Wall clock time and date at job start Tue Mar 31 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30837 * 125.89438 * 2 1 4 4 N 1.40088 * 108.20329 * 180.02562 * 3 2 1 5 5 H 0.96998 * 126.03651 * 180.02562 * 4 3 2 6 6 C 1.34943 * 107.92541 * 359.75616 * 4 3 2 7 7 C 1.50702 * 126.12848 * 180.24159 * 6 4 3 8 8 C 1.35320 * 107.74431 * 0.39207 * 6 4 3 9 9 C 1.50708 * 126.03726 * 179.87090 * 8 6 4 10 10 C 1.50695 * 109.46929 * 269.71226 * 9 8 6 11 11 O 1.21274 * 120.00495 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99682 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00137 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.90157 * 313.78356 * 13 12 10 15 15 C 1.53783 * 113.61643 * 85.03251 * 13 12 10 16 16 C 1.53783 * 87.17067 * 89.15993 * 15 13 12 17 17 H 1.09005 * 113.61082 * 139.94316 * 16 15 13 18 18 N 1.46502 * 113.61309 * 270.75605 * 16 15 13 19 19 C 1.36940 * 119.99708 * 202.48046 * 18 16 15 20 20 H 1.07995 * 120.00036 * 0.02562 * 19 18 16 21 21 C 1.38808 * 119.99545 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00379 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99653 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46890 * 60.00554 * 23 21 19 25 25 H 1.48500 * 109.46945 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47306 * 300.00090 * 23 21 19 27 27 C 1.53782 * 87.08016 * 25.39049 * 16 15 13 28 28 H 1.09001 * 109.46745 * 269.97368 * 1 2 3 29 29 H 1.08994 * 109.47032 * 29.97547 * 1 2 3 30 30 H 1.08998 * 109.47030 * 149.97533 * 1 2 3 31 31 H 1.08999 * 109.47086 * 270.17876 * 7 6 4 32 32 H 1.08994 * 109.47457 * 30.18151 * 7 6 4 33 33 H 1.09006 * 109.47135 * 150.18165 * 7 6 4 34 34 H 1.09005 * 109.46571 * 149.71659 * 9 8 6 35 35 H 1.08995 * 109.46709 * 29.71923 * 9 8 6 36 36 H 0.97005 * 120.00230 * 0.02562 * 12 10 9 37 37 H 1.09002 * 113.61553 * 334.56795 * 15 13 12 38 38 H 1.08999 * 113.61472 * 203.74755 * 15 13 12 39 39 H 0.96999 * 119.99867 * 22.48534 * 18 16 15 40 40 H 0.97006 * 120.00263 * 179.97438 * 22 21 19 41 41 H 1.09004 * 113.61145 * 89.11839 * 27 16 15 42 42 H 1.08999 * 113.60739 * 220.01348 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2081 -0.0004 6 6 3.6143 -0.7152 0.0045 7 6 4.8351 -1.5987 0.0110 8 6 2.3272 -1.1329 -0.0006 9 6 1.8600 -2.5658 -0.0004 10 6 1.7039 -3.0434 -1.4211 11 8 1.9484 -2.2944 -2.3430 12 7 1.2926 -4.3031 -1.6671 13 6 1.1414 -4.7677 -3.0483 14 1 0.6119 -4.0545 -3.6801 15 6 2.4479 -5.2895 -3.6693 16 6 2.0727 -6.6717 -3.1091 17 1 2.2942 -7.4935 -3.7901 18 7 2.5686 -6.9088 -1.7511 19 6 2.7296 -8.1899 -1.2950 20 1 2.4914 -9.0254 -1.9364 21 6 3.1999 -8.4145 -0.0085 22 7 3.4907 -7.3963 0.7732 23 14 3.4189 -10.1622 0.6140 24 1 4.3889 -10.8784 -0.2527 25 1 3.9293 -10.1307 2.0082 26 1 2.1120 -10.8665 0.5817 27 6 0.6076 -6.2073 -3.1597 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 5.1340 -1.8130 -1.0151 32 1 5.6490 -1.0902 0.5278 33 1 4.6054 -2.5322 0.5249 34 1 0.9013 -2.6352 0.5137 35 1 2.5936 -3.1869 0.5134 36 1 1.0967 -4.9021 -0.9297 37 1 3.3453 -4.8649 -3.2193 38 1 2.4605 -5.2486 -4.7584 39 1 2.7828 -6.1583 -1.1751 40 1 3.8190 -7.5533 1.6724 41 1 0.1157 -6.4170 -4.1095 42 1 0.0194 -6.5238 -2.2983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023079494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:42 Heat of formation + Delta-G solvation = 59.867976 kcal Electronic energy + Delta-G solvation = -23755.590682 eV Core-core repulsion = 20351.897632 eV Total energy + Delta-G solvation = -3403.693050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29539 -39.62048 -37.68015 -33.61602 -33.35889 -32.87918 -32.31150 -29.92424 -29.03577 -27.53785 -26.07706 -25.11450 -24.33101 -22.62754 -20.43949 -19.99807 -19.14181 -18.60244 -17.38025 -17.19892 -16.54321 -15.50069 -15.06382 -14.88988 -14.71177 -14.33613 -13.75980 -13.70447 -13.31642 -13.24252 -13.03246 -12.93858 -12.84067 -12.32999 -12.20555 -12.00135 -11.92930 -11.69573 -11.47031 -11.40167 -10.90343 -10.80882 -10.40445 -10.31138 -10.23642 -9.81972 -9.55266 -9.37559 -9.11704 -8.97654 -8.41465 -8.22287 -7.06299 -5.87444 -3.15754 1.96884 2.76749 2.93710 3.13393 3.38694 3.43931 3.44212 3.78515 4.51630 4.72888 4.74908 5.09749 5.10976 5.24339 5.25582 5.35408 5.42385 5.47542 5.54923 5.55827 5.59975 5.65574 5.84502 5.85244 5.89794 5.97896 6.02716 6.08362 6.18169 6.31560 6.35837 6.43194 6.66624 6.70069 6.77626 6.87118 7.18142 7.38058 7.64374 7.79750 8.06878 8.32783 8.75708 9.43992 10.00499 10.36321 11.35018 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.004296 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.620464 B = 6515.455082 C = 7357.389072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.093 3.907 3 N -0.304 5.304 4 N -0.479 5.479 5 H 0.435 0.565 6 C 0.105 3.895 7 C -0.097 4.097 8 C -0.211 4.211 9 C -0.065 4.065 10 C 0.516 3.484 11 O -0.544 6.544 12 N -0.705 5.705 13 C 0.130 3.870 14 H 0.077 0.923 15 C -0.167 4.167 16 C 0.165 3.835 17 H 0.062 0.938 18 N -0.705 5.705 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.010 4.010 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.180 4.180 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.409 0.591 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.080 0.920 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 11.429 -1.271 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 N -0.127 5.127 4 N -0.187 5.187 5 H 0.278 0.722 6 C -0.024 4.024 7 C -0.155 4.155 8 C -0.222 4.222 9 C -0.106 4.106 10 C 0.302 3.698 11 O -0.421 6.421 12 N -0.358 5.358 13 C 0.024 3.976 14 H 0.095 0.905 15 C -0.207 4.207 16 C 0.052 3.948 17 H 0.080 0.920 18 N -0.345 5.345 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.221 4.221 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.245 0.755 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.871 13.029 -1.865 13.471 hybrid contribution 0.614 -1.558 0.871 1.887 sum -2.257 11.471 -0.994 11.733 Atomic orbital electron populations 1.20168 0.87029 1.03360 1.02640 1.22105 0.96731 0.90216 0.98320 1.77195 0.86501 1.22322 1.26711 1.46017 1.07151 1.04770 1.60795 0.72171 1.20839 0.96994 0.84781 0.99747 1.20525 0.92571 0.98598 1.03848 1.19040 0.91285 0.94763 1.17139 1.19931 1.03736 0.92360 0.94545 1.20619 0.76369 0.81405 0.91381 1.90649 1.49914 1.55161 1.46351 1.45854 1.68225 1.13267 1.08472 1.21679 0.97622 0.95197 0.83056 0.90547 1.23820 0.98069 0.98971 0.99861 1.21173 0.91076 0.94052 0.88473 0.92017 1.42237 1.76635 1.05860 1.09793 1.19262 1.36884 0.84568 0.96735 0.91053 1.24715 1.01808 0.97309 0.96766 1.69623 1.50906 1.28946 1.08635 0.86256 0.77866 0.84208 0.77762 1.21284 1.21694 1.21235 1.24164 1.01545 0.94699 1.01690 0.90550 0.91030 0.90519 0.89864 0.91279 0.88947 0.88499 0.87724 0.75459 0.91442 0.90062 0.77931 0.93376 0.90105 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.12 36.01 0.36 -0.48 16 2 C 0.09 1.37 7.22 -82.41 -0.59 0.78 16 3 N -0.30 -4.63 12.70 33.67 0.43 -4.20 16 4 N -0.48 -6.25 7.36 33.48 0.25 -6.01 16 5 H 0.43 4.15 8.96 -182.61 -1.64 2.51 16 6 C 0.10 1.44 7.21 -82.26 -0.59 0.85 16 7 C -0.10 -1.11 10.22 36.01 0.37 -0.75 16 8 C -0.21 -3.14 4.59 -105.05 -0.48 -3.62 16 9 C -0.06 -0.91 5.64 -29.03 -0.16 -1.08 16 10 C 0.52 8.64 7.82 -10.99 -0.09 8.56 16 11 O -0.54 -10.81 15.97 5.56 0.09 -10.72 16 12 N -0.71 -11.60 4.34 -52.93 -0.23 -11.83 16 13 C 0.13 2.13 4.01 -67.03 -0.27 1.87 16 14 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 15 C -0.17 -2.89 7.61 -25.92 -0.20 -3.09 16 16 C 0.16 3.14 4.55 -67.12 -0.31 2.83 16 17 H 0.06 1.18 8.11 -51.93 -0.42 0.76 16 18 N -0.71 -16.40 5.03 -52.63 -0.26 -16.67 16 19 C -0.24 -6.35 9.97 -15.06 -0.15 -6.50 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -25.90 13.06 55.49 0.72 -25.17 16 23 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.18 -2.90 7.58 -25.83 -0.20 -3.10 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.10 7.14 -51.93 -0.37 0.73 16 34 H 0.10 1.16 7.92 -51.93 -0.41 0.75 16 35 H 0.10 1.46 7.14 -51.93 -0.37 1.08 16 36 H 0.41 6.83 7.84 -40.82 -0.32 6.51 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.39 9.28 6.38 -40.82 -0.26 9.02 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -32.13 352.11 -8.67 -40.80 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -7.55 Total: 16.32 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.40 Total: -4.08 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: 0.90 Total: -63.88 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.13 -8.67 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023079494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.668 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds