + Delta-G solvation = -23731.136386 eV Core-core repulsion = 20328.009184 eV Total energy + Delta-G solvation = -3403.127202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40148 -39.61465 -37.30442 -34.38307 -33.80195 -33.02287 -31.71298 -29.34654 -28.86064 -27.25030 -26.79053 -24.90814 -24.30382 -21.56198 -20.99228 -20.24478 -19.80023 -19.41499 -17.08828 -17.06697 -16.51200 -15.79568 -15.54162 -14.89886 -14.74203 -14.53311 -14.05327 -13.76602 -13.69348 -13.29860 -13.16213 -12.88989 -12.65489 -12.48001 -12.32647 -12.13819 -11.99728 -11.64686 -11.42714 -11.08220 -10.90424 -10.78865 -10.62872 -10.42024 -10.14248 -9.92597 -9.63325 -9.52836 -9.26073 -8.76724 -8.63568 -8.39600 -6.86757 -5.69270 -3.09981 1.82542 2.41299 2.78181 2.93105 3.38117 3.42597 3.44032 3.45588 4.26266 4.44780 4.47277 4.67410 4.88434 4.95944 4.97679 5.11620 5.19714 5.30200 5.41820 5.45967 5.48715 5.54567 5.72132 5.74363 5.83512 5.88936 5.98975 6.23045 6.31906 6.34113 6.45139 6.52221 6.71169 6.74980 6.98638 7.02163 7.38704 7.59657 7.70990 7.73591 7.80491 8.31256 8.42353 9.19141 9.79812 10.43961 11.35010 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.003450 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.744980 B = 8113.474772 C = 8267.297958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 H 0.102 0.898 4 C 0.521 3.479 5 O -0.528 6.528 6 N -0.707 5.707 7 C 0.132 3.868 8 H 0.088 0.912 9 C -0.153 4.153 10 C 0.152 3.848 11 N -0.603 5.603 12 C -0.220 4.220 13 H 0.077 0.923 14 C -0.012 4.012 15 N -0.924 5.924 16 Si 0.914 3.086 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.128 3.872 21 C 0.089 3.911 22 C -0.226 4.226 23 C 0.039 3.961 24 N -0.302 5.302 25 N -0.377 5.377 26 C 0.099 3.901 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.400 0.600 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.010 0.990 35 H 0.251 0.749 36 H 0.031 0.969 37 H 0.026 0.974 38 H 0.155 0.845 39 H 0.182 0.818 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.093 5.849 15.119 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 H 0.120 0.880 4 C 0.305 3.695 5 O -0.404 6.404 6 N -0.358 5.358 7 C 0.028 3.972 8 H 0.106 0.894 9 C -0.192 4.192 10 C 0.027 3.973 11 N -0.330 5.330 12 C -0.348 4.348 13 H 0.095 0.905 14 C -0.207 4.207 15 N -0.573 5.573 16 Si 0.745 3.255 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.207 1.207 20 C 0.001 3.999 21 C -0.038 4.038 22 C -0.255 4.255 23 C -0.146 4.146 24 N -0.123 5.123 25 N -0.161 5.161 26 C -0.042 4.042 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.234 0.766 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.173 0.827 39 H 0.199 0.801 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.772 5.879 16.145 18.469 hybrid contribution -1.215 -0.419 -1.164 1.733 sum 5.558 5.460 14.982 16.887 Atomic orbital electron populations 1.21782 0.90928 1.04082 1.02989 1.19781 0.98073 0.99566 0.89515 0.87975 1.19941 0.80541 0.84809 0.84213 1.90714 1.37682 1.25722 1.86295 1.45922 1.52922 1.31814 1.05093 1.22003 0.97570 0.93883 0.83785 0.89448 1.23340 1.02214 0.97700 0.95965 1.21945 0.87125 0.84962 1.03304 1.44506 1.37451 1.08211 1.42790 1.19095 1.07113 0.93951 1.14648 0.90511 1.24763 0.99901 0.96271 0.99750 1.69777 1.41621 1.10225 1.35700 0.86073 0.81658 0.78959 0.78827 1.21678 1.21667 1.20678 1.21674 0.91799 0.94216 0.92177 1.20291 1.01763 0.93631 0.88096 1.21457 1.10894 0.95092 0.98008 1.23865 0.99847 0.96936 0.93963 1.77296 1.22823 0.95832 1.16372 1.48370 1.51704 1.06669 1.09320 1.21811 1.02983 0.75782 1.03650 0.91041 0.91662 0.90682 0.76584 0.91767 0.90572 0.87430 0.97168 0.93779 0.95159 0.95566 0.82702 0.80146 0.90964 0.89674 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.07 37.16 0.34 -1.08 16 2 C -0.05 -0.52 2.74 -92.92 -0.25 -0.77 16 3 H 0.10 0.88 7.50 -51.93 -0.39 0.49 16 4 C 0.52 7.64 7.08 -10.99 -0.08 7.56 16 5 O -0.53 -9.50 13.46 5.56 0.07 -9.43 16 6 N -0.71 -10.30 5.01 -52.03 -0.26 -10.56 16 7 C 0.13 2.27 3.25 -66.09 -0.21 2.05 16 8 H 0.09 1.49 7.69 -51.93 -0.40 1.09 16 9 C -0.15 -2.64 6.64 -24.58 -0.16 -2.80 16 10 C 0.15 3.41 5.87 -2.53 -0.01 3.39 16 11 N -0.60 -14.95 3.39 -170.07 -0.58 -15.52 16 12 C -0.22 -6.03 10.27 -15.06 -0.15 -6.18 16 13 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 14 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 15 N -0.92 -26.04 10.09 55.49 0.56 -25.48 16 16 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.13 2.71 6.98 -3.06 -0.02 2.68 16 21 C 0.09 1.17 5.73 -82.27 -0.47 0.70 16 22 C -0.23 -3.26 9.14 -40.01 -0.37 -3.63 16 23 C 0.04 0.52 12.03 -17.37 -0.21 0.31 16 24 N -0.30 -4.23 12.58 30.62 0.39 -3.85 16 25 N -0.38 -4.65 4.01 -63.88 -0.26 -4.91 16 26 C 0.10 0.76 11.07 59.85 0.66 1.42 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.72 7.56 -51.93 -0.39 0.32 16 30 H 0.40 5.11 8.04 -40.82 -0.33 4.78 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.11 2.78 5.87 -51.93 -0.30 2.47 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 38 H 0.16 2.40 6.80 -52.49 -0.36 2.05 16 39 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.46 7.54 -51.93 -0.39 0.07 16 42 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -33.27 343.15 -7.30 -40.57 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.33 Total: 4.02 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.04 Total: 3.24 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.15 Total: -60.31 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.27 -7.30 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014473355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.487 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds