Wall clock time and date at job start Tue Mar 31 2020 02:51:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30848 * 125.42478 * 2 1
4 4 C 1.33315 * 109.68898 * 179.74174 * 3 2 1
5 5 C 1.36665 * 107.78570 * 0.38043 * 4 3 2
6 6 C 1.46762 * 126.84538 * 179.89591 * 5 4 3
7 7 O 1.21681 * 119.99954 * 359.68649 * 6 5 4
8 8 N 1.34781 * 119.99853 * 179.68291 * 6 5 4
9 9 C 1.46507 * 119.99916 * 180.02562 * 8 6 5
10 10 C 1.52991 * 109.46903 * 180.02562 * 9 8 6
11 11 H 1.08999 * 109.70730 * 60.12402 * 10 9 8
12 12 C 1.53625 * 109.66378 * 180.72188 * 10 9 8
13 13 C 1.53037 * 109.24430 * 174.54835 * 12 10 9
14 14 C 1.53040 * 109.54059 * 298.50811 * 13 12 10
15 15 C 1.53200 * 109.31165 * 61.36381 * 14 13 12
16 16 N 1.46927 * 108.77398 * 305.36959 * 15 14 13
17 17 C 1.36936 * 120.63013 * 233.58734 * 16 15 14
18 18 H 1.07998 * 120.00407 * 148.85005 * 17 16 15
19 19 C 1.38817 * 119.99864 * 329.12665 * 17 16 15
20 20 N 1.31621 * 119.99945 * 162.68204 * 19 17 16
21 21 Si 1.86803 * 119.99873 * 342.67878 * 19 17 16
22 22 H 1.48499 * 109.46817 * 88.94258 * 21 19 17
23 23 H 1.48490 * 109.47037 * 208.94283 * 21 19 17
24 24 H 1.48501 * 109.46887 * 328.94468 * 21 19 17
25 25 N 1.34501 * 125.41361 * 179.97438 * 2 1 3
26 26 H 0.96999 * 126.47341 * 0.04803 * 25 2 1
27 27 H 1.08999 * 109.46960 * 270.02964 * 1 2 3
28 28 H 1.09004 * 109.47004 * 30.02228 * 1 2 3
29 29 H 1.08994 * 109.47749 * 150.02066 * 1 2 3
30 30 H 1.08006 * 126.11172 * 180.27100 * 4 3 2
31 31 H 0.96997 * 119.99690 * 359.97438 * 8 6 5
32 32 H 1.08998 * 109.46753 * 59.99840 * 9 8 6
33 33 H 1.09000 * 109.46669 * 300.00023 * 9 8 6
34 34 H 1.08994 * 109.63482 * 54.55388 * 12 10 9
35 35 H 1.09002 * 109.45663 * 294.42902 * 12 10 9
36 36 H 1.08994 * 109.46485 * 178.48380 * 13 12 10
37 37 H 1.09004 * 109.44785 * 58.51939 * 13 12 10
38 38 H 1.08999 * 109.49455 * 301.41682 * 14 13 12
39 39 H 1.08996 * 109.52652 * 181.32752 * 14 13 12
40 40 H 1.08999 * 109.58610 * 185.58121 * 15 14 13
41 41 H 1.08997 * 109.69975 * 65.22196 * 15 14 13
42 42 H 0.97000 * 119.99364 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2654 1.0662 0.0000
4 6 3.5486 0.7047 0.0057
5 6 3.5975 -0.6611 0.0008
6 6 4.8027 -1.4985 0.0021
7 8 5.9037 -0.9803 0.0022
8 7 4.6900 -2.8416 0.0031
9 6 5.8931 -3.6777 0.0050
10 6 5.4887 -5.1532 0.0052
11 1 4.8997 -5.3730 -0.8851
12 6 6.7472 -6.0341 0.0254
13 6 6.3338 -7.5011 0.1628
14 6 5.5856 -7.7006 1.4828
15 6 4.3186 -6.8393 1.4823
16 7 4.6942 -5.4460 1.2060
17 6 4.3064 -4.4387 2.0487
18 1 4.9313 -3.5664 2.1712
19 6 3.1127 -4.5413 2.7498
20 7 2.8945 -3.7704 3.7941
21 14 1.8160 -5.7733 2.2111
22 1 2.0607 -7.0749 2.8827
23 1 0.4697 -5.2696 2.5833
24 1 1.8871 -5.9549 0.7389
25 7 2.2864 -1.0962 0.0005
26 1 1.9848 -2.0181 0.0002
27 1 -0.3633 0.0005 1.0277
28 1 -0.3633 0.8898 -0.5142
29 1 -0.3634 -0.8901 -0.5135
30 1 4.3979 1.3719 0.0112
31 1 3.8124 -3.2546 0.0034
32 1 6.4838 -3.4622 0.8953
33 1 6.4855 -3.4638 -0.8846
34 1 7.3774 -5.7531 0.8691
35 1 7.3008 -5.8976 -0.9036
36 1 7.2228 -8.1316 0.1504
37 1 5.6833 -7.7743 -0.6682
38 1 6.2268 -7.4040 2.3128
39 1 5.3119 -8.7501 1.5914
40 1 3.8345 -6.9009 2.4569
41 1 3.6342 -7.1930 0.7112
42 1 2.0602 -3.8420 4.2838
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001024361966.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:51:25
Heat of formation + Delta-G solvation = 38.039771 kcal
Electronic energy + Delta-G solvation = -24466.064126 eV
Core-core repulsion = 21061.424534 eV
Total energy + Delta-G solvation = -3404.639592 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.90462 -39.10818 -37.89173 -34.42031 -33.16646 -32.49029 -31.76381 -30.91675
-30.71080 -27.46000 -26.11684 -24.74328 -22.78213 -22.35436 -21.00500 -20.38254
-19.99501 -19.49261 -18.19299 -16.66340 -15.90291 -15.52528 -15.41708 -15.30565
-14.95856 -13.90699 -13.84165 -13.80398 -13.69390 -13.53467 -13.33063 -13.08812
-12.63356 -12.59567 -12.40091 -12.24048 -12.03185 -11.74957 -11.40860 -10.95429
-10.75741 -10.55143 -10.29930 -10.14397 -10.07382 -9.90222 -9.74858 -9.61446
-9.44582 -8.83737 -8.48793 -8.10211 -7.07085 -6.10232 -3.52621 1.66723
3.07723 3.12897 3.16333 3.26902 3.30443 3.66633 3.88172 4.32570
4.52361 4.69545 5.06762 5.10454 5.23243 5.30135 5.34567 5.42107
5.48658 5.50603 5.66363 5.71630 5.80852 5.86365 5.90687 6.02241
6.09696 6.12780 6.14470 6.30064 6.33727 6.39272 6.48757 6.60148
6.66028 6.81637 6.88483 6.99716 7.44223 7.80913 8.00662 8.20036
8.22285 8.69298 8.77126 9.53508 9.93168 11.03691
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.015898 B = 0.006195 C = 0.004914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1760.817531 B = 4518.844604 C = 5696.339426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.228 3.772
3 N -0.499 5.499
4 C 0.056 3.944
5 C -0.069 4.069
6 C 0.591 3.409
7 O -0.547 6.547
8 N -0.692 5.692
9 C 0.136 3.864
10 C 0.163 3.837
11 H 0.037 0.963
12 C -0.128 4.128
13 C -0.108 4.108
14 C -0.136 4.136
15 C 0.125 3.875
16 N -0.604 5.604
17 C -0.266 4.266
18 H 0.094 0.906
19 C 0.027 3.973
20 N -0.899 5.899
21 Si 0.876 3.124
22 H -0.285 1.285
23 H -0.305 1.305
24 H -0.272 1.272
25 N -0.542 5.542
26 H 0.423 0.577
27 H 0.085 0.915
28 H 0.091 0.909
29 H 0.074 0.926
30 H 0.181 0.819
31 H 0.404 0.596
32 H 0.073 0.927
33 H 0.061 0.939
34 H 0.066 0.934
35 H 0.057 0.943
36 H 0.051 0.949
37 H 0.053 0.947
38 H 0.064 0.936
39 H 0.051 0.949
40 H 0.072 0.928
41 H 0.023 0.977
42 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.610 -1.873 -9.433 9.751
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.036 4.036
3 N -0.220 5.220
4 C -0.097 4.097
5 C -0.186 4.186
6 C 0.377 3.623
7 O -0.426 6.426
8 N -0.341 5.341
9 C 0.012 3.988
10 C 0.056 3.944
11 H 0.054 0.946
12 C -0.168 4.168
13 C -0.146 4.146
14 C -0.175 4.175
15 C 0.000 4.000
16 N -0.330 5.330
17 C -0.394 4.394
18 H 0.111 0.889
19 C -0.173 4.173
20 N -0.541 5.541
21 Si 0.707 3.293
22 H -0.213 1.213
23 H -0.233 1.233
24 H -0.198 1.198
25 N -0.147 5.147
26 H 0.262 0.738
27 H 0.103 0.897
28 H 0.110 0.890
29 H 0.093 0.907
30 H 0.198 0.802
31 H 0.240 0.760
32 H 0.091 0.909
33 H 0.079 0.921
34 H 0.085 0.915
35 H 0.075 0.925
36 H 0.070 0.930
37 H 0.072 0.928
38 H 0.083 0.917
39 H 0.070 0.930
40 H 0.090 0.910
41 H 0.041 0.959
42 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -1.191 -0.652 -9.297 9.395
hybrid contribution -1.085 -2.408 0.111 2.643
sum -2.276 -3.060 -9.186 9.946
Atomic orbital electron populations
1.20256 0.84705 1.04008 1.04043 1.23308 0.95714 0.81752 1.02836
1.70109 1.02177 1.28283 1.21443 1.22517 0.94549 0.91310 1.01345
1.21252 0.83871 0.95919 1.17532 1.16795 0.86704 0.81859 0.76961
1.90783 1.25894 1.73628 1.52317 1.45812 1.10826 1.04856 1.72639
1.21298 0.86946 0.89117 1.01424 1.20853 0.91882 0.91713 0.89949
0.94576 1.22002 0.98070 0.95456 1.01245 1.21366 0.99226 0.96183
0.97815 1.21999 0.99092 0.98746 0.97645 1.21386 0.94407 0.84806
0.99448 1.44425 1.62400 1.02144 1.24010 1.19036 1.02110 1.00055
1.18204 0.88890 1.25375 0.97436 0.97070 0.97391 1.69826 1.25737
1.40838 1.17725 0.87096 0.81640 0.81355 0.79255 1.21284 1.23280
1.19758 1.43238 1.06220 1.10334 1.54889 0.73794 0.89657 0.89007
0.90664 0.80236 0.75955 0.90891 0.92057 0.91493 0.92481 0.92976
0.92786 0.91749 0.93042 0.90980 0.95891 0.92675
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.74 10.51 36.00 0.38 -0.37 16
2 C 0.23 3.44 8.12 -155.62 -1.26 2.17 16
3 N -0.50 -8.59 11.20 -10.58 -0.12 -8.71 16
4 C 0.06 1.00 11.66 -17.48 -0.20 0.79 16
5 C -0.07 -1.25 7.08 -82.14 -0.58 -1.83 16
6 C 0.59 11.64 7.79 -12.81 -0.10 11.54 16
7 O -0.55 -12.05 16.90 5.21 0.09 -11.96 16
8 N -0.69 -12.83 3.85 -61.59 -0.24 -13.07 16
9 C 0.14 2.42 4.44 -4.04 -0.02 2.41 16
10 C 0.16 2.81 3.03 -67.38 -0.20 2.60 16
11 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
12 C -0.13 -1.91 5.40 -26.39 -0.14 -2.05 16
13 C -0.11 -1.53 5.88 -26.69 -0.16 -1.69 16
14 C -0.14 -2.21 6.08 -26.61 -0.16 -2.38 16
15 C 0.12 2.46 4.19 -3.71 -0.02 2.44 16
16 N -0.60 -12.50 2.71 -164.52 -0.45 -12.95 16
17 C -0.27 -6.48 7.42 -15.06 -0.11 -6.59 16
18 H 0.09 2.54 6.07 -52.49 -0.32 2.23 16
19 C 0.03 0.70 5.27 -17.43 -0.09 0.61 16
20 N -0.90 -25.44 13.97 55.49 0.78 -24.67 16
21 Si 0.88 19.92 24.32 -169.99 -4.13 15.78 16
22 H -0.29 -6.52 6.51 56.52 0.37 -6.15 16
23 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16
24 H -0.27 -5.91 6.75 56.52 0.38 -5.52 16
25 N -0.54 -8.56 6.07 -7.02 -0.04 -8.60 16
26 H 0.42 6.02 8.32 -40.82 -0.34 5.68 16
27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16
28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
30 H 0.18 2.90 8.06 -52.48 -0.42 2.48 16
31 H 0.40 7.43 6.63 -40.82 -0.27 7.16 16
32 H 0.07 1.48 7.42 -51.93 -0.39 1.09 16
33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16
35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
40 H 0.07 1.59 4.64 -51.93 -0.24 1.35 16
41 H 0.02 0.45 7.05 -51.93 -0.37 0.08 16
42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16
LS Contribution 332.30 15.07 5.01 5.01
Total: -1.00 -30.76 332.30 -7.96 -38.72
By element:
Atomic # 1 Polarization: 18.96 SS G_CDS: -6.18 Total: 12.78 kcal
Atomic # 6 Polarization: 10.34 SS G_CDS: -2.67 Total: 7.67 kcal
Atomic # 7 Polarization: -67.93 SS G_CDS: -0.07 Total: -68.00 kcal
Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal
Atomic # 14 Polarization: 19.92 SS G_CDS: -4.13 Total: 15.78 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -30.76 -7.96 -38.72 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001024361966.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.763 kcal
(2) G-P(sol) polarization free energy of solvation -30.762 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.002 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.040 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds