Wall clock time and date at job start Tue Mar 31 2020 02:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47244 * 2 1 4 4 C 1.50704 * 109.47070 * 119.99393 * 2 1 3 5 5 N 1.30445 * 125.99524 * 300.17404 * 4 2 1 6 6 N 1.39928 * 108.89991 * 180.26220 * 5 4 2 7 7 H 0.97000 * 125.75471 * 179.73432 * 6 5 4 8 8 C 1.34260 * 108.49362 * 359.73444 * 6 5 4 9 9 C 1.38042 * 107.41503 * 0.02562 * 8 6 5 10 10 C 1.47433 * 126.41616 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00362 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99371 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99701 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.90682 * 336.25807 * 13 12 10 15 15 C 1.53781 * 113.61250 * 107.50340 * 13 12 10 16 16 C 1.53780 * 87.08026 * 139.98341 * 15 13 12 17 17 H 1.08996 * 113.69235 * 89.12918 * 16 15 13 18 18 N 1.46506 * 113.61728 * 220.01944 * 16 15 13 19 19 C 1.36931 * 119.99939 * 252.49837 * 18 16 15 20 20 H 1.08000 * 120.00644 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99715 * 179.97438 * 19 18 16 22 22 N 1.31611 * 120.00107 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99746 * 179.72150 * 21 19 18 24 24 H 1.48506 * 109.46826 * 60.00664 * 23 21 19 25 25 H 1.48497 * 109.47051 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47422 * 300.00472 * 23 21 19 27 27 C 1.53780 * 87.08386 * 334.56712 * 16 15 13 28 28 H 1.09000 * 109.46801 * 300.00499 * 1 2 3 29 29 H 1.09004 * 109.46950 * 59.99971 * 1 2 3 30 30 H 1.09001 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47536 * 239.99563 * 2 1 3 32 32 H 1.09000 * 109.47157 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46652 * 299.99921 * 3 2 1 34 34 H 1.08997 * 109.47150 * 59.99907 * 3 2 1 35 35 H 1.08003 * 126.29132 * 180.02562 * 8 6 5 36 36 H 0.97003 * 120.00489 * 0.02562 * 12 10 9 37 37 H 1.08997 * 113.61333 * 25.43601 * 15 13 12 38 38 H 1.09007 * 113.61733 * 254.52946 * 15 13 12 39 39 H 0.97000 * 119.99307 * 72.49632 * 18 16 15 40 40 H 0.97000 * 120.00330 * 179.97438 * 22 21 19 41 41 H 1.08999 * 113.61850 * 139.97474 * 27 16 15 42 42 H 1.08997 * 113.61486 * 270.80246 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7877 -0.3698 2.4658 6 7 2.4334 -1.2702 3.3205 7 1 2.4175 -1.2422 4.2899 8 6 3.0786 -2.1794 2.5724 9 6 2.8484 -1.8636 1.2485 10 6 3.3626 -2.5902 0.0732 11 8 3.0860 -2.2073 -1.0473 12 7 4.1392 -3.6789 0.2408 13 6 4.6496 -4.4013 -0.9270 14 1 4.0416 -4.2496 -1.8189 15 6 6.1552 -4.1998 -1.1663 16 6 6.2177 -5.6932 -1.5278 17 1 6.0388 -5.8961 -2.5837 18 7 7.4087 -6.3726 -1.0119 19 6 8.4111 -6.7423 -1.8684 20 1 8.3235 -6.5334 -2.9244 21 6 9.5398 -7.3856 -1.3795 22 7 9.6463 -7.6406 -0.0927 23 14 10.9037 -7.8968 -2.5491 24 1 11.4442 -6.6953 -3.2345 25 1 11.9892 -8.5608 -1.7836 26 1 10.3618 -8.8410 -3.5590 27 6 4.9721 -5.8783 -0.6452 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.6691 -3.0060 2.9391 36 1 4.3595 -3.9846 1.1347 37 1 6.7106 -3.9454 -0.2636 38 1 6.3797 -3.5382 -2.0031 39 1 7.4872 -6.5605 -0.0635 40 1 10.4349 -8.0905 0.2489 41 1 4.2413 -6.5718 -1.0612 42 1 5.2040 -6.0843 0.3997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022352821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:24 Heat of formation + Delta-G solvation = 54.224385 kcal Electronic energy + Delta-G solvation = -22797.588223 eV Core-core repulsion = 19393.650449 eV Total energy + Delta-G solvation = -3403.937775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66732 -39.48088 -37.74198 -35.75031 -34.02712 -32.76507 -30.98956 -30.55357 -29.61665 -27.22823 -25.10594 -24.76289 -23.57427 -23.34635 -21.69487 -20.16139 -19.53327 -19.16768 -18.36657 -17.11584 -16.49629 -15.92227 -15.37636 -14.87296 -14.77935 -14.60419 -14.44384 -14.14552 -13.94686 -13.32338 -13.15546 -13.00798 -12.86544 -12.28627 -12.10942 -11.90759 -11.59719 -11.33471 -11.26366 -11.21867 -10.93708 -10.89836 -10.57331 -10.49326 -10.30318 -10.06167 -9.75757 -9.68301 -9.49872 -9.07534 -8.90331 -8.64925 -6.99224 -5.81175 -3.09741 1.29783 2.00842 2.44440 3.39387 3.42775 3.47308 3.47646 3.48471 4.22065 4.39748 4.57887 4.80938 4.94474 5.05251 5.09414 5.19265 5.25468 5.30706 5.41132 5.45423 5.48000 5.54756 5.73903 5.78143 5.87375 5.90686 5.97018 6.13927 6.14291 6.15538 6.25970 6.31972 6.37856 6.55337 6.63823 6.77810 6.84367 7.08473 7.31277 7.67901 7.72527 8.37483 8.41274 9.48888 10.05695 10.40230 11.41280 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030699 B = 0.002750 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.866804 B =10178.787176 C =10555.785035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 C -0.139 4.139 4 C 0.144 3.856 5 N -0.297 5.297 6 N -0.463 5.463 7 H 0.443 0.557 8 C 0.103 3.897 9 C -0.284 4.284 10 C 0.592 3.408 11 O -0.544 6.544 12 N -0.712 5.712 13 C 0.120 3.880 14 H 0.111 0.889 15 C -0.176 4.176 16 C 0.168 3.832 17 H 0.080 0.920 18 N -0.710 5.710 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.159 4.159 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.119 0.881 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.186 0.814 36 H 0.395 0.605 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.066 0.934 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.301 13.089 6.926 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.053 4.053 3 C -0.197 4.197 4 C -0.024 4.024 5 N -0.119 5.119 6 N -0.167 5.167 7 H 0.288 0.712 8 C -0.050 4.050 9 C -0.299 4.299 10 C 0.379 3.621 11 O -0.423 6.423 12 N -0.361 5.361 13 C 0.016 3.984 14 H 0.129 0.871 15 C -0.218 4.218 16 C 0.055 3.945 17 H 0.098 0.902 18 N -0.348 5.348 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.199 4.199 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.203 0.797 36 H 0.229 0.771 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.935 14.100 6.740 23.789 hybrid contribution 1.510 -1.178 0.511 1.982 sum -16.425 12.922 7.251 22.121 Atomic orbital electron populations 1.21778 0.93951 1.01957 1.01998 1.20010 0.95930 0.95760 0.93639 1.21782 1.01256 0.94717 1.01989 1.22427 0.93771 0.92830 0.93414 1.77115 1.20032 1.14229 1.00508 1.46118 1.39205 1.21829 1.09581 0.71233 1.23186 0.95768 0.94656 0.91358 1.20401 1.13070 1.03673 0.92782 1.17258 0.77539 0.79748 0.87544 1.90682 1.59536 1.67042 1.25045 1.45884 1.51464 1.28854 1.09919 1.22478 0.95233 0.91825 0.88887 0.87146 1.24328 0.93944 1.01725 1.01821 1.21362 0.86514 0.90262 0.96328 0.90207 1.42347 1.16622 1.67992 1.07871 1.19279 0.96380 1.30996 0.90837 0.91015 1.24757 0.98678 1.01428 0.96014 1.69640 1.29699 1.47313 1.11586 0.86255 0.81709 0.78333 0.79827 1.21188 1.21710 1.21186 1.23863 0.99861 0.94392 1.01783 0.92490 0.91937 0.92697 0.86272 0.92620 0.91927 0.92487 0.79685 0.77119 0.90301 0.92213 0.78139 0.93422 0.91514 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 2 C -0.03 -0.38 3.26 -91.77 -0.30 -0.68 16 3 C -0.14 -1.40 9.18 37.16 0.34 -1.06 16 4 C 0.14 1.75 5.77 -82.02 -0.47 1.28 16 5 N -0.30 -3.35 12.63 33.90 0.43 -2.92 16 6 N -0.46 -3.67 7.29 30.85 0.22 -3.44 16 7 H 0.44 1.88 8.96 -182.73 -1.64 0.24 16 8 C 0.10 0.84 11.52 -16.56 -0.19 0.65 16 9 C -0.28 -3.37 6.13 -105.06 -0.64 -4.01 16 10 C 0.59 8.29 7.81 -12.52 -0.10 8.19 16 11 O -0.54 -9.27 14.16 5.28 0.07 -9.20 16 12 N -0.71 -8.94 5.34 -54.09 -0.29 -9.23 16 13 C 0.12 1.76 4.24 -67.12 -0.28 1.48 16 14 H 0.11 1.70 7.47 -51.93 -0.39 1.31 16 15 C -0.18 -3.03 7.68 -25.92 -0.20 -3.22 16 16 C 0.17 3.21 4.48 -67.12 -0.30 2.90 16 17 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 18 N -0.71 -17.26 5.40 -52.64 -0.28 -17.54 16 19 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 23 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C -0.16 -2.42 7.58 -25.92 -0.20 -2.62 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.12 1.59 5.60 -51.93 -0.29 1.30 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.19 0.79 7.46 -52.48 -0.39 0.40 16 36 H 0.39 3.89 7.65 -40.82 -0.31 3.58 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.38 9.81 7.92 -40.82 -0.32 9.48 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -33.62 351.73 -8.63 -42.25 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.54 Total: 9.97 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.25 Total: -5.35 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.80 Total: -60.07 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.62 -8.63 -42.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022352821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.477 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds