Wall clock time and date at job start Tue Mar 31 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28446 * 125.19364 * 2 1 4 4 C 1.30864 * 110.92718 * 179.97438 * 3 2 1 5 5 C 1.39674 * 107.86348 * 359.77304 * 4 3 2 6 6 C 1.36601 * 125.18998 * 179.97438 * 2 1 3 7 7 C 1.47163 * 126.88252 * 359.97438 * 6 2 1 8 8 O 1.21628 * 120.00282 * 4.86985 * 7 6 2 9 9 N 1.34783 * 120.00152 * 184.88223 * 7 6 2 10 10 C 1.46497 * 120.00149 * 174.38966 * 9 7 6 11 11 C 1.52996 * 109.47183 * 204.99685 * 10 9 7 12 12 C 1.53004 * 109.47330 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46909 * 59.99876 * 12 11 10 14 14 N 1.46497 * 109.46848 * 180.02562 * 13 12 11 15 15 C 1.36944 * 119.99910 * 275.00085 * 14 13 12 16 16 H 1.07992 * 119.99868 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99834 * 180.02562 * 15 14 13 18 18 N 1.31612 * 119.99938 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00107 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47199 * 90.00062 * 19 17 15 21 21 H 1.48501 * 109.47260 * 210.00221 * 19 17 15 22 22 H 1.48501 * 109.46851 * 329.99923 * 19 17 15 23 23 C 1.52996 * 109.47227 * 300.00187 * 13 12 11 24 24 C 1.53000 * 109.46848 * 84.99688 * 10 9 7 25 25 H 1.08992 * 109.47648 * 264.23843 * 1 2 3 26 26 H 1.09002 * 109.46647 * 24.23798 * 1 2 3 27 27 H 1.09008 * 109.46991 * 144.23314 * 1 2 3 28 28 H 1.08001 * 126.06666 * 180.02562 * 4 3 2 29 29 H 1.07996 * 127.32161 * 180.27461 * 5 4 3 30 30 H 0.96999 * 119.99550 * 354.38658 * 9 7 6 31 31 H 1.09003 * 109.47337 * 324.99632 * 10 9 7 32 32 H 1.09003 * 109.46941 * 300.00190 * 11 10 9 33 33 H 1.09003 * 109.47341 * 60.00000 * 11 10 9 34 34 H 1.09001 * 109.47136 * 179.97438 * 12 11 10 35 35 H 1.09004 * 109.46638 * 300.00102 * 12 11 10 36 36 H 1.09003 * 109.47197 * 60.00076 * 13 12 11 37 37 H 0.96999 * 120.00301 * 95.00004 * 14 13 12 38 38 H 0.96998 * 120.00196 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.46941 * 300.00045 * 23 13 12 40 40 H 1.09003 * 109.47341 * 180.02562 * 23 13 12 41 41 H 1.09001 * 109.47284 * 299.99769 * 24 10 9 42 42 H 1.09004 * 109.47286 * 60.00406 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 0.0005 5 6 3.5611 -0.6668 0.0062 6 6 2.2522 -1.1164 0.0005 7 6 1.7992 -2.5165 0.0017 8 8 0.6134 -2.7722 -0.0872 9 7 2.6983 -3.5157 0.1014 10 6 2.2419 -4.9021 0.2264 11 6 3.3204 -5.7332 0.9241 12 6 2.8440 -7.1813 1.0540 13 6 2.5773 -7.7573 -0.3381 14 7 2.1205 -9.1437 -0.2136 15 6 3.0339 -10.1590 -0.1122 16 1 4.0908 -9.9376 -0.1236 17 6 2.6011 -11.4727 0.0052 18 7 3.4789 -12.4485 0.1032 19 14 0.7728 -11.8556 0.0257 20 1 0.2996 -12.0854 -1.3630 21 1 0.5313 -13.0744 0.8390 22 1 0.0341 -10.7113 0.6174 23 6 1.4987 -6.9262 -1.0358 24 6 1.9747 -5.4784 -1.1655 25 1 -0.3634 -0.1032 1.0224 26 1 -0.3633 0.9371 -0.4219 27 1 -0.3633 -0.8339 -0.6007 28 1 4.3049 1.4166 0.0011 29 1 4.4594 -1.2664 0.0122 30 1 3.6476 -3.3167 0.0903 31 1 1.3242 -4.9310 0.8139 32 1 4.2381 -5.7043 0.3365 33 1 3.5108 -5.3226 1.9157 34 1 3.6126 -7.7735 1.5507 35 1 1.9262 -7.2105 1.6413 36 1 3.4951 -7.7281 -0.9254 37 1 1.1712 -9.3425 -0.2029 38 1 3.1765 -13.3664 0.1856 39 1 0.5809 -6.9555 -0.4485 40 1 1.3083 -7.3368 -2.0274 41 1 1.2063 -4.8864 -1.6626 42 1 2.8924 -5.4497 -1.7530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026462523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:29 Heat of formation + Delta-G solvation = 45.220983 kcal Electronic energy + Delta-G solvation = -23116.636707 eV Core-core repulsion = 19712.308515 eV Total energy + Delta-G solvation = -3404.328191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.81299 -39.95991 -38.04727 -35.17146 -33.72861 -33.09363 -31.52273 -30.63616 -30.52797 -27.81747 -27.33946 -24.10397 -22.92299 -22.44888 -21.87366 -20.76718 -20.42122 -19.64025 -18.25593 -17.50979 -16.59053 -16.43826 -15.99301 -15.22105 -14.88545 -14.75161 -14.31735 -14.09146 -13.90212 -13.77687 -13.40275 -13.12235 -12.95461 -12.74109 -12.63626 -12.35696 -11.97591 -11.86239 -11.15544 -11.00854 -10.96607 -10.86784 -10.74274 -10.41273 -10.30787 -10.09607 -9.78783 -9.57998 -9.55393 -9.37116 -9.12303 -8.90066 -7.26938 -5.77414 -3.12685 0.96346 2.07460 2.29757 2.94940 2.98253 3.38010 3.41397 3.45839 4.21932 4.29413 4.59268 4.76165 4.82847 4.86104 4.93145 4.94355 5.07689 5.20496 5.29829 5.38784 5.43710 5.46045 5.51521 5.57226 5.71110 5.75265 5.90293 6.08118 6.13049 6.15674 6.19517 6.26152 6.37411 6.43679 6.43917 6.57149 6.85144 6.99251 7.21544 7.71381 7.89772 7.99288 8.42056 9.20886 9.93768 10.13738 11.40980 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.040705 B = 0.002841 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.703959 B = 9854.649139 C =10293.036207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.258 5.258 3 N -0.281 5.281 4 C -0.004 4.004 5 C -0.190 4.190 6 C -0.037 4.037 7 C 0.590 3.410 8 O -0.539 6.539 9 N -0.707 5.707 10 C 0.148 3.852 11 C -0.122 4.122 12 C -0.132 4.132 13 C 0.181 3.819 14 N -0.750 5.750 15 C -0.242 4.242 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.125 4.125 24 C -0.121 4.121 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.187 0.813 29 H 0.162 0.838 30 H 0.402 0.598 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.467 26.115 -0.011 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.046 5.046 3 N -0.114 5.114 4 C -0.179 4.179 5 C -0.219 4.219 6 C -0.165 4.165 7 C 0.375 3.625 8 O -0.417 6.417 9 N -0.358 5.358 10 C 0.044 3.956 11 C -0.161 4.161 12 C -0.173 4.173 13 C 0.072 3.928 14 N -0.391 5.391 15 C -0.372 4.372 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.583 5.583 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.164 4.164 24 C -0.161 4.161 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.128 0.872 28 H 0.204 0.796 29 H 0.179 0.821 30 H 0.237 0.763 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.014 26.664 -0.046 26.834 hybrid contribution -0.212 -0.934 0.114 0.964 sum -3.226 25.731 0.068 25.932 Atomic orbital electron populations 1.22350 0.72406 1.05716 1.04998 1.45641 1.07981 1.01730 1.49207 1.73231 1.04466 1.13699 1.19983 1.23586 0.93467 0.95023 1.05864 1.22279 0.95605 0.95666 1.08375 1.21500 0.91532 0.89825 1.13680 1.16918 0.85880 0.83014 0.76716 1.90799 1.16279 1.84484 1.50136 1.45860 1.09591 1.06647 1.73656 1.21196 0.98851 0.78069 0.97439 1.21825 0.97682 0.96642 0.99976 1.22193 1.01577 0.92607 1.00893 1.20220 0.95617 0.84035 0.92933 1.42805 1.05025 1.01765 1.89544 1.19077 0.90322 0.85413 1.42399 0.89212 1.24675 0.96930 0.95575 1.02041 1.69696 1.32251 0.99195 1.57126 0.86556 0.86826 0.77473 0.77717 1.21119 1.21823 1.20278 1.21798 0.99426 0.93687 1.01452 1.21833 1.01638 0.96468 0.96121 0.89691 0.88739 0.87249 0.79598 0.82080 0.76300 0.89344 0.91420 0.91907 0.90939 0.92487 0.92624 0.80669 0.93089 0.92176 0.91438 0.91760 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.71 59.84 0.64 1.34 16 2 N -0.26 -2.75 3.75 -63.88 -0.24 -2.99 16 3 N -0.28 -3.01 11.90 30.59 0.36 -2.65 16 4 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 5 C -0.19 -1.58 10.50 -38.98 -0.41 -1.99 16 6 C -0.04 -0.39 6.96 -82.06 -0.57 -0.96 16 7 C 0.59 6.88 7.75 -12.63 -0.10 6.78 16 8 O -0.54 -7.74 14.45 5.25 0.08 -7.67 16 9 N -0.71 -6.99 5.07 -54.97 -0.28 -7.27 16 10 C 0.15 1.74 2.41 -67.93 -0.16 1.58 16 11 C -0.12 -1.44 5.39 -26.73 -0.14 -1.59 16 12 C -0.13 -2.10 5.50 -26.73 -0.15 -2.25 16 13 C 0.18 3.28 2.77 -67.93 -0.19 3.09 16 14 N -0.75 -17.26 4.92 -53.43 -0.26 -17.52 16 15 C -0.24 -6.68 10.41 -15.05 -0.16 -6.84 16 16 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 17 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 18 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16 19 Si 0.88 22.02 27.74 -169.99 -4.71 17.31 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 23 C -0.12 -1.90 5.39 -26.76 -0.14 -2.04 16 24 C -0.12 -1.55 5.49 -26.75 -0.15 -1.69 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.11 0.97 6.55 -51.92 -0.34 0.63 16 28 H 0.19 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.16 0.83 7.58 -52.49 -0.40 0.44 16 30 H 0.40 2.90 7.63 -40.82 -0.31 2.59 16 31 H 0.09 1.19 7.66 -51.93 -0.40 0.80 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.36 8.26 5.66 -40.82 -0.23 8.03 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -33.84 342.29 -7.29 -41.13 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.34 Total: 7.66 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.83 Total: -4.80 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.36 Total: -58.78 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.08 Total: -7.67 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.84 -7.29 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026462523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.355 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds