Wall clock time and date at job start Tue Mar 31 2020 03:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35038 * 124.88267 * 2 1 4 4 C 1.35367 * 107.22836 * 180.02562 * 3 2 1 5 5 C 1.41505 * 105.50047 * 0.02562 * 4 3 2 6 6 C 1.47711 * 126.51145 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00386 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99477 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99890 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.70297 * 299.95616 * 10 9 8 12 12 C 1.52766 * 109.51321 * 179.84572 * 10 9 8 13 13 C 1.53038 * 109.38474 * 185.70780 * 12 10 9 14 14 C 1.53041 * 109.54210 * 61.23555 * 13 12 10 15 15 C 1.53192 * 109.31051 * 298.63585 * 14 13 12 16 16 N 1.46923 * 109.58964 * 60.31482 * 10 9 8 17 17 C 1.36938 * 120.62846 * 353.41785 * 16 10 9 18 18 H 1.08001 * 120.00178 * 30.93545 * 17 16 10 19 19 C 1.38809 * 120.00042 * 210.93609 * 17 16 10 20 20 N 1.31620 * 120.00330 * 13.72972 * 19 17 16 21 21 Si 1.86805 * 119.99961 * 193.73112 * 19 17 16 22 22 H 1.48499 * 109.47203 * 179.97438 * 21 19 17 23 23 H 1.48505 * 109.46958 * 300.00070 * 21 19 17 24 24 H 1.48503 * 109.47130 * 59.99861 * 21 19 17 25 25 N 1.28470 * 124.88675 * 180.34032 * 2 1 3 26 26 H 1.08993 * 109.47073 * 89.99165 * 1 2 3 27 27 H 1.08997 * 109.46427 * 209.99118 * 1 2 3 28 28 H 1.08996 * 109.46926 * 329.98944 * 1 2 3 29 29 H 1.08002 * 126.38732 * 0.06791 * 3 2 1 30 30 H 1.07999 * 127.24813 * 179.97438 * 4 3 2 31 31 H 0.97001 * 120.00331 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47588 * 59.99533 * 9 8 6 33 33 H 1.08997 * 109.46833 * 299.99815 * 9 8 6 34 34 H 1.08994 * 109.56710 * 65.66401 * 12 10 9 35 35 H 1.09000 * 109.35108 * 305.61614 * 12 10 9 36 36 H 1.08998 * 109.45833 * 301.21543 * 13 12 10 37 37 H 1.09002 * 109.44895 * 181.25168 * 13 12 10 38 38 H 1.08997 * 109.49799 * 178.68442 * 14 13 12 39 39 H 1.08995 * 109.49465 * 58.58275 * 14 13 12 40 40 H 1.09001 * 109.58667 * 294.84581 * 15 14 13 41 41 H 1.09006 * 109.70244 * 174.49052 * 15 14 13 42 42 H 0.96999 * 119.99863 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2373 1.1078 0.0000 4 6 3.5273 0.6972 -0.0006 5 6 3.4741 -0.7168 -0.0015 6 6 4.6274 -1.6397 -0.0030 7 8 5.7598 -1.1975 -0.0039 8 7 4.4242 -2.9721 -0.0043 9 6 5.5680 -3.8875 -0.0051 10 6 5.0650 -5.3323 -0.0059 11 1 4.4604 -5.5115 0.8832 12 6 6.2570 -6.2877 -0.0107 13 6 5.7546 -7.7261 -0.1550 14 6 5.0074 -7.8766 -1.4821 15 6 3.7965 -6.9383 -1.4910 16 7 4.2553 -5.5714 -1.2084 17 6 3.9390 -4.5407 -2.0528 18 1 4.6186 -3.7093 -2.1683 19 6 2.7450 -4.5645 -2.7602 20 7 1.8010 -5.4201 -2.4295 21 14 2.4777 -3.3822 -4.1815 22 1 1.1321 -3.6086 -4.7674 23 1 2.5746 -1.9849 -3.6880 24 1 3.5143 -3.6135 -5.2194 25 7 2.1998 -1.0538 -0.0063 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3632 -0.8901 0.5137 28 1 -0.3633 0.8899 0.5140 29 1 1.8905 2.1306 0.0010 30 1 4.4109 1.3182 -0.0011 31 1 3.5207 -3.3250 -0.0039 32 1 6.1728 -3.7142 0.8850 33 1 6.1727 -3.7124 -0.8949 34 1 6.8091 -6.1872 0.9237 35 1 6.9111 -6.0450 -0.8482 36 1 5.0811 -7.9599 0.6694 37 1 6.6029 -8.4104 -0.1362 38 1 4.6702 -8.9069 -1.5950 39 1 5.6733 -7.6189 -2.3057 40 1 3.0864 -7.2510 -0.7254 41 1 3.3160 -6.9676 -2.4690 42 1 0.9668 -5.4370 -2.9241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024799577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:50 Heat of formation + Delta-G solvation = 66.395263 kcal Electronic energy + Delta-G solvation = -24415.024136 eV Core-core repulsion = 21011.614130 eV Total energy + Delta-G solvation = -3403.410006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30974 -38.88732 -37.54152 -34.05240 -33.22394 -32.99104 -30.89599 -30.24667 -29.84106 -27.48675 -25.82895 -24.68300 -22.40649 -22.03003 -21.18421 -20.55985 -19.42105 -18.95953 -17.56949 -16.48559 -16.04627 -15.84371 -15.47221 -15.05809 -14.20091 -13.99453 -13.79690 -13.64551 -13.46296 -13.25114 -12.89167 -12.78572 -12.61379 -12.50249 -12.33489 -11.94508 -11.64736 -11.14481 -10.88502 -10.72594 -10.53715 -10.47167 -10.24091 -10.08844 -9.93891 -9.59004 -9.42155 -9.25251 -8.99357 -8.80303 -8.48743 -8.08117 -6.57682 -5.76800 -3.21833 2.02738 2.42247 2.69375 3.40261 3.42295 3.48358 3.92415 4.09372 4.50958 4.55705 4.92737 5.07180 5.19760 5.30186 5.36671 5.40829 5.57958 5.62289 5.70081 5.75175 5.92245 6.00393 6.03661 6.13449 6.22274 6.37659 6.40959 6.47682 6.65017 6.68771 6.76753 6.78292 6.91094 6.97500 7.05142 7.28307 7.43488 7.70528 7.87306 8.12512 8.47403 8.50268 8.98043 9.24461 9.85694 10.43354 11.30669 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015151 B = 0.006174 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.581931 B = 4534.299653 C = 5581.547369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.290 5.290 3 C -0.030 4.030 4 C -0.184 4.184 5 C -0.009 4.009 6 C 0.595 3.405 7 O -0.560 6.560 8 N -0.679 5.679 9 C 0.133 3.867 10 C 0.160 3.840 11 H 0.031 0.969 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.144 4.144 15 C 0.174 3.826 16 N -0.587 5.587 17 C -0.249 4.249 18 H 0.069 0.931 19 C 0.014 3.986 20 N -0.899 5.899 21 Si 0.892 3.108 22 H -0.292 1.292 23 H -0.283 1.283 24 H -0.285 1.285 25 N -0.245 5.245 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.177 0.823 30 H 0.159 0.841 31 H 0.421 0.579 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.084 0.916 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 6.673 6.240 9.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.078 5.078 3 C -0.172 4.172 4 C -0.212 4.212 5 C -0.169 4.169 6 C 0.378 3.622 7 O -0.439 6.439 8 N -0.329 5.329 9 C 0.009 3.991 10 C 0.053 3.947 11 H 0.049 0.951 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.183 4.183 15 C 0.048 3.952 16 N -0.311 5.311 17 C -0.379 4.379 18 H 0.086 0.914 19 C -0.185 4.185 20 N -0.543 5.543 21 Si 0.722 3.278 22 H -0.218 1.218 23 H -0.209 1.209 24 H -0.211 1.211 25 N -0.080 5.080 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.195 0.805 30 H 0.176 0.824 31 H 0.260 0.740 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.102 0.898 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.769 6.013 6.161 8.789 hybrid contribution -0.299 1.184 -0.968 1.558 sum -2.068 7.197 5.193 9.112 Atomic orbital electron populations 1.22115 0.73607 1.05098 1.04381 1.45433 1.07721 1.03219 1.51467 1.22767 0.91147 0.93569 1.09760 1.21741 0.97049 0.93766 1.08656 1.22099 0.90970 0.94096 1.09783 1.16873 0.86210 0.81983 0.77088 1.90709 1.22593 1.77614 1.52983 1.45904 1.11955 1.04301 1.70734 1.21334 0.88219 0.88687 1.00812 1.20642 0.91906 0.90984 0.91153 0.95111 1.21868 0.98390 0.95898 1.00541 1.21357 0.98795 0.95900 0.98410 1.22195 1.00358 0.99281 0.96502 1.20751 0.90989 0.82121 1.01309 1.44045 1.60458 1.04278 1.22344 1.19121 0.99836 1.00803 1.18100 0.91373 1.24987 0.95109 0.98209 1.00217 1.69997 1.05314 1.38516 1.40470 0.86522 0.76746 0.81385 0.83129 1.21813 1.20910 1.21121 1.73726 1.03114 1.13358 1.17828 0.89925 0.88437 0.88976 0.80533 0.82358 0.73965 0.92505 0.91438 0.92987 0.92071 0.92903 0.93760 0.93601 0.92845 0.96436 0.89763 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 11.31 59.85 0.68 1.52 16 2 N -0.29 -4.27 3.70 -68.13 -0.25 -4.53 16 3 C -0.03 -0.40 11.46 -17.16 -0.20 -0.59 16 4 C -0.18 -2.99 10.81 -39.36 -0.43 -3.41 16 5 C -0.01 -0.17 7.13 -82.77 -0.59 -0.76 16 6 C 0.59 12.90 7.83 -12.39 -0.10 12.80 16 7 O -0.56 -13.03 16.93 5.31 0.09 -12.94 16 8 N -0.68 -14.56 3.84 -61.30 -0.24 -14.79 16 9 C 0.13 2.69 4.42 -4.04 -0.02 2.67 16 10 C 0.16 3.24 2.99 -67.82 -0.20 3.03 16 11 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 12 C -0.13 -2.20 5.35 -26.83 -0.14 -2.35 16 13 C -0.11 -1.80 5.89 -26.69 -0.16 -1.95 16 14 C -0.14 -2.73 6.08 -26.61 -0.16 -2.90 16 15 C 0.17 4.02 5.27 -3.71 -0.02 4.00 16 16 N -0.59 -13.91 2.98 -165.02 -0.49 -14.40 16 17 C -0.25 -6.50 6.98 -15.06 -0.11 -6.60 16 18 H 0.07 1.85 5.85 -52.49 -0.31 1.54 16 19 C 0.01 0.38 4.97 -17.43 -0.09 0.29 16 20 N -0.90 -25.06 11.22 55.49 0.62 -24.44 16 21 Si 0.89 22.18 29.58 -169.99 -5.03 17.15 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 N -0.24 -4.68 11.67 33.42 0.39 -4.29 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 31 H 0.42 9.66 7.13 -40.82 -0.29 9.37 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.46 7.42 -51.93 -0.39 1.08 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 2.19 6.19 -51.93 -0.32 1.87 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -32.21 340.40 -7.66 -39.87 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.36 Total: 7.48 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -1.53 Total: 5.75 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.03 Total: -62.45 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.21 -7.66 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024799577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.267 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds