Wall clock time and date at job start Tue Mar 31 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28446 * 125.19364 * 2 1 4 4 C 1.30864 * 110.92718 * 179.97438 * 3 2 1 5 5 C 1.39674 * 107.86348 * 359.77304 * 4 3 2 6 6 C 1.36601 * 125.18998 * 179.97438 * 2 1 3 7 7 C 1.47163 * 126.88252 * 359.97438 * 6 2 1 8 8 O 1.21628 * 120.00282 * 4.86985 * 7 6 2 9 9 N 1.34783 * 120.00152 * 184.88223 * 7 6 2 10 10 C 1.46497 * 120.00149 * 174.38966 * 9 7 6 11 11 C 1.52996 * 109.47183 * 204.99685 * 10 9 7 12 12 C 1.53004 * 109.47330 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46909 * 59.99876 * 12 11 10 14 14 N 1.46497 * 109.46848 * 180.02562 * 13 12 11 15 15 C 1.36944 * 119.99910 * 275.00085 * 14 13 12 16 16 H 1.07992 * 119.99868 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99834 * 180.02562 * 15 14 13 18 18 N 1.31612 * 119.99938 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00107 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47199 * 90.00062 * 19 17 15 21 21 H 1.48501 * 109.47260 * 210.00221 * 19 17 15 22 22 H 1.48501 * 109.46851 * 329.99923 * 19 17 15 23 23 C 1.52996 * 109.47227 * 300.00187 * 13 12 11 24 24 C 1.53000 * 109.46848 * 84.99688 * 10 9 7 25 25 H 1.08992 * 109.47648 * 264.23843 * 1 2 3 26 26 H 1.09002 * 109.46647 * 24.23798 * 1 2 3 27 27 H 1.09008 * 109.46991 * 144.23314 * 1 2 3 28 28 H 1.08001 * 126.06666 * 180.02562 * 4 3 2 29 29 H 1.07996 * 127.32161 * 180.27461 * 5 4 3 30 30 H 0.96999 * 119.99550 * 354.38658 * 9 7 6 31 31 H 1.09003 * 109.47337 * 324.99632 * 10 9 7 32 32 H 1.09003 * 109.46941 * 300.00190 * 11 10 9 33 33 H 1.09003 * 109.47341 * 60.00000 * 11 10 9 34 34 H 1.09001 * 109.47136 * 179.97438 * 12 11 10 35 35 H 1.09004 * 109.46638 * 300.00102 * 12 11 10 36 36 H 1.09003 * 109.47197 * 60.00076 * 13 12 11 37 37 H 0.96999 * 120.00301 * 95.00004 * 14 13 12 38 38 H 0.96998 * 120.00196 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.46941 * 300.00045 * 23 13 12 40 40 H 1.09003 * 109.47341 * 180.02562 * 23 13 12 41 41 H 1.09001 * 109.47284 * 299.99769 * 24 10 9 42 42 H 1.09004 * 109.47286 * 60.00406 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 0.0005 5 6 3.5611 -0.6668 0.0062 6 6 2.2522 -1.1164 0.0005 7 6 1.7992 -2.5165 0.0017 8 8 0.6134 -2.7722 -0.0872 9 7 2.6983 -3.5157 0.1014 10 6 2.2419 -4.9021 0.2264 11 6 3.3204 -5.7332 0.9241 12 6 2.8440 -7.1813 1.0540 13 6 2.5773 -7.7573 -0.3381 14 7 2.1205 -9.1437 -0.2136 15 6 3.0339 -10.1590 -0.1122 16 1 4.0908 -9.9376 -0.1236 17 6 2.6011 -11.4727 0.0052 18 7 3.4789 -12.4485 0.1032 19 14 0.7728 -11.8556 0.0257 20 1 0.2996 -12.0854 -1.3630 21 1 0.5313 -13.0744 0.8390 22 1 0.0341 -10.7113 0.6174 23 6 1.4987 -6.9262 -1.0358 24 6 1.9747 -5.4784 -1.1655 25 1 -0.3634 -0.1032 1.0224 26 1 -0.3633 0.9371 -0.4219 27 1 -0.3633 -0.8339 -0.6007 28 1 4.3049 1.4166 0.0011 29 1 4.4594 -1.2664 0.0122 30 1 3.6476 -3.3167 0.0903 31 1 1.3242 -4.9310 0.8139 32 1 4.2381 -5.7043 0.3365 33 1 3.5108 -5.3226 1.9157 34 1 3.6126 -7.7735 1.5507 35 1 1.9262 -7.2105 1.6413 36 1 3.4951 -7.7281 -0.9254 37 1 1.1712 -9.3425 -0.2029 38 1 3.1765 -13.3664 0.1856 39 1 0.5809 -6.9555 -0.4485 40 1 1.3083 -7.3368 -2.0274 41 1 1.2063 -4.8864 -1.6626 42 1 2.8924 -5.4497 -1.7530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026462523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:29 Heat of formation + Delta-G solvation = 21.173274 kcal Electronic energy + Delta-G solvation = -23117.679494 eV Core-core repulsion = 19712.308515 eV Total energy + Delta-G solvation = -3405.370978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.49839 -40.92390 -39.24604 -36.52825 -34.89517 -34.12846 -33.05319 -31.79447 -31.69170 -29.15590 -28.01175 -25.54148 -24.16374 -23.62493 -22.75924 -21.90617 -21.41559 -20.76152 -19.57975 -18.96446 -17.40242 -17.26078 -16.96930 -16.64931 -16.22389 -15.75322 -15.59729 -15.04551 -14.97656 -14.74088 -14.49003 -14.43464 -14.33885 -13.78784 -13.73300 -13.46334 -13.26468 -13.09107 -12.89493 -12.44438 -12.13031 -12.03028 -11.95896 -11.84544 -11.78050 -11.67530 -11.23593 -11.02049 -10.89583 -10.36612 -10.05246 -9.96643 -9.27332 -7.99971 -5.32172 0.21476 1.38864 1.39372 1.41412 1.48752 1.65200 2.14640 2.17712 2.50254 3.31417 3.48766 3.63348 3.64437 3.76775 3.88441 4.15686 4.21751 4.27655 4.33214 4.37460 4.38005 4.51439 4.60180 4.60572 4.64088 4.67990 4.83658 4.88081 4.95317 5.10948 5.14684 5.23778 5.29496 5.41613 5.52365 5.55886 5.63125 5.72037 5.81573 6.25031 6.42333 7.01921 7.10554 7.11257 7.89050 8.06738 9.21639 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.040705 B = 0.002841 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.703959 B = 9854.649139 C =10293.036207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.272 5.272 3 N -0.304 5.304 4 C -0.007 4.007 5 C -0.176 4.176 6 C -0.061 4.061 7 C 0.590 3.410 8 O -0.572 6.572 9 N -0.693 5.693 10 C 0.156 3.844 11 C -0.109 4.109 12 C -0.125 4.125 13 C 0.174 3.826 14 N -0.755 5.755 15 C -0.223 4.223 16 H 0.060 0.940 17 C -0.067 4.067 18 N -0.985 5.985 19 Si 0.952 3.048 20 H -0.280 1.280 21 H -0.299 1.299 22 H -0.254 1.254 23 C -0.116 4.116 24 C -0.113 4.113 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.218 0.782 29 H 0.194 0.806 30 H 0.418 0.582 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.363 0.637 38 H 0.256 0.744 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 28.485 -0.005 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.060 5.060 3 N -0.137 5.137 4 C -0.182 4.182 5 C -0.205 4.205 6 C -0.189 4.189 7 C 0.376 3.624 8 O -0.452 6.452 9 N -0.344 5.344 10 C 0.052 3.948 11 C -0.148 4.148 12 C -0.166 4.166 13 C 0.066 3.934 14 N -0.398 5.398 15 C -0.354 4.354 16 H 0.078 0.922 17 C -0.258 4.258 18 N -0.636 5.636 19 Si 0.779 3.221 20 H -0.207 1.207 21 H -0.226 1.226 22 H -0.178 1.178 23 C -0.155 4.155 24 C -0.152 4.152 25 H 0.107 0.893 26 H 0.129 0.871 27 H 0.117 0.883 28 H 0.234 0.766 29 H 0.211 0.789 30 H 0.256 0.744 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.196 0.804 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.012 29.111 -0.043 29.266 hybrid contribution -0.098 -1.567 0.094 1.573 sum -3.110 27.544 0.051 27.719 Atomic orbital electron populations 1.22409 0.71887 1.06128 1.05226 1.45854 1.08594 1.01780 1.49730 1.73220 1.05594 1.14155 1.20765 1.24217 0.93524 0.95881 1.04606 1.22732 0.95708 0.95872 1.06169 1.21547 0.92627 0.89263 1.15492 1.17095 0.85512 0.83700 0.76056 1.90786 1.17714 1.85002 1.51707 1.45609 1.10308 1.05455 1.73022 1.20939 0.98302 0.79033 0.96510 1.21684 0.98005 0.93580 1.01524 1.21996 1.00789 0.95048 0.98757 1.20488 0.96239 0.82147 0.94477 1.42878 1.04419 1.02919 1.89538 1.19050 0.89868 0.86558 1.39888 0.92176 1.25462 1.01657 0.95551 1.03111 1.69872 1.34578 0.99491 1.59694 0.85455 0.81347 0.77498 0.77752 1.20666 1.22552 1.17819 1.21678 0.98341 0.94767 1.00715 1.21742 1.02025 0.94468 0.96938 0.89251 0.87118 0.88344 0.76584 0.78863 0.74396 0.90831 0.89755 0.89965 0.93279 0.92871 0.93393 0.80426 0.93502 0.92211 0.91839 0.92016 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.71 127.77 1.37 2.68 16 2 N -0.27 -5.44 3.75 -356.03 -1.33 -6.78 16 3 N -0.30 -5.98 11.90 -57.14 -0.68 -6.66 16 4 C -0.01 -0.10 12.03 85.18 1.02 0.92 16 5 C -0.18 -2.34 10.50 22.66 0.24 -2.10 16 6 C -0.06 -1.17 6.96 40.79 0.28 -0.88 16 7 C 0.59 12.70 7.75 86.59 0.67 13.37 16 8 O -0.57 -15.96 14.45 -4.12 -0.06 -16.02 16 9 N -0.69 -11.71 5.07 -446.06 -2.26 -13.97 16 10 C 0.16 3.31 2.41 44.99 0.11 3.41 16 11 C -0.11 -2.28 5.39 30.59 0.16 -2.11 16 12 C -0.13 -3.84 5.50 30.60 0.17 -3.67 16 13 C 0.17 6.12 2.77 44.99 0.12 6.25 16 14 N -0.76 -34.38 4.92 -322.95 -1.59 -35.97 16 15 C -0.22 -12.44 10.41 84.03 0.87 -11.57 16 16 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 17 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 18 N -0.99 -63.03 13.97 21.65 0.30 -62.73 16 19 Si 0.95 45.69 27.74 68.60 1.90 47.59 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 22 H -0.25 -11.04 6.52 99.48 0.65 -10.40 16 23 C -0.12 -3.36 5.39 30.58 0.16 -3.19 16 24 C -0.11 -2.62 5.49 30.58 0.17 -2.45 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.76 6.55 -2.38 -0.02 1.75 16 28 H 0.22 1.45 8.06 -2.91 -0.02 1.42 16 29 H 0.19 1.09 7.58 -2.91 -0.02 1.07 16 30 H 0.42 4.38 7.63 -92.71 -0.71 3.68 16 31 H 0.07 1.85 7.66 -2.39 -0.02 1.83 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 37 H 0.36 16.12 5.66 -92.71 -0.52 15.60 16 38 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.52 8.07 -2.39 -0.02 1.50 16 42 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -74.76 342.29 1.85 -72.91 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.26 Total: 24.39 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 5.83 Total: -2.77 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -5.56 Total: -126.11 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.06 Total: -16.02 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -74.76 1.85 -72.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026462523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.084 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds