Wall clock time and date at job start Tue Mar 31 2020 03:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35038 * 124.88267 * 2 1 4 4 C 1.35367 * 107.22836 * 180.02562 * 3 2 1 5 5 C 1.41505 * 105.50047 * 0.02562 * 4 3 2 6 6 C 1.47711 * 126.51145 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00386 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99477 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99890 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.70297 * 299.95616 * 10 9 8 12 12 C 1.52766 * 109.51321 * 179.84572 * 10 9 8 13 13 C 1.53038 * 109.38474 * 185.70780 * 12 10 9 14 14 C 1.53041 * 109.54210 * 61.23555 * 13 12 10 15 15 C 1.53192 * 109.31051 * 298.63585 * 14 13 12 16 16 N 1.46923 * 109.58964 * 60.31482 * 10 9 8 17 17 C 1.36938 * 120.62846 * 353.41785 * 16 10 9 18 18 H 1.08001 * 120.00178 * 30.93545 * 17 16 10 19 19 C 1.38809 * 120.00042 * 210.93609 * 17 16 10 20 20 N 1.31620 * 120.00330 * 13.72972 * 19 17 16 21 21 Si 1.86805 * 119.99961 * 193.73112 * 19 17 16 22 22 H 1.48499 * 109.47203 * 179.97438 * 21 19 17 23 23 H 1.48505 * 109.46958 * 300.00070 * 21 19 17 24 24 H 1.48503 * 109.47130 * 59.99861 * 21 19 17 25 25 N 1.28470 * 124.88675 * 180.34032 * 2 1 3 26 26 H 1.08993 * 109.47073 * 89.99165 * 1 2 3 27 27 H 1.08997 * 109.46427 * 209.99118 * 1 2 3 28 28 H 1.08996 * 109.46926 * 329.98944 * 1 2 3 29 29 H 1.08002 * 126.38732 * 0.06791 * 3 2 1 30 30 H 1.07999 * 127.24813 * 179.97438 * 4 3 2 31 31 H 0.97001 * 120.00331 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47588 * 59.99533 * 9 8 6 33 33 H 1.08997 * 109.46833 * 299.99815 * 9 8 6 34 34 H 1.08994 * 109.56710 * 65.66401 * 12 10 9 35 35 H 1.09000 * 109.35108 * 305.61614 * 12 10 9 36 36 H 1.08998 * 109.45833 * 301.21543 * 13 12 10 37 37 H 1.09002 * 109.44895 * 181.25168 * 13 12 10 38 38 H 1.08997 * 109.49799 * 178.68442 * 14 13 12 39 39 H 1.08995 * 109.49465 * 58.58275 * 14 13 12 40 40 H 1.09001 * 109.58667 * 294.84581 * 15 14 13 41 41 H 1.09006 * 109.70244 * 174.49052 * 15 14 13 42 42 H 0.96999 * 119.99863 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2373 1.1078 0.0000 4 6 3.5273 0.6972 -0.0006 5 6 3.4741 -0.7168 -0.0015 6 6 4.6274 -1.6397 -0.0030 7 8 5.7598 -1.1975 -0.0039 8 7 4.4242 -2.9721 -0.0043 9 6 5.5680 -3.8875 -0.0051 10 6 5.0650 -5.3323 -0.0059 11 1 4.4604 -5.5115 0.8832 12 6 6.2570 -6.2877 -0.0107 13 6 5.7546 -7.7261 -0.1550 14 6 5.0074 -7.8766 -1.4821 15 6 3.7965 -6.9383 -1.4910 16 7 4.2553 -5.5714 -1.2084 17 6 3.9390 -4.5407 -2.0528 18 1 4.6186 -3.7093 -2.1683 19 6 2.7450 -4.5645 -2.7602 20 7 1.8010 -5.4201 -2.4295 21 14 2.4777 -3.3822 -4.1815 22 1 1.1321 -3.6086 -4.7674 23 1 2.5746 -1.9849 -3.6880 24 1 3.5143 -3.6135 -5.2194 25 7 2.1998 -1.0538 -0.0063 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3632 -0.8901 0.5137 28 1 -0.3633 0.8899 0.5140 29 1 1.8905 2.1306 0.0010 30 1 4.4109 1.3182 -0.0011 31 1 3.5207 -3.3250 -0.0039 32 1 6.1728 -3.7142 0.8850 33 1 6.1727 -3.7124 -0.8949 34 1 6.8091 -6.1872 0.9237 35 1 6.9111 -6.0450 -0.8482 36 1 5.0811 -7.9599 0.6694 37 1 6.6029 -8.4104 -0.1362 38 1 4.6702 -8.9069 -1.5950 39 1 5.6733 -7.6189 -2.3057 40 1 3.0864 -7.2510 -0.7254 41 1 3.3160 -6.9676 -2.4690 42 1 0.9668 -5.4370 -2.9241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024799577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:50 Heat of formation + Delta-G solvation = 44.960202 kcal Electronic energy + Delta-G solvation = -24415.953630 eV Core-core repulsion = 21011.614130 eV Total energy + Delta-G solvation = -3404.339500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.52227 -40.56277 -39.22047 -35.70827 -34.89523 -34.34512 -32.43239 -31.72747 -31.51140 -28.69190 -27.49764 -26.37143 -23.96206 -23.62193 -22.35726 -22.18049 -20.98588 -20.55380 -18.96152 -18.15295 -17.44988 -17.29876 -17.08091 -16.66745 -16.08860 -15.71838 -15.29578 -15.05871 -14.81976 -14.67175 -14.54399 -14.09280 -14.01134 -13.66300 -13.59048 -13.36075 -13.33699 -12.86232 -12.83296 -12.58583 -12.33677 -12.06469 -11.82745 -11.78198 -11.51976 -11.29968 -11.09140 -10.93216 -10.51839 -10.25214 -10.04614 -9.75847 -8.54030 -7.83279 -5.28366 0.62977 1.25335 1.37131 1.37403 1.44241 1.68846 2.37137 2.48567 2.53613 3.32752 3.47736 3.59680 3.99211 4.01452 4.09764 4.23454 4.28508 4.37323 4.43245 4.48682 4.56683 4.65417 4.66617 4.72918 4.79815 4.82887 4.87992 5.00972 5.14835 5.23255 5.29627 5.38533 5.39569 5.47490 5.61142 5.63967 5.75542 5.85272 5.97231 6.44841 6.62182 7.00170 7.21231 7.29981 7.89566 8.42130 9.21527 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015151 B = 0.006174 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.581931 B = 4534.299653 C = 5581.547369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.286 5.286 3 C 0.001 3.999 4 C -0.207 4.207 5 C -0.049 4.049 6 C 0.589 3.411 7 O -0.585 6.585 8 N -0.683 5.683 9 C 0.136 3.864 10 C 0.159 3.841 11 H 0.030 0.970 12 C -0.121 4.121 13 C -0.102 4.102 14 C -0.135 4.135 15 C 0.178 3.822 16 N -0.600 5.600 17 C -0.234 4.234 18 H 0.055 0.945 19 C -0.027 4.027 20 N -0.921 5.921 21 Si 0.937 3.063 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.287 1.287 25 N -0.284 5.284 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.141 0.859 29 H 0.235 0.765 30 H 0.167 0.833 31 H 0.413 0.587 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.000 1.000 41 H 0.049 0.951 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 7.597 7.151 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.075 5.075 3 C -0.142 4.142 4 C -0.235 4.235 5 C -0.207 4.207 6 C 0.375 3.625 7 O -0.466 6.466 8 N -0.331 5.331 9 C 0.013 3.987 10 C 0.053 3.947 11 H 0.047 0.953 12 C -0.160 4.160 13 C -0.139 4.139 14 C -0.174 4.174 15 C 0.053 3.947 16 N -0.325 5.325 17 C -0.365 4.365 18 H 0.073 0.927 19 C -0.223 4.223 20 N -0.567 5.567 21 Si 0.768 3.232 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.213 1.213 25 N -0.122 5.122 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.159 0.841 29 H 0.251 0.749 30 H 0.185 0.815 31 H 0.250 0.750 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.068 0.932 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.794 6.915 7.079 10.058 hybrid contribution -0.349 0.968 -1.206 1.585 sum -2.143 7.883 5.873 10.061 Atomic orbital electron populations 1.22585 0.70747 1.07346 1.05538 1.45967 1.09358 1.02807 1.49372 1.23537 0.89612 0.95204 1.05840 1.22031 0.99165 0.92329 1.10018 1.22032 0.90828 0.95336 1.12523 1.17265 0.86795 0.82180 0.76281 1.90664 1.23702 1.77973 1.54274 1.45959 1.11656 1.04694 1.70821 1.21369 0.87936 0.88606 1.00817 1.20812 0.92580 0.91855 0.89443 0.95286 1.21817 0.96884 0.95310 1.02028 1.21343 0.99691 0.96079 0.96833 1.22046 0.98390 0.99042 0.97899 1.20588 0.92482 0.82931 0.98717 1.44227 1.60799 1.04060 1.23389 1.19084 0.98998 1.00625 1.17752 0.92696 1.25396 0.95351 0.99567 1.02030 1.70098 1.05457 1.39852 1.41330 0.85822 0.76503 0.79524 0.81386 1.21550 1.22041 1.21326 1.73642 1.03325 1.15737 1.19466 0.89241 0.88993 0.84069 0.74889 0.81515 0.74977 0.90420 0.93323 0.89759 0.92654 0.92472 0.90511 0.91616 0.93552 0.98206 0.93203 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 11.31 127.77 1.44 2.69 16 2 N -0.29 -7.89 3.70 -369.45 -1.37 -9.25 16 3 C 0.00 0.02 11.46 83.54 0.96 0.98 16 4 C -0.21 -6.54 10.81 22.41 0.24 -6.30 16 5 C -0.05 -1.95 7.13 42.46 0.30 -1.65 16 6 C 0.59 26.41 7.83 86.75 0.68 27.09 16 7 O -0.59 -27.99 16.93 -3.93 -0.07 -28.05 16 8 N -0.68 -30.25 3.84 -466.11 -1.79 -32.04 16 9 C 0.14 5.55 4.42 86.38 0.38 5.93 16 10 C 0.16 6.38 2.99 44.83 0.13 6.51 16 11 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 12 C -0.12 -3.92 5.35 30.53 0.16 -3.76 16 13 C -0.10 -3.13 5.89 30.62 0.18 -2.95 16 14 C -0.13 -4.93 6.08 30.67 0.19 -4.74 16 15 C 0.18 8.36 5.27 86.36 0.46 8.81 16 16 N -0.60 -28.88 2.98 -676.01 -2.01 -30.89 16 17 C -0.23 -12.55 6.98 84.03 0.59 -11.96 16 18 H 0.06 3.09 5.85 -2.91 -0.02 3.07 16 19 C -0.03 -1.49 4.97 84.86 0.42 -1.07 16 20 N -0.92 -52.93 11.22 21.65 0.24 -52.69 16 21 Si 0.94 46.81 29.58 68.60 2.03 48.84 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 24 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 25 N -0.28 -10.94 11.67 -48.18 -0.56 -11.50 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.14 0.92 8.13 -2.39 -0.02 0.90 16 29 H 0.23 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.17 4.76 8.06 -2.91 -0.02 4.74 16 31 H 0.41 19.73 7.13 -92.71 -0.66 19.07 16 32 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.05 2.15 7.42 -2.39 -0.02 2.14 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.05 2.67 6.19 -2.38 -0.01 2.66 16 42 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -73.64 340.40 2.97 -70.67 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.36 Total: 25.32 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 6.14 Total: 19.60 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -5.49 Total: -136.37 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.07 Total: -28.05 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -73.64 2.97 -70.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024799577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.630 kcal (2) G-P(sol) polarization free energy of solvation -73.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds