Wall clock time and date at job start Tue Mar 31 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30837 * 125.89438 * 2 1 4 4 N 1.40088 * 108.20329 * 180.02562 * 3 2 1 5 5 H 0.96998 * 126.03651 * 180.02562 * 4 3 2 6 6 C 1.34943 * 107.92541 * 359.75616 * 4 3 2 7 7 C 1.50702 * 126.12848 * 180.24159 * 6 4 3 8 8 C 1.35320 * 107.74431 * 0.39207 * 6 4 3 9 9 C 1.50708 * 126.03726 * 179.87090 * 8 6 4 10 10 C 1.50695 * 109.46929 * 269.71226 * 9 8 6 11 11 O 1.21274 * 120.00495 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99682 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00137 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.90157 * 313.78356 * 13 12 10 15 15 C 1.53783 * 113.61643 * 85.03251 * 13 12 10 16 16 C 1.53783 * 87.17067 * 89.15993 * 15 13 12 17 17 H 1.09005 * 113.61082 * 139.94316 * 16 15 13 18 18 N 1.46502 * 113.61309 * 270.75605 * 16 15 13 19 19 C 1.36940 * 119.99708 * 202.48046 * 18 16 15 20 20 H 1.07995 * 120.00036 * 0.02562 * 19 18 16 21 21 C 1.38808 * 119.99545 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00379 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99653 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46890 * 60.00554 * 23 21 19 25 25 H 1.48500 * 109.46945 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47306 * 300.00090 * 23 21 19 27 27 C 1.53782 * 87.08016 * 25.39049 * 16 15 13 28 28 H 1.09001 * 109.46745 * 269.97368 * 1 2 3 29 29 H 1.08994 * 109.47032 * 29.97547 * 1 2 3 30 30 H 1.08998 * 109.47030 * 149.97533 * 1 2 3 31 31 H 1.08999 * 109.47086 * 270.17876 * 7 6 4 32 32 H 1.08994 * 109.47457 * 30.18151 * 7 6 4 33 33 H 1.09006 * 109.47135 * 150.18165 * 7 6 4 34 34 H 1.09005 * 109.46571 * 149.71659 * 9 8 6 35 35 H 1.08995 * 109.46709 * 29.71923 * 9 8 6 36 36 H 0.97005 * 120.00230 * 0.02562 * 12 10 9 37 37 H 1.09002 * 113.61553 * 334.56795 * 15 13 12 38 38 H 1.08999 * 113.61472 * 203.74755 * 15 13 12 39 39 H 0.96999 * 119.99867 * 22.48534 * 18 16 15 40 40 H 0.97006 * 120.00263 * 179.97438 * 22 21 19 41 41 H 1.09004 * 113.61145 * 89.11839 * 27 16 15 42 42 H 1.08999 * 113.60739 * 220.01348 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2081 -0.0004 6 6 3.6143 -0.7152 0.0045 7 6 4.8351 -1.5987 0.0110 8 6 2.3272 -1.1329 -0.0006 9 6 1.8600 -2.5658 -0.0004 10 6 1.7039 -3.0434 -1.4211 11 8 1.9484 -2.2944 -2.3430 12 7 1.2926 -4.3031 -1.6671 13 6 1.1414 -4.7677 -3.0483 14 1 0.6119 -4.0545 -3.6801 15 6 2.4479 -5.2895 -3.6693 16 6 2.0727 -6.6717 -3.1091 17 1 2.2942 -7.4935 -3.7901 18 7 2.5686 -6.9088 -1.7511 19 6 2.7296 -8.1899 -1.2950 20 1 2.4914 -9.0254 -1.9364 21 6 3.1999 -8.4145 -0.0085 22 7 3.4907 -7.3963 0.7732 23 14 3.4189 -10.1622 0.6140 24 1 4.3889 -10.8784 -0.2527 25 1 3.9293 -10.1307 2.0082 26 1 2.1120 -10.8665 0.5817 27 6 0.6076 -6.2073 -3.1597 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 5.1340 -1.8130 -1.0151 32 1 5.6490 -1.0902 0.5278 33 1 4.6054 -2.5322 0.5249 34 1 0.9013 -2.6352 0.5137 35 1 2.5936 -3.1869 0.5134 36 1 1.0967 -4.9021 -0.9297 37 1 3.3453 -4.8649 -3.2193 38 1 2.4605 -5.2486 -4.7584 39 1 2.7828 -6.1583 -1.1751 40 1 3.8190 -7.5533 1.6724 41 1 0.1157 -6.4170 -4.1095 42 1 0.0194 -6.5238 -2.2983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023079494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:42 Heat of formation + Delta-G solvation = 38.270456 kcal Electronic energy + Delta-G solvation = -23756.527221 eV Core-core repulsion = 20351.897632 eV Total energy + Delta-G solvation = -3404.629589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.36566 -40.99502 -39.10417 -35.41331 -34.39135 -34.13478 -33.63695 -31.73059 -30.08759 -28.54698 -27.21017 -26.50089 -26.09437 -24.16709 -21.73136 -21.07445 -20.39365 -19.95645 -19.20016 -18.26088 -17.88998 -16.89882 -16.51589 -16.40562 -15.98416 -15.69119 -15.37223 -14.89511 -14.71297 -14.39185 -14.33801 -14.14456 -13.89537 -13.44930 -13.26420 -13.23417 -13.13506 -13.05950 -12.82762 -12.71431 -12.58444 -12.48480 -12.15218 -11.81531 -11.65786 -11.48580 -11.02929 -10.84039 -10.75189 -10.16586 -9.80025 -9.32246 -8.93882 -7.88931 -5.16160 0.89795 1.54022 1.54533 1.60414 1.65761 1.81490 1.97634 2.50966 2.62111 3.43378 3.71551 3.72647 3.74885 3.89410 4.00973 4.08287 4.19989 4.28895 4.34452 4.42535 4.49258 4.58611 4.63330 4.79116 4.81212 4.90266 4.96502 5.00087 5.04491 5.05398 5.10693 5.14894 5.27676 5.29856 5.44594 5.59016 5.73719 5.83528 6.34695 6.44201 6.72920 6.74845 7.41623 7.42938 8.16057 8.42179 9.33453 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.004296 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.620464 B = 6515.455082 C = 7357.389072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.081 3.919 3 N -0.329 5.329 4 N -0.473 5.473 5 H 0.448 0.552 6 C 0.102 3.898 7 C -0.094 4.094 8 C -0.236 4.236 9 C -0.057 4.057 10 C 0.517 3.483 11 O -0.576 6.576 12 N -0.704 5.704 13 C 0.130 3.870 14 H 0.085 0.915 15 C -0.158 4.158 16 C 0.147 3.853 17 H 0.062 0.938 18 N -0.716 5.716 19 C -0.246 4.246 20 H 0.074 0.926 21 C -0.063 4.063 22 N -0.960 5.960 23 Si 0.966 3.034 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.280 1.280 27 C -0.157 4.157 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.408 0.592 37 H 0.040 0.960 38 H 0.107 0.893 39 H 0.379 0.621 40 H 0.251 0.749 41 H 0.113 0.887 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.765 11.151 -1.685 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 N -0.153 5.153 4 N -0.182 5.182 5 H 0.294 0.706 6 C -0.028 4.028 7 C -0.152 4.152 8 C -0.247 4.247 9 C -0.098 4.098 10 C 0.305 3.695 11 O -0.456 6.456 12 N -0.355 5.355 13 C 0.024 3.976 14 H 0.103 0.897 15 C -0.198 4.198 16 C 0.036 3.964 17 H 0.080 0.920 18 N -0.356 5.356 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.257 4.257 22 N -0.610 5.610 23 Si 0.796 3.204 24 H -0.211 1.211 25 H -0.224 1.224 26 H -0.206 1.206 27 C -0.198 4.198 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.137 0.863 35 H 0.122 0.878 36 H 0.244 0.756 37 H 0.059 0.941 38 H 0.126 0.874 39 H 0.213 0.787 40 H 0.060 0.940 41 H 0.132 0.868 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.552 12.751 -2.317 13.438 hybrid contribution 0.847 -1.456 0.908 1.914 sum -2.705 11.294 -1.410 11.699 Atomic orbital electron populations 1.20265 0.85228 1.03562 1.04046 1.22606 0.98143 0.90007 0.97774 1.77136 0.87389 1.22997 1.27784 1.46052 1.07201 1.04823 1.60136 0.70600 1.21191 0.97531 0.85258 0.98799 1.20548 0.92692 0.98293 1.03666 1.19275 0.91989 0.95074 1.18389 1.19901 1.04880 0.92074 0.92919 1.21027 0.75364 0.81012 0.92079 1.90627 1.51465 1.55965 1.47553 1.45892 1.67865 1.13198 1.08574 1.21736 0.97089 0.95632 0.83107 0.89747 1.23793 0.97334 0.97427 1.01280 1.21439 0.93246 0.95022 0.86651 0.91983 1.42328 1.77260 1.04727 1.11292 1.19587 1.35570 0.85820 0.96754 0.90809 1.25374 1.02659 1.00357 0.97267 1.69749 1.52270 1.30366 1.08586 0.85335 0.77784 0.80627 0.76673 1.21125 1.22355 1.20581 1.23994 0.99207 0.93605 1.03011 0.88488 0.90605 0.90465 0.90590 0.88386 0.89544 0.86327 0.87752 0.75580 0.94066 0.87440 0.78726 0.93966 0.86841 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.12 71.24 0.72 -0.87 16 2 C 0.08 2.34 7.22 43.10 0.31 2.65 16 3 N -0.33 -9.86 12.70 -47.39 -0.60 -10.46 16 4 N -0.47 -12.02 7.36 -48.00 -0.35 -12.37 16 5 H 0.45 8.16 8.96 -213.33 -1.91 6.25 16 6 C 0.10 2.75 7.21 41.41 0.30 3.05 16 7 C -0.09 -2.10 10.22 71.24 0.73 -1.37 16 8 C -0.24 -6.92 4.59 -20.14 -0.09 -7.01 16 9 C -0.06 -1.59 5.64 29.10 0.16 -1.42 16 10 C 0.52 17.15 7.82 87.66 0.69 17.84 16 11 O -0.58 -22.80 15.97 -3.01 -0.05 -22.85 16 12 N -0.70 -22.69 4.34 -439.77 -1.91 -24.60 16 13 C 0.13 4.06 4.01 45.58 0.18 4.24 16 14 H 0.08 2.56 8.05 -2.39 -0.02 2.54 16 15 C -0.16 -5.27 7.61 31.12 0.24 -5.04 16 16 C 0.15 5.40 4.55 45.52 0.21 5.61 16 17 H 0.06 2.27 8.11 -2.38 -0.02 2.25 16 18 N -0.72 -33.07 5.03 -320.44 -1.61 -34.69 16 19 C -0.25 -12.69 9.97 84.03 0.84 -11.85 16 20 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 21 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 22 N -0.96 -53.57 13.06 21.65 0.28 -53.29 16 23 Si 0.97 43.54 29.55 68.60 2.03 45.57 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 27 C -0.16 -4.72 7.58 31.18 0.24 -4.48 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.66 7.92 -2.39 -0.02 1.64 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 2.05 7.14 -2.38 -0.02 2.03 16 34 H 0.12 2.71 7.92 -2.38 -0.02 2.69 16 35 H 0.10 2.91 7.14 -2.39 -0.02 2.89 16 36 H 0.41 13.47 7.84 -92.70 -0.73 12.74 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.38 18.34 6.38 -92.71 -0.59 17.75 16 40 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 41 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 42 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 Total: -1.00 -67.85 352.11 0.60 -67.26 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: -2.17 Total: 46.99 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.98 Total: -1.56 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -4.19 Total: -135.40 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.85 0.60 -67.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023079494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.526 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds