Wall clock time and date at job start Tue Mar 31 2020 02:51:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30848 * 125.42478 * 2 1
4 4 C 1.33315 * 109.68898 * 179.74174 * 3 2 1
5 5 C 1.36665 * 107.78570 * 0.38043 * 4 3 2
6 6 C 1.46762 * 126.84538 * 179.89591 * 5 4 3
7 7 O 1.21681 * 119.99954 * 359.68649 * 6 5 4
8 8 N 1.34781 * 119.99853 * 179.68291 * 6 5 4
9 9 C 1.46507 * 119.99916 * 180.02562 * 8 6 5
10 10 C 1.52991 * 109.46903 * 180.02562 * 9 8 6
11 11 H 1.08999 * 109.70730 * 60.12402 * 10 9 8
12 12 C 1.53625 * 109.66378 * 180.72188 * 10 9 8
13 13 C 1.53037 * 109.24430 * 174.54835 * 12 10 9
14 14 C 1.53040 * 109.54059 * 298.50811 * 13 12 10
15 15 C 1.53200 * 109.31165 * 61.36381 * 14 13 12
16 16 N 1.46927 * 108.77398 * 305.36959 * 15 14 13
17 17 C 1.36936 * 120.63013 * 233.58734 * 16 15 14
18 18 H 1.07998 * 120.00407 * 148.85005 * 17 16 15
19 19 C 1.38817 * 119.99864 * 329.12665 * 17 16 15
20 20 N 1.31621 * 119.99945 * 162.68204 * 19 17 16
21 21 Si 1.86803 * 119.99873 * 342.67878 * 19 17 16
22 22 H 1.48499 * 109.46817 * 88.94258 * 21 19 17
23 23 H 1.48490 * 109.47037 * 208.94283 * 21 19 17
24 24 H 1.48501 * 109.46887 * 328.94468 * 21 19 17
25 25 N 1.34501 * 125.41361 * 179.97438 * 2 1 3
26 26 H 0.96999 * 126.47341 * 0.04803 * 25 2 1
27 27 H 1.08999 * 109.46960 * 270.02964 * 1 2 3
28 28 H 1.09004 * 109.47004 * 30.02228 * 1 2 3
29 29 H 1.08994 * 109.47749 * 150.02066 * 1 2 3
30 30 H 1.08006 * 126.11172 * 180.27100 * 4 3 2
31 31 H 0.96997 * 119.99690 * 359.97438 * 8 6 5
32 32 H 1.08998 * 109.46753 * 59.99840 * 9 8 6
33 33 H 1.09000 * 109.46669 * 300.00023 * 9 8 6
34 34 H 1.08994 * 109.63482 * 54.55388 * 12 10 9
35 35 H 1.09002 * 109.45663 * 294.42902 * 12 10 9
36 36 H 1.08994 * 109.46485 * 178.48380 * 13 12 10
37 37 H 1.09004 * 109.44785 * 58.51939 * 13 12 10
38 38 H 1.08999 * 109.49455 * 301.41682 * 14 13 12
39 39 H 1.08996 * 109.52652 * 181.32752 * 14 13 12
40 40 H 1.08999 * 109.58610 * 185.58121 * 15 14 13
41 41 H 1.08997 * 109.69975 * 65.22196 * 15 14 13
42 42 H 0.97000 * 119.99364 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2654 1.0662 0.0000
4 6 3.5486 0.7047 0.0057
5 6 3.5975 -0.6611 0.0008
6 6 4.8027 -1.4985 0.0021
7 8 5.9037 -0.9803 0.0022
8 7 4.6900 -2.8416 0.0031
9 6 5.8931 -3.6777 0.0050
10 6 5.4887 -5.1532 0.0052
11 1 4.8997 -5.3730 -0.8851
12 6 6.7472 -6.0341 0.0254
13 6 6.3338 -7.5011 0.1628
14 6 5.5856 -7.7006 1.4828
15 6 4.3186 -6.8393 1.4823
16 7 4.6942 -5.4460 1.2060
17 6 4.3064 -4.4387 2.0487
18 1 4.9313 -3.5664 2.1712
19 6 3.1127 -4.5413 2.7498
20 7 2.8945 -3.7704 3.7941
21 14 1.8160 -5.7733 2.2111
22 1 2.0607 -7.0749 2.8827
23 1 0.4697 -5.2696 2.5833
24 1 1.8871 -5.9549 0.7389
25 7 2.2864 -1.0962 0.0005
26 1 1.9848 -2.0181 0.0002
27 1 -0.3633 0.0005 1.0277
28 1 -0.3633 0.8898 -0.5142
29 1 -0.3634 -0.8901 -0.5135
30 1 4.3979 1.3719 0.0112
31 1 3.8124 -3.2546 0.0034
32 1 6.4838 -3.4622 0.8953
33 1 6.4855 -3.4638 -0.8846
34 1 7.3774 -5.7531 0.8691
35 1 7.3008 -5.8976 -0.9036
36 1 7.2228 -8.1316 0.1504
37 1 5.6833 -7.7743 -0.6682
38 1 6.2268 -7.4040 2.3128
39 1 5.3119 -8.7501 1.5914
40 1 3.8345 -6.9009 2.4569
41 1 3.6342 -7.1930 0.7112
42 1 2.0602 -3.8420 4.2838
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001024361966.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:51:25
Heat of formation + Delta-G solvation = 16.629098 kcal
Electronic energy + Delta-G solvation = -24466.992562 eV
Core-core repulsion = 21061.424534 eV
Total energy + Delta-G solvation = -3405.568029 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-43.21050 -40.63128 -39.39562 -35.91432 -34.89754 -33.81588 -32.94861 -32.59501
-32.10007 -28.70384 -27.60203 -26.32909 -24.32451 -23.74747 -22.38278 -21.74010
-21.40052 -20.90639 -19.64288 -18.37484 -17.49890 -16.97441 -16.90052 -16.75567
-16.44836 -15.37552 -15.31491 -15.19397 -15.08361 -14.90315 -14.80625 -14.32860
-14.25157 -13.77289 -13.68816 -13.42033 -13.24677 -13.23299 -12.95380 -12.55327
-12.31366 -11.97987 -11.72101 -11.58645 -11.55796 -11.30148 -11.22952 -11.21176
-10.95835 -10.65001 -10.06323 -9.46177 -8.81416 -8.09419 -5.47893 0.28683
1.32769 1.40126 1.50603 1.75824 1.89353 2.20881 2.40299 2.43665
3.05654 3.29365 3.40912 3.84943 3.87637 4.06183 4.09631 4.16863
4.30271 4.32441 4.40807 4.49616 4.58903 4.62875 4.71522 4.73863
4.85867 4.86767 4.92417 5.05189 5.06382 5.15476 5.23765 5.29188
5.30224 5.45814 5.51260 5.61761 5.92928 6.23903 6.24358 6.51986
6.86988 6.93546 7.15621 7.65145 8.06771 9.08535
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.015898 B = 0.006195 C = 0.004914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1760.817531 B = 4518.844604 C = 5696.339426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.239 3.761
3 N -0.522 5.522
4 C 0.052 3.948
5 C -0.096 4.096
6 C 0.588 3.412
7 O -0.579 6.579
8 N -0.687 5.687
9 C 0.137 3.863
10 C 0.162 3.838
11 H 0.058 0.942
12 C -0.124 4.124
13 C -0.103 4.103
14 C -0.132 4.132
15 C 0.118 3.882
16 N -0.615 5.615
17 C -0.234 4.234
18 H 0.054 0.946
19 C -0.025 4.025
20 N -0.954 5.954
21 Si 0.939 3.061
22 H -0.288 1.288
23 H -0.315 1.315
24 H -0.249 1.249
25 N -0.540 5.540
26 H 0.430 0.570
27 H 0.092 0.908
28 H 0.108 0.892
29 H 0.101 0.899
30 H 0.186 0.814
31 H 0.405 0.595
32 H 0.040 0.960
33 H 0.083 0.917
34 H 0.049 0.951
35 H 0.088 0.912
36 H 0.077 0.923
37 H 0.069 0.931
38 H 0.046 0.954
39 H 0.075 0.925
40 H 0.044 0.956
41 H 0.037 0.963
42 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.421 -3.936 -11.782 12.656
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.025 4.025
3 N -0.243 5.243
4 C -0.102 4.102
5 C -0.212 4.212
6 C 0.375 3.625
7 O -0.461 6.461
8 N -0.336 5.336
9 C 0.014 3.986
10 C 0.057 3.943
11 H 0.075 0.925
12 C -0.164 4.164
13 C -0.140 4.140
14 C -0.171 4.171
15 C -0.006 4.006
16 N -0.341 5.341
17 C -0.364 4.364
18 H 0.072 0.928
19 C -0.221 4.221
20 N -0.600 5.600
21 Si 0.768 3.232
22 H -0.215 1.215
23 H -0.245 1.245
24 H -0.173 1.173
25 N -0.145 5.145
26 H 0.270 0.730
27 H 0.111 0.889
28 H 0.127 0.873
29 H 0.120 0.880
30 H 0.203 0.797
31 H 0.242 0.758
32 H 0.058 0.942
33 H 0.101 0.899
34 H 0.068 0.932
35 H 0.107 0.893
36 H 0.096 0.904
37 H 0.088 0.912
38 H 0.065 0.935
39 H 0.093 0.907
40 H 0.062 0.938
41 H 0.055 0.945
42 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -1.984 -2.775 -11.696 12.183
hybrid contribution -0.772 -1.730 0.849 2.076
sum -2.757 -4.505 -10.847 12.065
Atomic orbital electron populations
1.20526 0.81138 1.06213 1.05133 1.24282 0.97498 0.80892 0.99793
1.70153 1.02006 1.29275 1.22832 1.22752 0.95306 0.91445 1.00693
1.21071 0.84421 0.95955 1.19763 1.17025 0.86874 0.82218 0.76364
1.90746 1.27171 1.74171 1.53990 1.45785 1.11082 1.04668 1.72053
1.21345 0.86642 0.89777 1.00863 1.21074 0.92796 0.91480 0.88982
0.92474 1.21979 0.96607 0.95565 1.02213 1.21363 1.00266 0.95702
0.96697 1.21938 0.97259 0.99265 0.98609 1.21451 0.96285 0.84618
0.98277 1.44527 1.62750 1.01988 1.24858 1.18756 1.00799 0.99451
1.17397 0.92821 1.25880 0.99470 0.99233 0.97483 1.69988 1.26146
1.44059 1.19824 0.86073 0.78333 0.78809 0.79946 1.21525 1.24463
1.17272 1.43232 1.05442 1.10968 1.54848 0.73022 0.88918 0.87306
0.87996 0.79694 0.75838 0.94167 0.89857 0.93198 0.89345 0.90421
0.91244 0.93516 0.90664 0.93810 0.94518 0.93325
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.31 10.51 71.23 0.75 -0.56 16
2 C 0.24 6.95 8.12 138.20 1.12 8.07 16
3 N -0.52 -17.75 11.20 -187.40 -2.10 -19.85 16
4 C 0.05 1.87 11.66 84.10 0.98 2.85 16
5 C -0.10 -3.53 7.08 40.01 0.28 -3.25 16
6 C 0.59 23.84 7.79 86.47 0.67 24.51 16
7 O -0.58 -26.43 16.90 -4.29 -0.07 -26.50 16
8 N -0.69 -25.73 3.85 -467.00 -1.80 -27.53 16
9 C 0.14 4.86 4.44 86.38 0.38 5.25 16
10 C 0.16 5.25 3.03 45.12 0.14 5.39 16
11 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
12 C -0.12 -3.31 5.40 30.82 0.17 -3.15 16
13 C -0.10 -2.47 5.88 30.62 0.18 -2.29 16
14 C -0.13 -3.92 6.08 30.67 0.19 -3.73 16
15 C 0.12 4.40 4.19 86.37 0.36 4.76 16
16 N -0.62 -24.77 2.71 -674.41 -1.83 -26.60 16
17 C -0.23 -11.62 7.42 84.03 0.62 -10.99 16
18 H 0.05 3.08 6.07 -2.91 -0.02 3.07 16
19 C -0.03 -1.33 5.27 84.86 0.45 -0.88 16
20 N -0.95 -55.97 13.97 21.65 0.30 -55.66 16
21 Si 0.94 41.12 24.32 68.60 1.67 42.79 16
22 H -0.29 -12.62 6.51 99.48 0.65 -11.97 16
23 H -0.32 -14.28 7.11 99.48 0.71 -13.58 16
24 H -0.25 -9.80 6.75 99.48 0.67 -9.13 16
25 N -0.54 -16.82 6.07 -176.12 -1.07 -17.89 16
26 H 0.43 11.91 8.32 -92.71 -0.77 11.14 16
27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
28 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16
29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16
30 H 0.19 6.20 8.06 -2.91 -0.02 6.17 16
31 H 0.41 14.81 6.63 -92.71 -0.61 14.19 16
32 H 0.04 1.69 7.42 -2.39 -0.02 1.67 16
33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16
34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16
36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16
38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16
39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
40 H 0.04 1.88 4.64 -2.39 -0.01 1.87 16
41 H 0.04 1.29 7.05 -2.39 -0.02 1.27 16
42 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16
Total: -1.00 -69.16 332.30 0.97 -68.19
By element:
Atomic # 1 Polarization: 37.50 SS G_CDS: -0.43 Total: 37.06 kcal
Atomic # 6 Polarization: 19.69 SS G_CDS: 6.29 Total: 25.98 kcal
Atomic # 7 Polarization: -141.04 SS G_CDS: -6.49 Total: -147.53 kcal
Atomic # 8 Polarization: -26.43 SS G_CDS: -0.07 Total: -26.50 kcal
Atomic # 14 Polarization: 41.12 SS G_CDS: 1.67 Total: 42.79 kcal
Total: -69.16 0.97 -68.19 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001024361966.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.822 kcal
(2) G-P(sol) polarization free energy of solvation -69.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.664 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.193 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds